mRNA_L-elsbetiae_contig18175.5240.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18175.5240.1
Unique NamemRNA_L-elsbetiae_contig18175.5240.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18175.5240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18175contigL-elsbetiae_contig18175:1078..1444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size367
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18175.5240.1prot_L-elsbetiae_contig18175.5240.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18175 1099..1401 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.3602152-UTR-L-elsbetiae_contig18175:1077..10981622815757.3602152-UTR-L-elsbetiae_contig18175:1077..1098Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18175 1078..1098 +
1691683082.967614-UTR-L-elsbetiae_contig18175:1077..10981691683082.967614-UTR-L-elsbetiae_contig18175:1077..1098Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18175 1078..1098 +
1622815757.3804154-UTR-L-elsbetiae_contig18175:1401..14441622815757.3804154-UTR-L-elsbetiae_contig18175:1401..1444Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18175 1402..1444 +
1691683082.988163-UTR-L-elsbetiae_contig18175:1401..14441691683082.988163-UTR-L-elsbetiae_contig18175:1401..1444Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18175 1402..1444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.3703637-CDS-L-elsbetiae_contig18175:1098..14011622815757.3703637-CDS-L-elsbetiae_contig18175:1098..1401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18175 1099..1401 +
1691683082.9785125-CDS-L-elsbetiae_contig18175:1098..14011691683082.9785125-CDS-L-elsbetiae_contig18175:1098..1401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18175 1099..1401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18175.5240.1

>prot_L-elsbetiae_contig18175.5240.1 ID=prot_L-elsbetiae_contig18175.5240.1|Name=mRNA_L-elsbetiae_contig18175.5240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MERDEVVDLLRLSGVGSSERGPHQRHDRQGEESRQEADAREAHRPRVQDL
QGPCEGSGADEGAAEVPGGREVRHHLPRRLPGVQGAAKAGTVTVRPFLRS
*
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mRNA from alignment at L-elsbetiae_contig18175:1078..1444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18175.5240.1 ID=mRNA_L-elsbetiae_contig18175.5240.1|Name=mRNA_L-elsbetiae_contig18175.5240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=367bp|location=Sequence derived from alignment at L-elsbetiae_contig18175:1078..1444+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAGAGAAGAGGCTCAAGACATGGAGCGAGACGAGGTGGTGGACCTACT
GCGACTGTCTGGAGTCGGTAGCAGCGAACGCGGGCCCCATCAACGCCATG
ATCGACAAGGCGAAGAGTCTCGACAAGAAGCTGACGCTCGAGAAGCTCAC
CGACCACGAGTTCAAGATCTGCAGGGACCTTGTGAAGGTTCTGGAGCCGA
CGAGGGCGCTGCAGAGGTCCCTGGAGGGCGAGAAGTACGTCACCATCTCC
CACGTCGACTTCCAGGTGTCCAGGGCGCAGCAAAGGCTGGCACTGTCACA
GTCCGACCCTTCCTTCGCTCCTGAGGTGAAGTTGCCCAAGCTTGGGGCAC
AGCAAAAATAGTACTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18175:1078..1444+

>mRNA_L-elsbetiae_contig18175.5240.1 ID=mRNA_L-elsbetiae_contig18175.5240.1|Name=mRNA_L-elsbetiae_contig18175.5240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig18175:1078..1444+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCGAGACGAGGTGGTGGACCTACTGCGACTGTCTGGAGTCGGTAG
CAGCGAACGCGGGCCCCATCAACGCCATGATCGACAAGGCGAAGAGTCTC
GACAAGAAGCTGACGCTCGAGAAGCTCACCGACCACGAGTTCAAGATCTG
CAGGGACCTTGTGAAGGTTCTGGAGCCGACGAGGGCGCTGCAGAGGTCCC
TGGAGGGCGAGAAGTACGTCACCATCTCCCACGTCGACTTCCAGGTGTCC
AGGGCGCAGCAAAGGCTGGCACTGTCACAGTCCGACCCTTCCTTCGCTCC
TGAATGGAGCGAGACGAGGTGGTGGACCTACTGCGACTGTCTGGAGTCGG
TAGCAGCGAACGCGGGCCCCATCAACGCCATGATCGACAAGGCGAAGAGT
CTCGACAAGAAGCTGACGCTCGAGAAGCTCACCGACCACGAGTTCAAGAT
CTGCAGGGACCTTGTGAAGGTTCTGGAGCCGACGAGGGCGCTGCAGAGGT
CCCTGGAGGGCGAGAAGTACGTCACCATCTCCCACGTCGACTTCCAGGTG
TCCAGGGCGCAGCAAAGGCTGGCACTGTCACAGTCCGACCCTTCCTTCGC
TCCTGA
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