prot_L-elsbetiae_contig1793.5130.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1793.5130.1
Unique Nameprot_L-elsbetiae_contig1793.5130.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length256
Homology
BLAST of mRNA_L-elsbetiae_contig1793.5130.1 vs. uniprot
Match: D7FL61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL61_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 5.410e-73
Identity = 162/218 (74.31%), Postives = 174/218 (79.82%), Query Frame = 0
Query:    1 QAAIWQRLLTCPLFPLRRCLDTVRREFARLCCGLMEDYLEPDLVEHLAGISEERPQVSQTITVGSSFSCSTPRSASSVSMSGSSMWTPSRVTKAGGLGRGSNPLDSFFPFDPYLLRRSHTYVAGMYNSWKAQDDGASRXXXXXXXXXXGVRTPASGRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGFSDAMDASSLSFRDGASG 218
            QA IWQRLLTCPL+PLRRCLDTVRREFARLCCGLM+ YL+ DL+EHLAGISEER QVSQTITVGSSFSCSTPRS+SS+SMS ++MWTPSRVTKAGGLGRGSNPLDSFFPFDPYLLRRSH Y+  MYN+WKAQDD + R          G RTPA    XXXXXXXXXXXXXXXXXXXXXXXXXXX                   MDASS+SFRDGASG
Sbjct:  534 QAVIWQRLLTCPLYPLRRCLDTVRREFARLCCGLMDAYLDRDLLEHLAGISEERSQVSQTITVGSSFSCSTPRSSSSMSMSSNAMWTPSRVTKAGGLGRGSNPLDSFFPFDPYLLRRSHVYIDQMYNTWKAQDDSSRRSTKSS-----GARTPAGAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXD------------------MDASSMSFRDGASG 728          
BLAST of mRNA_L-elsbetiae_contig1793.5130.1 vs. uniprot
Match: A0A7S1CWQ3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CWQ3_CYCTE)

HSP 1 Score: 92.4 bits (228), Expect = 8.230e-19
Identity = 57/136 (41.91%), Postives = 74/136 (54.41%), Query Frame = 0
Query:    5 WQRLLTCPLFPLRRCLDTVRREFARLCCGLMEDYLEPDLVEHLAGISEERPQVSQTITVGSSFSCSTPRSASSVSMSGSSMWTPSRVTK------AGGLGRGSNPLDSFFPFDPYLLRRSHTYVAGMYNSWKAQDD 134
            W+RL    L PLR CL++VR EF  L    M   L P L E L   +      +Q+ T  +    +  R        GS + TP+ + K       GG+G+GSNPLDSFFPFDPYLLRRSH Y+ GMY +W++  D
Sbjct:   51 WERLCKHQLQPLRFCLESVREEF--LSVASMNSLLNPALHEKLVSAAN-----AQSSTFATPIKANRSR--------GSIISTPATLEKRRINGGVGGMGQGSNPLDSFFPFDPYLLRRSHRYIDGMYRNWESVGD 171          
BLAST of mRNA_L-elsbetiae_contig1793.5130.1 vs. uniprot
Match: A0A7S1ZLF3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZLF3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.410e-14
Identity = 54/136 (39.71%), Postives = 72/136 (52.94%), Query Frame = 0
Query:    5 WQRLLTCPLFPLRRCLDTVRREFARLCC--GLMEDYLEPDLV----EHLAGISEERPQVSQTITVGSSFSCSTPRSASSVSMSGSSMWTPSRVTKAGGLGRGSNPLDSFFPFDPYLLRRSHTYVAGMYNSWKAQDD 134
            W ++    L PL+ CL++VR EF  L    GL+++ L   LV    +  +G+S+ R + ++ I        STP +     M G            GGLGRGSNPLDSFFPFDPYLLRRSH +V   Y  W+   D
Sbjct:  689 WMKVCGHHLQPLKYCLESVRHEFLHLASVFGLLDENLLQHLVLEDQKMASGLSKMRQRKARLI--------STPATLEKERMKGG----------VGGLGRGSNPLDSFFPFDPYLLRRSHPFVEPFYKHWEGSAD 806          
BLAST of mRNA_L-elsbetiae_contig1793.5130.1 vs. uniprot
Match: A0A835YJJ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.280e-13
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0
Query:   91 VTKAGGLGRGSNPLDSFFPFDPYLLRRSHTYVAGMYNSW 129
            VT+AGGLG G NPLD++FPFDPYLLRRSH YVAGMYN W
Sbjct:   51 VTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYW 89          
BLAST of mRNA_L-elsbetiae_contig1793.5130.1 vs. uniprot
