mRNA_L-elsbetiae_contig18.5152.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig18.5152.1 vs. uniprot
Match: A0A6H5JP22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP22_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 4.080e-15 Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 3 Query: 699 PVVVTEAQTCSNGLAGYEASSVCCPLSCGQCGGSGCSRLGEG---CCTGGVKASGDLCSVTRAAPCNID 896 P V EAQTCSNGLAGYE S CC + CG CGG GCS+LG+G CCT + A+G+ CS AAPC +D Sbjct: 391 PAPVMEAQTCSNGLAGYEKSGACCSVGCGTCGGEGCSQLGQGAESCCTSNIIAAGEPCSEKGAAPCIMD 459
BLAST of mRNA_L-elsbetiae_contig18.5152.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 1.590e-14 Identity = 45/82 (54.88%), Postives = 51/82 (62.20%), Query Frame = 3 Query: 699 PVVVTEAQTCSNGLAGYEASSVCCPLSCGQCGGSGC-SRLG--EGCCTGGVKASGDLCSVTRAAPCNIDGDIGSTPEPTPAP 935 P + E C G+ G + S VCC LSCG CGG+GC SR G E CC GGV+ASG CSVT APC + G TPEPTP P Sbjct: 200 PCMTNEVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEACCGGGVRASGRDCSVTGEAPCVVTGPA-FTPEPTPTP 280
BLAST of mRNA_L-elsbetiae_contig18.5152.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 2.870e-13 Identity = 43/85 (50.59%), Postives = 50/85 (58.82%), Query Frame = 3 Query: 711 TEAQTCSNGLAGYEASSV-CCPLSCGQCGGSGCSRLG-------EGCCTGGVKASGDLCSVTRAAPCNIDGDIGSTPEPTPAPEE 941 T A TCSNGL G + + V CCPL CGQCGG+GC+ G CC G +KASG C T APC I GS+P P+P P E Sbjct: 265 TSANTCSNGLEGIDGNGVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCII----GSSPAPSPTPSE 345
BLAST of mRNA_L-elsbetiae_contig18.5152.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 3.010e-13 Identity = 41/71 (57.75%), Postives = 47/71 (66.20%), Query Frame = 3 Query: 699 PVVVTEAQTCSNGLAGYEASSVCCPLSCGQCGGSGCSRLGEG---CCTGGVKASGDLCSVTRAAPCNIDGD 902 P T AQTCSNGLAGYE S CC + CG CGG GCS+LGEG CCT + A+ + CS AAPC +D D Sbjct: 372 PEGYTCAQTCSNGLAGYENSGACCSVGCGTCGGEGCSQLGEGAESCCTSNIIAAREPCSEKGAAPCIMDTD 442
BLAST of mRNA_L-elsbetiae_contig18.5152.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 2.370e-12 Identity = 43/79 (54.43%), Postives = 49/79 (62.03%), Query Frame = 3 Query: 699 PVVVTEAQTCSNGLAGYEASSVCCPLSCGQCGGSGC-SRLG--EGCCTGGVKASGDLCSVTRAAPCNIDGDIGSTPEPT 926 P + E C G+ G + S VCC LSCG CGG+GC SR G E CC GGV+ASG CSVT APC + G TPEPT Sbjct: 161 PCMTNEVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEACCGGGVRASGRDCSVTGEAPCVVTGPA-FTPEPT 238
BLAST of mRNA_L-elsbetiae_contig18.5152.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 1.160e-11 Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 3 Query: 717 AQTCSNGLAGYEASSVCCPLSCGQCGGSGCSRLGEG-----CCTGGVKASGDLCSVTRAAPCNIDGDIGSTPEPTP 929 A TCSNG+ G ++ + CC CG CGGSGC++LG G CC ++ G+LCSVT AAPC +D GS P P+P Sbjct: 2225 ADTCSNGIPGIQSGNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVTMAAPCVVD---GSAPAPSP 2297
BLAST of mRNA_L-elsbetiae_contig18.5152.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 5.790e-11 Identity = 40/74 (54.05%), Postives = 47/74 (63.51%), Query Frame = 3 Query: 714 EAQTCSNGLAGYEASSVCCPLSCGQCGGSGCSRLGEG---CCTGGVKASGDLCSVTRAAPCNIDGDIGSTPEPT 926 E TC G+ G ++S VCC LSCG CGG+GC+ G CC GGV++SG CSVT APC I G TPEPT Sbjct: 49 EVPTCDGGIVGIQSSDVCCSLSCGSCGGTGCTGRDGGADACCGGGVRSSGRFCSVTGEAPC-ITGPA-PTPEPT 120
BLAST of mRNA_L-elsbetiae_contig18.5152.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 1.050e-10 Identity = 36/63 (57.14%), Postives = 40/63 (63.49%), Query Frame = 3 Query: 714 EAQTCSNGLAGYEASSVCCPLSCGQCGGSGCSRLGEG---CCTGGVKASGDLCSVTRAAPCNI 893 E C G+ G +AS VCC LSCG CGGSGCS G CC GGV+ASG CSVT APC + Sbjct: 474 EVPECDGGIVGIQASDVCCSLSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCLV 536
BLAST of mRNA_L-elsbetiae_contig18.5152.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.060e-10 Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 3 Query: 726 CSNGLAGYEASSVCCPLSCGQCGGSGCSRLGEG---CCTGGVKASGDLCSVTRAAPCNIDGDIGSTPEPTP 929 C G+AG +AS VCC +SCG CGGSGCS G CC GGV+ASG CS+T APC P PTP Sbjct: 180 CEGGIAGIQASDVCCSVSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSITEEAPCMTG------PAPTP 244
BLAST of mRNA_L-elsbetiae_contig18.5152.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 5.230e-10 Identity = 37/63 (58.73%), Postives = 42/63 (66.67%), Query Frame = 3 Query: 714 EAQTCSNGLAGYEASSVCCPLSCGQCGGSGCS-RLG--EGCCTGGVKASGDLCSVTRAAPCNI 893 E C G+ G +AS VCC LSCG CGGSGC+ R G E CC GGV+ASG CSVT APC + Sbjct: 303 EVPKCDGGIVGIQASDVCCSLSCGSCGGSGCTGRDGGSESCCGGGVRASGRDCSVTGEAPCVV 365 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18.5152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig18.5152.1 >prot_L-elsbetiae_contig18.5152.1 ID=prot_L-elsbetiae_contig18.5152.1|Name=mRNA_L-elsbetiae_contig18.5152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp MKLAWHSALLLPLALLPVVVTEAQTCSNGLAGYEASSVCCPLSCGQCGGSback to top mRNA from alignment at L-elsbetiae_contig18:18809..22618- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig18.5152.1 ID=mRNA_L-elsbetiae_contig18.5152.1|Name=mRNA_L-elsbetiae_contig18.5152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3810bp|location=Sequence derived from alignment at L-elsbetiae_contig18:18809..22618- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig18:18809..22618- >mRNA_L-elsbetiae_contig18.5152.1 ID=mRNA_L-elsbetiae_contig18.5152.1|Name=mRNA_L-elsbetiae_contig18.5152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig18:18809..22618- (Laminarionema elsbetiae ELsaHSoW15)back to top |