Homology
BLAST of mRNA_L-elsbetiae_contig17795.5062.1 vs. uniprot
Match:
D7G1Z5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Z5_ECTSI)
HSP 1 Score: 65.1 bits (157), Expect = 3.010e-8
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 2
Query: 497 LRSPLARYLLLSAILVSLGLSLRYLWRQLAGLVGAALILSTARLW 631
LR+PL RYLLLS +LV+ GL +R+LWRQLAGLVGAALILS AR W
Sbjct: 106 LRTPLERYLLLSVMLVAAGLGVRFLWRQLAGLVGAALILSAARRW 150
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17795.5062.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 3.01e-8 / Id = 75.56 Sequence D7G1Z5_ECTSI
Match Name E-value Identity Description
D7G1Z5_ECTSI 3.010e-8 75.56 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 65.5
Seed ortholog evalue 3e-08
Seed eggNOG ortholog 2880.D7G1Z5
Hectar predicted targeting category other localisation
EggNOG free text desc. Protein of unknown function (DUF1336)
EggNOG OGs 28KK0@1,2QT1F@2759
COG Functional cat. S
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
Exons 1
Model size 823
Cds size 549
Stop 0
Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815741.3351152-UTR-L-elsbetiae_contig17795:1285..1559 1622815741.3351152-UTR-L-elsbetiae_contig17795:1285..1559 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig17795 1286..1559 +
1691683072.5362458-UTR-L-elsbetiae_contig17795:1285..1559 1691683072.5362458-UTR-L-elsbetiae_contig17795:1285..1559 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig17795 1286..1559 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815741.3473635-CDS-L-elsbetiae_contig17795:1559..2108 1622815741.3473635-CDS-L-elsbetiae_contig17795:1559..2108 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17795 1560..2108 +
1691683072.5479994-CDS-L-elsbetiae_contig17795:1559..2108 1691683072.5479994-CDS-L-elsbetiae_contig17795:1559..2108 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17795 1560..2108 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig17795.5062.1
>prot_L-elsbetiae_contig17795.5062.1 ID=prot_L-elsbetiae_contig17795.5062.1|Name=mRNA_L-elsbetiae_contig17795.5062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp
MVVVEPSSAPRPFVASTAPLSRSHVGRTRKGTGTRGQSRVPESSVEPPPA RAIGAEEATTLQPPRARPDPSSSGLRSPLARYLLLSAILVSLGLSLRYLW RQLAGLVGAALILSTARLWQSSAGGAATARGKSSGAATAAPSGSGRGAPR KDASCGADGSEPAAEATGPRDGLGGSSSRREGG back to top mRNA from alignment at L-elsbetiae_contig17795:1286..2108+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17795.5062.1 ID=mRNA_L-elsbetiae_contig17795.5062.1|Name=mRNA_L-elsbetiae_contig17795.5062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=823bp|location=Sequence derived from alignment at L-elsbetiae_contig17795:1286..2108+ (Laminarionema elsbetiae ELsaHSoW15)GTCATAGTCATTGCACAGCACAGGCTTGTGTGTAAGGGCGGCACTTGCTT
