mRNA_L-elsbetiae_contig1820.5257.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1820.5257.1
Unique NamemRNA_L-elsbetiae_contig1820.5257.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1820.5257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1820contigL-elsbetiae_contig1820:22307..23136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size830
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1820.5257.1prot_L-elsbetiae_contig1820.5257.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1820 22374..22814 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.2674296-UTR-L-elsbetiae_contig1820:22306..223731622815759.2674296-UTR-L-elsbetiae_contig1820:22306..22373Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1820 22307..22373 +
1691683084.1494908-UTR-L-elsbetiae_contig1820:22306..223731691683084.1494908-UTR-L-elsbetiae_contig1820:22306..22373Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1820 22307..22373 +
1622815759.2907126-UTR-L-elsbetiae_contig1820:22814..231361622815759.2907126-UTR-L-elsbetiae_contig1820:22814..23136Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1820 22815..23136 +
1691683084.171068-UTR-L-elsbetiae_contig1820:22814..231361691683084.171068-UTR-L-elsbetiae_contig1820:22814..23136Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1820 22815..23136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.279744-CDS-L-elsbetiae_contig1820:22373..228141622815759.279744-CDS-L-elsbetiae_contig1820:22373..22814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1820 22374..22814 +
1691683084.159627-CDS-L-elsbetiae_contig1820:22373..228141691683084.159627-CDS-L-elsbetiae_contig1820:22373..22814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1820 22374..22814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1820.5257.1

>prot_L-elsbetiae_contig1820.5257.1 ID=prot_L-elsbetiae_contig1820.5257.1|Name=mRNA_L-elsbetiae_contig1820.5257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
MVRGIVLCKMVMVSRLTVILAVLSARTSAFHVPAASRSVLPSSSNKMMQS
SSCIAPRGHRQRSSSQLEAKKKKKSALKGPASDALAQIELLEALEAEMEG
VMCEAVPHSLPSVAPSPSLPRLRSHTHPHARTVAPLARPLPFVLHN*
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mRNA from alignment at L-elsbetiae_contig1820:22307..23136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1820.5257.1 ID=mRNA_L-elsbetiae_contig1820.5257.1|Name=mRNA_L-elsbetiae_contig1820.5257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=830bp|location=Sequence derived from alignment at L-elsbetiae_contig1820:22307..23136+ (Laminarionema elsbetiae ELsaHSoW15)
ATATTTTGCAAGCTGTGTATTTTATCAGCTTCCCAAGTTCTCTTGTTCGT
CGCTGTCGCGCGCAGCGATGGTGAGGGGCATTGTGTTGTGTAAGATGGTC
ATGGTGTCAAGATTAACCGTCATCTTGGCGGTCTTAAGTGCCAGGACGTC
AGCGTTTCACGTCCCAGCGGCCTCCCGGAGCGTCCTGCCATCATCGTCCA
ACAAGATGATGCAAAGCTCGTCGTGCATCGCACCTCGAGGCCACCGACAG
AGATCAAGCTCGCAGCTCGAGGCGAAGAAGAAGAAGAAGAGCGCTTTGAA
AGGACCAGCATCAGATGCATTGGCGCAGATAGAGCTTCTGGAGGCATTAG
AGGCGGAGATGGAAGGTGTGATGTGTGAGGCCGTGCCCCACTCGCTCCCA
AGCGTTGCCCCGTCTCCGTCTCTCCCTCGCCTCCGCTCCCATACCCACCC
TCACGCCCGGACCGTAGCGCCCCTTGCAAGGCCTCTTCCTTTCGTTTTGC
ATAACTAGTTACTGACAAACAAATGTCGGAGGTAGACGATGTACTTACTA
CATGAACGTGTTGGGACATGTTCAACTACGATGACAACCGATCTTGGGGG
TTGGCTGGGTTTGAAAAAGACCGAACGAGCACCCAACAATTATACAGCAG
ATACACCAGACCAGTAGGGAAGGGTTGGACAAGAAGAGAAGTACTAGTTC
GCCCACCCAGCGGCGAGCGGGGCTGCTGTTTACGTACGTATCGCGTGGTT
TACCACCCCCCACACAGTCTGAAATCCTGATGAATATTACAGCAGTTTAA
AATCAAGTCAAAGGAGCCAAAAGGACGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1820:22307..23136+

>mRNA_L-elsbetiae_contig1820.5257.1 ID=mRNA_L-elsbetiae_contig1820.5257.1|Name=mRNA_L-elsbetiae_contig1820.5257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig1820:22307..23136+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAGGGGCATTGTGTTGTGTAAGATGGTCATGGTGTCAAGATTAAC
CGTCATCTTGGCGGTCTTAAGTGCCAGGACGTCAGCGTTTCACGTCCCAG
CGGCCTCCCGGAGCGTCCTGCCATCATCGTCCAACAAGATGATGCAAAGC
TCGTCGTGCATCGCACCTCGAGGCCACCGACAGAGATCAAGCTCGCAGCT
CGAGGCGAAGAAGAAGAAGAAGAGCGCTTTGAAAGGACCAGCATCAGATG
CATTGGCGCAGATAGAGCTTCTGGAGGCATTAGAGGCGGAGATGGAAGGT
GTGATGTGTGAGGCCGTGCCCCACTCGCTCCCAAGCGTTGCCCCGTCTCC
GTCTCTCCCTCGCCTCCGCTCCCATACCCACCCTCACGCCCGGACCGTAG
CGCCCCTTGCAAGGCCTCTTCCTTTCGTTTTGCATAACTAGATGGTGAGG
GGCATTGTGTTGTGTAAGATGGTCATGGTGTCAAGATTAACCGTCATCTT
GGCGGTCTTAAGTGCCAGGACGTCAGCGTTTCACGTCCCAGCGGCCTCCC
GGAGCGTCCTGCCATCATCGTCCAACAAGATGATGCAAAGCTCGTCGTGC
ATCGCACCTCGAGGCCACCGACAGAGATCAAGCTCGCAGCTCGAGGCGAA
GAAGAAGAAGAAGAGCGCTTTGAAAGGACCAGCATCAGATGCATTGGCGC
AGATAGAGCTTCTGGAGGCATTAGAGGCGGAGATGGAAGGTGTGATGTGT
GAGGCCGTGCCCCACTCGCTCCCAAGCGTTGCCCCGTCTCCGTCTCTCCC
TCGCCTCCGCTCCCATACCCACCCTCACGCCCGGACCGTAGCGCCCCTTG
CAAGGCCTCTTCCTTTCGTTTTGCATAACTAG
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