mRNA_L-elsbetiae_contig1819.5248.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1819.5248.1
Unique NamemRNA_L-elsbetiae_contig1819.5248.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1819.5248.1 vs. uniprot
Match: D8LS33_ECTSI (Conserved Cys-containing small protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS33_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 2.120e-41
Identity = 91/144 (63.19%), Postives = 103/144 (71.53%), Query Frame = 1 
Query:    1 MREKSEEEV-LTAELSSCMLSHYKYCAAGVLLGLPLSIHKKSYWPVALAAVAGTAADFKEGSANCKQQREALMACVARRKAAEAAKTQSAQPLPAGTTAGD---QAQEDWPAGGQQWPEKG-WEQSF-DGSGGQEADSEGKTKW 414
            MRE+S+EE  L AELSSCMLSHYKYCAAGVLLGLPLS+HKKSYWPV LAAVAGTAADFKEG+A+C+ QREALMA +AR+ A +A   Q A    AGTT        QE WP  G+       WEQ+F D  GG+E D EG  KW
Sbjct:    1 MREQSKEEAELAAELSSCMLSHYKYCAAGVLLGLPLSVHKKSYWPVTLAAVAGTAADFKEGTADCRPQREALMAFIARKNAGQAKAQQEAS---AGTTENPGQHSPQEGWPGEGRXXXXXXXWEQTFHDRDGGKEVDREGGDKW 141
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1819.5248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS33_ECTSI2.120e-4163.19Conserved Cys-containing small protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1819contigL-elsbetiae_contig1819:21029..23541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved Cys-containing small protein
Ec32 orthologEc-08_001970.1
Exons3
Model size1014
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1819.5248.1prot_L-elsbetiae_contig1819.5248.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1819 21029..22944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.009267-CDS-L-elsbetiae_contig1819:21028..210971622815758.009267-CDS-L-elsbetiae_contig1819:21028..21097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1819 21029..21097 +
1691683083.3393188-CDS-L-elsbetiae_contig1819:21028..210971691683083.3393188-CDS-L-elsbetiae_contig1819:21028..21097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1819 21029..21097 +
1622815758.0251544-CDS-L-elsbetiae_contig1819:21894..220021622815758.0251544-CDS-L-elsbetiae_contig1819:21894..22002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1819 21895..22002 +
1691683083.3518715-CDS-L-elsbetiae_contig1819:21894..220021691683083.3518715-CDS-L-elsbetiae_contig1819:21894..22002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1819 21895..22002 +
1622815758.0446894-CDS-L-elsbetiae_contig1819:22704..229441622815758.0446894-CDS-L-elsbetiae_contig1819:22704..22944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1819 22705..22944 +
