mRNA_L-elsbetiae_contig1821.5260.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1821.5260.1
Unique NamemRNA_L-elsbetiae_contig1821.5260.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1821.5260.1 vs. uniprot
Match: D7FK70_ECTSI (tRNA-splicing endonuclease positive effector n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK70_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.320e-23
Identity = 54/72 (75.00%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 SRGDMEVAMQGGSFASAALGMSYCNRRETEAVVFAMELRLGEADVQAEDVTIITPYSAQVRLFQDLVSSSRR 216
            SRG  E A+QGGSFASAALG SYCN RE EAV FA+EL L E DV+AEDV IITPYSAQVRL QD+V +SRR
Sbjct:  602 SRGGTEAAVQGGSFASAALGTSYCNVREAEAVAFALELLLREGDVEAEDVGIITPYSAQVRLLQDVVGTSRR 673
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BLAST of mRNA_L-elsbetiae_contig1821.5260.1 vs. uniprot
Match: A0A6H5L473_9PHAE (AAA_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L473_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.530e-10
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 SRGDMEVAMQGGSFASAALGMSYCNRRETEAVVFAMELRLGEADVQ 138
            SRG  E A+QGGSFASAALG SYCN RE EAV FA+EL L E DV+
Sbjct:  582 SRGGTEAAVQGGSFASAALGTSYCNLREAEAVAFALELLLREGDVE 627
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1821.5260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK70_ECTSI1.320e-2375.00tRNA-splicing endonuclease positive effector n=1 T... [more]
A0A6H5L473_9PHAE4.530e-1071.74AAA_11 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1821contigL-elsbetiae_contig1821:11326..12263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue7e-19
Seed eggNOG ortholog2880.D7FK70
KEGG koko:K14326
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsCOG1112@1,KOG1802@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Exons2
Model size217
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1821.5260.1prot_L-elsbetiae_contig1821.5260.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1821 11326..12251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.6621542-CDS-L-elsbetiae_contig1821:11325..114031622815759.6621542-CDS-L-elsbetiae_contig1821:11325..11403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1821 11326..11403 -
1691683084.408587-CDS-L-elsbetiae_contig1821:11325..114031691683084.408587-CDS-L-elsbetiae_contig1821:11325..11403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1821 11326..11403 -
1622815759.679941-CDS-L-elsbetiae_contig1821:12125..122511622815759.679941-CDS-L-elsbetiae_contig1821:12125..12251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1821 12126..12251 -
1691683084.4201272-CDS-L-elsbetiae_contig1821:12125..122511691683084.4201272-CDS-L-elsbetiae_contig1821:12125..12251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1821 12126..12251 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.6950371-UTR-L-elsbetiae_contig1821:12251..122631622815759.6950371-UTR-L-elsbetiae_contig1821:12251..12263Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1821 12252..12263 -
1691683084.4291239-UTR-L-elsbetiae_contig1821:12251..122631691683084.4291239-UTR-L-elsbetiae_contig1821:12251..12263Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1821 12252..12263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1821.5260.1

>prot_L-elsbetiae_contig1821.5260.1 ID=prot_L-elsbetiae_contig1821.5260.1|Name=mRNA_L-elsbetiae_contig1821.5260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
MEVAMQGGSFASAALGMSYCNRRETEAVVFAMELRLGEADVQAEDVTIIT
PYSAQVRLFQDLVSSSRR
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mRNA from alignment at L-elsbetiae_contig1821:11326..12263-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1821.5260.1 ID=mRNA_L-elsbetiae_contig1821.5260.1|Name=mRNA_L-elsbetiae_contig1821.5260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=938bp|location=Sequence derived from alignment at L-elsbetiae_contig1821:11326..12263- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGGGGTGACATGGAGGTGGCCATGCAAGGCGGGAGTTTTGCCTCCGC
CGCGTTGGGGATGTCGTACTGCAACAGGAGAGAGACGGAGGCGGTGGTGT
TTGCGATGGAGCTTCGTCTTGGGGAGGCCGACGTGCAGGTGCGGGCGGCT
GTAGATGGGAAGACGGACGATAATGAGGTATGTATCCAGATTCTAGTAAT
AATGAGCTGCCTAAAACAACAGTGATGATGCGTGTGATACTGAATTACTG
ATGGTGGCTAAGGCTTGTCTGCCAGCGCCCCCGCTTAACGAGTCGAAATG
AGAAAGACCATGGTCTTTCGATGGTCTTTCGATGCCCTGTTAACCCTTTT
AGAACCCGCCTATAATCTGGCCGCCTGTGATTGGCTAAAGAGCCACGGTC
CCTTCCAGAACCCATCTGCGGGCCCCGCGTTCTTCCCGGGACTGCCGGAC
CCGCCAGCAAAGTGTCTGGGGTGAAACAAGAGGGTGCATCGCTATCCCAC
AGATACAGGAGGAACGTAAACCATGGTTACACAAGGTTCCGCGTACACAA
CAGAGATAAAATCGAAAACTAAAGAAATGGCGACAGTTTGGGTACTCAAG
GCCAAATCAAACTTTTGGCTACACTTTCTATACTGAAAGCCAAGACAAAC
TTTTTTCTAGGCCTTGGCTACACAAAAGTTCTCCCTCTAGGGGGACAAGC
GTTGGTACCAGGCCTGTCGCCAAATCATAGCCATATGACCATCTAGGACT
AAAAGGGTTAAACCCATACTCTGCGTGAAAGCTTCTAGCACGAGCGCCGC
TAAGCCTTGGGAGTATCCCCCTCACCCAGCCCCCTCCCCCGCCGGCCTCG
ACGACACCAGGCGGAAGACGTGACCATCATCACTCCGTACTCGGCACAGG
TCAGGCTATTCCAGGATCTCGTCAGCTCCTCTCGCCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1821:11326..12263-

>mRNA_L-elsbetiae_contig1821.5260.1 ID=mRNA_L-elsbetiae_contig1821.5260.1|Name=mRNA_L-elsbetiae_contig1821.5260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig1821:11326..12263- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGTGGCCATGCAAGGCGGGAGTTTTGCCTCCGCCGCGTTGGGGAT
GTCGTACTGCAACAGGAGAGAGACGGAGGCGGTGGTGTTTGCGATGGAGC
TTCGTCTTGGGGAGGCCGACGTGCAGATGGAGGTGGCCATGCAAGGCGGG
AGTTTTGCCTCCGCCGCGTTGGGGATGTCGTACTGCAACAGGAGAGAGAC
GGAGGCGGTGGTGTTTGCGATGGAGCTTCGTCTTGGGGAGGCCGACGTGC
AGGCGGAAGACGTGACCATCATCACTCCGTACTCGGCACAGGTCAGGCTA
TTCCAGGATCTCGTCAGCTCCTCTCGCCGTGCGGAAGACGTGACCATCAT
CACTCCGTACTCGGCACAGGTCAGGCTATTCCAGGATCTCGTCAGCTCCT
CTCGCCGT
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