mRNA_L-elsbetiae_contig18162.5237.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18162.5237.1
Unique NamemRNA_L-elsbetiae_contig18162.5237.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18162.5237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18162contigL-elsbetiae_contig18162:342..927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size586
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18162.5237.1prot_L-elsbetiae_contig18162.5237.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18162 346..645 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.022414-UTR-L-elsbetiae_contig18162:341..3451622815757.022414-UTR-L-elsbetiae_contig18162:341..345Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18162 342..345 +
1691683082.7585046-UTR-L-elsbetiae_contig18162:341..3451691683082.7585046-UTR-L-elsbetiae_contig18162:341..345Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18162 342..345 +
1622815757.0436018-UTR-L-elsbetiae_contig18162:645..9271622815757.0436018-UTR-L-elsbetiae_contig18162:645..927Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18162 646..927 +
1691683082.7767699-UTR-L-elsbetiae_contig18162:645..9271691683082.7767699-UTR-L-elsbetiae_contig18162:645..927Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18162 646..927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.0335875-CDS-L-elsbetiae_contig18162:345..6451622815757.0335875-CDS-L-elsbetiae_contig18162:345..645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18162 346..645 +
1691683082.7676294-CDS-L-elsbetiae_contig18162:345..6451691683082.7676294-CDS-L-elsbetiae_contig18162:345..645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18162 346..645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18162.5237.1

>prot_L-elsbetiae_contig18162.5237.1 ID=prot_L-elsbetiae_contig18162.5237.1|Name=mRNA_L-elsbetiae_contig18162.5237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MVSTGARVRMLLYCVRSHGSNSRDIIDHHSAEDLKNYMNSSNLTPHILNM
LRYHASDHMQHASSESGVLTGTGRPTHMRYARHLDTMLHGALTCCRARN*
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mRNA from alignment at L-elsbetiae_contig18162:342..927+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18162.5237.1 ID=mRNA_L-elsbetiae_contig18162.5237.1|Name=mRNA_L-elsbetiae_contig18162.5237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=586bp|location=Sequence derived from alignment at L-elsbetiae_contig18162:342..927+ (Laminarionema elsbetiae ELsaHSoW15)
CCTAATGGTATCTACAGGTGCGCGCGTGCGTATGCTGTTATACTGCGTGC
GAAGCCACGGCAGCAACTCGCGTGACATAATTGACCACCATTCTGCCGAA
GATCTAAAAAATTACATGAACAGCAGTAACTTGACACCGCACATATTAAA
TATGCTGCGTTATCATGCGAGCGATCACATGCAACATGCAAGCAGTGAAA
GCGGCGTACTTACGGGAACCGGCAGACCAACACATATGCGGTACGCTCGT
CACCTGGACACAATGCTGCATGGTGCACTTACATGTTGTCGTGCCCGTAA
TTAAAAGTAGCATGCATGCACAGATTTCATACGGTAAGAAAATTGTATCC
ACAGATGATACACACGGTTTGGCGGTAGGCTAGCGCGTCGTCGCTGCTAC
TGCTGCTGTGACCGTTGAAAACGTGCTGCGCGTAGAGCTCAGCACGACTA
GGCAGACGGCAGGATGACAAAATCGTACCTGTGTGTGCGTGCATGACGCT
AATAAAAGAGACAGGCGGCAACGGAAAAACAACCACATACATACGTACCT
GTGCGTGTCGGCAGGCGACACTGGCAGACAATTACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18162:342..927+

>mRNA_L-elsbetiae_contig18162.5237.1 ID=mRNA_L-elsbetiae_contig18162.5237.1|Name=mRNA_L-elsbetiae_contig18162.5237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig18162:342..927+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTATCTACAGGTGCGCGCGTGCGTATGCTGTTATACTGCGTGCGAAG
CCACGGCAGCAACTCGCGTGACATAATTGACCACCATTCTGCCGAAGATC
TAAAAAATTACATGAACAGCAGTAACTTGACACCGCACATATTAAATATG
CTGCGTTATCATGCGAGCGATCACATGCAACATGCAAGCAGTGAAAGCGG
CGTACTTACGGGAACCGGCAGACCAACACATATGCGGTACGCTCGTCACC
TGGACACAATGCTGCATGGTGCACTTACATGTTGTCGTGCCCGTAATTAA
ATGGTATCTACAGGTGCGCGCGTGCGTATGCTGTTATACTGCGTGCGAAG
CCACGGCAGCAACTCGCGTGACATAATTGACCACCATTCTGCCGAAGATC
TAAAAAATTACATGAACAGCAGTAACTTGACACCGCACATATTAAATATG
CTGCGTTATCATGCGAGCGATCACATGCAACATGCAAGCAGTGAAAGCGG
CGTACTTACGGGAACCGGCAGACCAACACATATGCGGTACGCTCGTCACC
TGGACACAATGCTGCATGGTGCACTTACATGTTGTCGTGCCCGTAATTAA
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