1691683083.366046-CDS-L-elsbetiae_contig1819:22704..229441691683083.366046-CDS-L-elsbetiae_contig1819:22704..22944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1819 22705..22944 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.0638418-UTR-L-elsbetiae_contig1819:22944..235411622815758.0638418-UTR-L-elsbetiae_contig1819:22944..23541Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1819 22945..23541 +
1691683083.38057-UTR-L-elsbetiae_contig1819:22944..235411691683083.38057-UTR-L-elsbetiae_contig1819:22944..23541Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1819 22945..23541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1819.5248.1

>prot_L-elsbetiae_contig1819.5248.1 ID=prot_L-elsbetiae_contig1819.5248.1|Name=mRNA_L-elsbetiae_contig1819.5248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MREKSEEEVLTAELSSCMLSHYKYCAAGVLLGLPLSIHKKSYWPVALAAV
AGTAADFKEGSANCKQQREALMACVARRKAAEAAKTQSAQPLPAGTTAGD
QAQEDWPAGGQQWPEKGWEQSFDGSGGQEADSEGKTKW*
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mRNA from alignment at L-elsbetiae_contig1819:21029..23541+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1819.5248.1 ID=mRNA_L-elsbetiae_contig1819.5248.1|Name=mRNA_L-elsbetiae_contig1819.5248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2513bp|location=Sequence derived from alignment at L-elsbetiae_contig1819:21029..23541+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGGAAAAGTCTGAGGAGGAAGTGCTGACTGCCGAGCTGTCAAGCTG
CATGCTTTCGCACTACAAGGTGAGTCCATCGTGCAAAGCAAATTGCTTGT
TGGCCATGTAAGAGGCATGAGTGTCTCCGTAGCTCGACGTATAGATAGTG
TACCAGTGCTGAAGCGTGAGGTACTAGGCTCTAGCCAGTTTGCGTGCAGG
AGGTATTGTGTCTTTATGTGTTCCCTCTCCTCTGAATTGACATGCCTGTG
AGTGTATCACTGGTGACTGCTGACCCCGGTACCTGTGCCCACGGAGGAAC
CTACATATGAGAAACAGGGTTTTAGACGACATGAAATACCGCACTGCTGT
GTTTACTTTCCAAACGAATCATCTACCGAGCACTGGTAAATGCGGGTGTG
TCCGTAAGAAAAAGAAAAACAAGTCGTTTTTGCGGTGTACTACTGCTAAA
TAACCTAGTCTTTGTACCGTCCGTAATGACACAATATACCACCCCCCCTT
TTGGTTTGAAATAGTTTCATATCTCCCGAGAGGGTAATATTTTGTGTGGT
ATCCGGTAGTTGACTGCGATAAACGTAATTCGGGTAAACCGATATGTAGC
AGCTCCTACGGCCTAGATGTGTAGACTACTTCACCAGTAGTAGTGAAAGG
TACGCTGATACACACAGTGCATGTGTTTATTTGCACAACTGCACCTTTGA
TACCTCTATTGCAGCATGGCGACAACTTAACCCACCCTGTTGGTGGATAT
CTGATACCCACCCGGCTGGCACTCCGTGTGTCGGCAGCAATGTCTTCATC
ACTTTGTGGGCGTAACAGGCTAGTCAACATAGTTGTGTAGTACAATCTTT
TCTTTCCCGCGCCCAGTACTGCGCAGCTGGGGTGTTGCTCGGCCTGCCGC
TGAGCATCCACAAGAAGAGCTATTGGCCAGTGGCGCTGGCGGCGGTGGCG
GGAACGGCGGCGGATTTCAAAGAGGTGAGATACTGCTGCAGGGAAAGCAT
CATGTTTTCTGGTGTCACAAAACTCGCCTGCTACACTCCTTTGGTTGTAA
GGTCTATGTAAGTTGCTGCGTGCTCGTGCACGCCACGATCAACAGTTGGG
TCTGTGCCTCTTCCGGCTGCAAAGCTATCTGCGACGTCGGTTCAGCGCCT
CAGCGACAGCAGTTGGTTAGGTACTTCGTATTAAATGTTGTTCTAGCCAA