Match: A0A7S2R3F1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3F1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.730e-13
Identity = 54/135 (40.00%), Postives = 70/135 (51.85%), Query Frame = 0
Query:    5 WQRLLTCPLFPLRRCLDTVRREFARLCCG---LMEDYLEPDLVEHLAGISEERPQVSQTITVGSSFSCSTPRSASSVSMSGSSMWTPSRVTKA------GGLGRGSNPLDSFFPFDPYLLRRSHTYVAGMYNSWK 130
            W +L +  L PL  CL++VR EF  L      L +D LE  +VE+            Q +  G S S    R ASS+        T + + KA      GGLG+GSNPLDSFFPFDPYLLR S+ +V   Y +W+
Sbjct:   19 WNKLCSYHLQPLNYCLESVRGEFLLLAHTFHILDDDLLEKMIVEN------------QRLASGISISKQKKRKASSIR-------TAATLAKARMKGGVGGLGQGSNPLDSFFPFDPYLLRLSYMFVEPHYKNWE 134          
BLAST of mRNA_L-elsbetiae_contig1793.5130.1 vs. uniprot
Match: B7GDC9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDC9_PHATC)

HSP 1 Score: 77.8 bits (190), Expect = 1.220e-12
Identity = 48/127 (37.80%), Postives = 63/127 (49.61%), Query Frame = 0
Query:    5 WQRLLTCPLFPLRRCLDTVRREFARLC--CGLMEDYLEPDLVEHLAGISEERPQVSQTITVGSSFSCSTPRSASSVSMSGSSMWTPSRVTKAGGLGRGSNPLDSFFPFDPYLLRRSHTYVAGMYNSW 129
            W  L + PL PLR CL++VR EF  L   C L+   +   L +    + +   +    I         TP +     +SG            GGLG+G+NPLDSFFPFDPYLLR+SH +V   YN W
Sbjct:  527 WTSLCSHPLQPLRYCLESVRNEFLELSKFCHLINAIVYCQLAQDENNVVKRNKRQVTPIA--------TPATLEKERLSGG----------VGGLGKGTNPLDSFFPFDPYLLRKSHVFVDPFYNHW 635          
BLAST of mRNA_L-elsbetiae_contig1793.5130.1 vs. uniprot
Match: A0A7S3QGM3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QGM3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.040e-11
Identity = 48/134 (35.82%), Postives = 69/134 (51.49%), Query Frame = 0
Query:    5 WQRLLTCPLFPLRRCLDTVRREFARLCCGLMEDYLEPDLVEHL--------AGISEERPQVSQTITVGSSFSCSTPRSASSVSMSGSSMWTPSRVTKAGGLGRGSNPLDSFFPFDPYLLRRSHTYVAGMYNSWK 130
            W  L +  L PL+ CL++VR EF  L      D +E  L+  L        +G+S  + ++ +  ++ ++ +    R +  V                GGLGRGSNPLDSFFPFDPYLLRRS+T+V   Y  W+
Sbjct:  355 WTTLCSHHLTPLKFCLESVRGEFLLLSDRF--DLIESTLLGRLIIQDRKMASGLSTGKKKIKRASSIRTAATLERRRISGGV----------------GGLGRGSNPLDSFFPFDPYLLRRSYTFVDPYYRHWE 470          
BLAST of mRNA_L-elsbetiae_contig1793.5130.1 vs. uniprot
Match: A0A1E7F5A3_9STRA (RNA polymerase I-specific transcription initiation factor RRN3 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5A3_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.490e-10
Identity = 45/128 (35.16%), Postives = 63/128 (49.22%), Query Frame = 0
Query:    5 WQRLLTCPLFPLRRCLDTVRREFARLC--CGLMEDYLEPDLVEHLAGISEERPQVSQTITVGSSFSCSTPRSASSVSMSGSSMWTPSRVTKAGGLGRGSNPLDSFFPFDPYLLRRSHTYVAGMYNSWK 130
            W  L   PL PLR CL++VR EF  +    GL+++ +   LV     +S  R       ++ ++ +    R    V                GGLGRGSNPL SFFPFDP LLR+SH ++  +Y  W+
Sbjct:  607 WTFLCGHPLQPLRFCLESVRSEFLHVAHFYGLIDEDILNKLVADAKRLSTGRVNKKAASSISTAATLERRRQTGGV----------------GGLGRGSNPLKSFFPFDPLLLRQSHEFIEPLYKYWQ 718          
BLAST of mRNA_L-elsbetiae_contig1793.5130.1 vs. uniprot
Match: A0A6U5M950_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5M950_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.250e-10
Identity = 56/155 (36.13%), Postives = 80/155 (51.61%), Query Frame = 0