GGCGGGACGCGACGAAGACACGAAAGGAGGATAATAGACACCGATCACGG
AGGAGTGGGGAAACGTAAGACACAAGCGACGCTCCTCGGAAGGCTGCAGA
GAAGTGGGACCAACCTTACAGGGCACATCAACTCGATCGCGCCTCTTGCG
TAGGAACACAGAACACGTGTGCTGGCATCAACTGGTAGCAGGTAGACGCG
TTCGTGGCCAACGCCACCGCACGG ATGGTGGTGGTAGAGCCGTCCTCGGC
GCCCCGGCCCTTCGTCGCCAGCACGGCGCCGTTGTCGCGCTCGCATGTTG
GTCGTACACGTAAAGGAACCGGCACCAGAGGGCAGAGCAGGGTACCGGAG
TCCAGCGTAGAGCCGCCTCCAGCACGGGCGATCGGCGCGGAGGAGGCTAC
CACGCTACAGCCGCCGCGTGCGCGCCCCGACCCAAGCAGTAGCGGGCTGC
GGAGCCCGCTGGCGCGCTACTTGCTGCTCTCGGCTATCCTGGTGTCCCTG
GGCCTGTCCTTGAGATACCTGTGGAGACAGCTCGCCGGCCTCGTCGGGGC
GGCGCTGATCCTGTCTACTGCCCGGCTTTGGCAGTCGTCTGCTGGGGGAG
CTGCTACTGCGAGGGGGAAATCCTCCGGCGCTGCTACAGCGGCGCCCTCC
GGCAGTGGCAGGGGTGCCCCACGAAAGGACGCTTCGTGCGGAGCCGACGG
CAGCGAACCTGCGGCGGAGGCAACGGGACCGCGGGACGGCCTCGGGGGTA
GCAGCAGTCGGCGGGAAGGGGGC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig17795:1286..2108+
>mRNA_L-elsbetiae_contig17795.5062.1 ID=mRNA_L-elsbetiae_contig17795.5062.1|Name=mRNA_L-elsbetiae_contig17795.5062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig17795:1286..2108+ (Laminarionema elsbetiae ELsaHSoW15) ATGGTGGTGGTAGAGCCGTCCTCGGCGCCCCGGCCCTTCGTCGCCAGCAC GGCGCCGTTGTCGCGCTCGCATGTTGGTCGTACACGTAAAGGAACCGGCA CCAGAGGGCAGAGCAGGGTACCGGAGTCCAGCGTAGAGCCGCCTCCAGCA CGGGCGATCGGCGCGGAGGAGGCTACCACGCTACAGCCGCCGCGTGCGCG CCCCGACCCAAGCAGTAGCGGGCTGCGGAGCCCGCTGGCGCGCTACTTGC TGCTCTCGGCTATCCTGGTGTCCCTGGGCCTGTCCTTGAGATACCTGTGG AGACAGCTCGCCGGCCTCGTCGGGGCGGCGCTGATCCTGTCTACTGCCCG GCTTTGGCAGTCGTCTGCTGGGGGAGCTGCTACTGCGAGGGGGAAATCCT CCGGCGCTGCTACAGCGGCGCCCTCCGGCAGTGGCAGGGGTGCCCCACGA AAGGACGCTTCGTGCGGAGCCGACGGCAGCGAACCTGCGGCGGAGGCAAC GGGACCGCGGGACGGCCTCGGGGGTAGCAGCAGTCGGCGGGAAGGGGGCA TGGTGGTGGTAGAGCCGTCCTCGGCGCCCCGGCCCTTCGTCGCCAGCACG GCGCCGTTGTCGCGCTCGCATGTTGGTCGTACACGTAAAGGAACCGGCAC CAGAGGGCAGAGCAGGGTACCGGAGTCCAGCGTAGAGCCGCCTCCAGCAC GGGCGATCGGCGCGGAGGAGGCTACCACGCTACAGCCGCCGCGTGCGCGC CCCGACCCAAGCAGTAGCGGGCTGCGGAGCCCGCTGGCGCGCTACTTGCT GCTCTCGGCTATCCTGGTGTCCCTGGGCCTGTCCTTGAGATACCTGTGGA GACAGCTCGCCGGCCTCGTCGGGGCGGCGCTGATCCTGTCTACTGCCCGG CTTTGGCAGTCGTCTGCTGGGGGAGCTGCTACTGCGAGGGGGAAATCCTC CGGCGCTGCTACAGCGGCGCCCTCCGGCAGTGGCAGGGGTGCCCCACGAA AGGACGCTTCGTGCGGAGCCGACGGCAGCGAACCTGCGGCGGAGGCAACG GGACCGCGGGACGGCCTCGGGGGTAGCAGCAGTCGGCGGGAAGGGGGC back to top