ACTCTCCGAGCTGTGTCGGCACCCGAGATCAACACAAGGTTTGCTTTTGA
CAGCCGAACACGAGGGGGCGCGGCTTTCGCGATAATGGGGGTAATTGTTT
TCCTCTGGGTTCCGGTGGGTGGTGTGGCTTACAGAAAATGGCAACACTCG
ACAATTTGCCTAGAGCCACTGCCTTTCCTGAAGAATATGGACACGATCGC
AAGTGCTGTCAAGGCCCGGGCATAACAGCAGTTAGAACATCTTCACTTTG
GGGCTGATCTAGGCACCAAATAGTAGGAGAAACCCTCACAGAATTCGCAA
TAGAGGGCAGGGCGGGTGTCCCTGTTTGCCTGTATCTGCTCCTTCACAAC
ACCGCCAACGTTTCTCCTTTGTAGGGTACGGTATGTATCTACCAATTCAC
GCGTCGTGAGCTGTTCGCGGTGGCACTTTCCCTCCAAAAAAATGGTTGAT
TCTGACCCCATCTTGCAAATGGACAGGGTAGCGCCAACTGCAAGCAACAA
AGAGAGGCTTTGATGGCGTGCGTTGCTCGAAGAAAAGCCGCGGAGGCGGC
AAAGACGCAATCAGCACAACCGCTGCCAGCTGGAACTACCGCAGGAGATC
AGGCGCAGGAGGATTGGCCCGCGGGTGGGCAGCAATGGCCTGAGAAGGGA
TGGGAGCAGAGTTTTGATGGTAGCGGCGGCCAAGAGGCAGACAGTGAGGG
CAAGACGAAGTGGTGACCCCCCCCCCCACACTCTCCTCCCTTTTATCAAC
AATTGCCGCAAATCGTTCAGGAAATTCATGCTTGAAGTTCCCGATCGGTC
GCCTCCATCGCCAAGTTGGTAAAGCAGTACAGTAGTCTCGAAAGCTTCAA
GCAGCAAAGTTGTAAGATTCGAAAAATGTGATTTCGGTCTCTCTTGCCAG
TGGAAAGTTCGCAATTCGGCTGATTCCGGTCTCTCTCGCGAGTGGAAACT
TGGCAATTCGCCTGTGGGAAGCGATTAGCGTAAGCATACACTCCCTCAAG
AGGGGAATGGGCTGTTTGCCCTGCTTATAGTGTCATGTGCTCAACTGCTG
TTTGTCGAACGGTGCTGCCACCTCATCCGCTTAGATAACTTATTCCTTTT
ATGTAGCACTAGAAGCACGTTTGGTGACGATTTGGCAACACCTAACGTTG
GCCTCTGTTTTATTGCTTTGGAGTGCACAGGCGGTCTTAACCCTTTTGTG
ACTAGAGCCCTGTGGAGTGAGGGTAGTAGTGAGGGTCGAGTTGCGAGCCT
TGTCGTGCCAGTTAACGCTGCAAATAAAAGCTCCGCGCGTTCCTGCGGGT
GCTGCGGTGATGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1819:21029..23541+

>mRNA_L-elsbetiae_contig1819.5248.1 ID=mRNA_L-elsbetiae_contig1819.5248.1|Name=mRNA_L-elsbetiae_contig1819.5248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig1819:21029..23541+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGGAAAAGTCTGAGGAGGAAGTGCTGACTGCCGAGCTGTCAAGCTG
CATGCTTTCGCACTACAAGATGAGGGAAAAGTCTGAGGAGGAAGTGCTGA
CTGCCGAGCTGTCAAGCTGCATGCTTTCGCACTACAAGTACTGCGCAGCT
GGGGTGTTGCTCGGCCTGCCGCTGAGCATCCACAAGAAGAGCTATTGGCC
AGTGGCGCTGGCGGCGGTGGCGGGAACGGCGGCGGATTTCAAAGAGTACT
GCGCAGCTGGGGTGTTGCTCGGCCTGCCGCTGAGCATCCACAAGAAGAGC
TATTGGCCAGTGGCGCTGGCGGCGGTGGCGGGAACGGCGGCGGATTTCAA
AGAGGGTAGCGCCAACTGCAAGCAACAAAGAGAGGCTTTGATGGCGTGCG
TTGCTCGAAGAAAAGCCGCGGAGGCGGCAAAGACGCAATCAGCACAACCG
CTGCCAGCTGGAACTACCGCAGGAGATCAGGCGCAGGAGGATTGGCCCGC
GGGTGGGCAGCAATGGCCTGAGAAGGGATGGGAGCAGAGTTTTGATGGTA
GCGGCGGCCAAGAGGCAGACAGTGAGGGCAAGACGAAGTGGTGAGGTAGC
GCCAACTGCAAGCAACAAAGAGAGGCTTTGATGGCGTGCGTTGCTCGAAG
AAAAGCCGCGGAGGCGGCAAAGACGCAATCAGCACAACCGCTGCCAGCTG
GAACTACCGCAGGAGATCAGGCGCAGGAGGATTGGCCCGCGGGTGGGCAG
CAATGGCCTGAGAAGGGATGGGAGCAGAGTTTTGATGGTAGCGGCGGCCA
AGAGGCAGACAGTGAGGGCAAGACGAAGTGGTGA
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