Query:    5 WQRLLTCP-LFPLRRCLDTVRREFARLC--CGLMEDYLEPDLVEHLAGISEERPQVSQTITVGSSFSCSTP-------RSASSVSM-SGSSMWTPSRVTKA-------------GGLGRG-SNPLDSFFPFDPYLLRRSHTYVAGMYNSWKAQDD 134
            W  L++ P L PLR CL +VR EF  +    GL++D L    +++L   + E P  S + T     + + P       R AS+V++ S   + T  + +KA             GGLG+  SNPLDSFFPFDPYLLR+S+ +V   Y  W+   D
Sbjct:   82 WTALVSDPTLTPLRFCLSSVREEFLHVARVFGLVDDAL----IDNLLADTMESPSSSSSATPSRGNATTKPIRRRVKRRVASTVAVPSVVGIQTAGKASKAANKKKRRDSAGGIGGLGKNASNPLDSFFPFDPYLLRKSYPHVERYYRHWEGSID 232          
BLAST of mRNA_L-elsbetiae_contig1793.5130.1 vs. uniprot
Match: A0A7S2YI08_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YI08_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.330e-10
Identity = 43/129 (33.33%), Postives = 64/129 (49.61%), Query Frame = 0
Query:    5 WQRLLTCPLFPLRRCLDTVRREFARLCCGLMEDYLEPDLVEHLAGISEE--RPQV-SQTITVGSSFSCSTPRSASSVSMSGSSMWTPSRVTKAGGLGRGSNPLDSFFPFDPYLLRRSHTYVAGMYNSWK 130
            W+R+    L PL  CL +V+ EF      L    L+   +E LA  +++  RP+  ++ I++ +  +    R    V                GGLG+G NPL +FFPFDPYLLR S+ ++   YN WK
Sbjct:    2 WRRICFYRLSPLDHCLASVKEEFLEAATVL--GVLDAQTIEQLAHANKQQKRPRKRAKAISIPTMMTLQKERKTGGV----------------GGLGKGDNPLGTFFPFDPYLLRHSYAFIEPFYNHWK 112          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1793.5130.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL61_ECTSI5.410e-7374.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1CWQ3_CYCTE8.230e-1941.91Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1ZLF3_9STRA1.410e-1439.71Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A835YJJ1_9STRA1.280e-1382.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2R3F1_9STRA6.730e-1340.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
B7GDC9_PHATC1.220e-1237.80Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S3QGM3_9STRA3.040e-1135.82Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1E7F5A3_9STRA1.490e-1035.16RNA polymerase I-specific transcription initiation... [more]
A0A6U5M950_9STRA5.250e-1036.13Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2YI08_9STRA5.330e-1033.33Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 220..240
IPR007991RNA polymerase I specific transcription initiation factor RRN3PFAMPF05327RRN3coord: 6..131
e-value: 4.4E-13
score: 48.6
IPR007991RNA polymerase I specific transcription initiation factor RRN3PANTHERPTHR12790TRANSCRIPTION INITIATION FACTOR IA RRN3coord: 5..217

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1793contigL-elsbetiae_contig1793:20916..23332 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1793.5130.1mRNA_L-elsbetiae_contig1793.5130.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1793 20916..23332 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1793.5130.1 ID=prot_L-elsbetiae_contig1793.5130.1|Name=mRNA_L-elsbetiae_contig1793.5130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=256bp
QAAIWQRLLTCPLFPLRRCLDTVRREFARLCCGLMEDYLEPDLVEHLAGI
SEERPQVSQTITVGSSFSCSTPRSASSVSMSGSSMWTPSRVTKAGGLGRG
SNPLDSFFPFDPYLLRRSHTYVAGMYNSWKAQDDGASRRHRRRKKKKSGV
RTPASGRHRRGNGASADAEDSSEEDEDAGSSSPSGSSSSSSSSSEDDEDG
FSDAMDASSLSFRDGASGGMLMARSRRRRAEEKAEKKKRKEAQRRLAKRG
GGGGSR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007991RNA_pol_I_trans_ini_fac_RRN3