prot_L-elsbetiae_contig9826.18775.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9826.18775.1
Unique Nameprot_L-elsbetiae_contig9826.18775.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length314
Homology
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BLAST of mRNA_L-elsbetiae_contig9826.18775.1 vs. uniprot
Match: A0A6H5K4D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D7_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 2.840e-85
Identity = 179/302 (59.27%), Postives = 209/302 (69.21%), Query Frame = 0 
Query:   16 KRGGVRLVIAALETSPCLRRLSMAGCQLGVDGGQAIIAAIGSDREQFRLLDLDLANNSLGAGCGGLLGVALRRNETLTRLSLRANGLGPEGGASLAAGLARNCGMLKELVVADNRLGPGVATLVAATMHGGTSQCLRGFGYRAAPKTIQQRHRQDGGSREVCDDGDAAPPSEEGQQSALSPEKFDGGTKETQS--RPTSAVGKRSSRANGGNAQPVSFATTRHSSLGLQRTSALASPASR--TNGSRPSALAGEAGVGVMGSGSNEFQLLSTSDGAPTTADDDAAAFEEDLGRPQTAGTASG 313
            +RGG RL+IAALETS  LRRL++AGCQLGVDGGQA+IAAIGS R++FRLLDLDLANNSLGAGCG  L VALRRN+TLTRLSLRANGLGPEGG SLAAGLA NCG+LKE+VVADNRLGP VATLVAATM GGTS+CLRGFGYR AP T+ Q   Q           D APP             F+ G    QS  RP+  + + S   + G+   V+ A+ R S   LQRTSAL  P +R   N +      G A  G MG G+N+ ++L+ ++ +P TA    AA EEDLGRPQTAGTASG
Sbjct:  595 RRGGARLIIAALETSAHLRRLNLAGCQLGVDGGQAMIAAIGSGRDKFRLLDLDLANNSLGAGCGDSLAVALRRNKTLTRLSLRANGLGPEGGTSLAAGLASNCGVLKEVVVADNRLGPRVATLVAATMRGGTSECLRGFGYRPAP-TLSQPQPQPSDHLH-----DTAPP-------------FEKGADNDQSIPRPSRPLQRYSGENSCGSNPRVAAASVRESLSSLQRTSALEPPTARGRLNSTALPTTVGAA-EGTMGPGTNDLEVLARNNSSPITA---TAAIEEDLGRPQTAGTASG 873
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BLAST of mRNA_L-elsbetiae_contig9826.18775.1 vs. uniprot
Match: D8LGB3_ECTSI (Hypothetical leucine rich repeat and MORN motif protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB3_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 8.890e-83
Identity = 174/302 (57.62%), Postives = 210/302 (69.54%), Query Frame = 0 
Query:   16 KRGGVRLVIAALETSPCLRRLSMAGCQLGVDGGQAIIAAIGSDREQFRLLDLDLANNSLGAGCGGLLGVALRRNETLTRLSLRANGLGPEGGASLAAGLARNCGMLKELVVADNRLGPGVATLVAATMHGGTSQCLRGFGYRAAPKTIQQRHRQDGGSREVCDDGDAAPPSEEGQQSALSPEKFDGGTKETQSRPTS-AVGKRSSRANGGNAQP-VSFATTRHSSLGLQRTSAL--ASPASRTNGSRPSALAGEAGVGVMGSGSNEFQLLSTSDGAPTTADDDAAAFEEDLGRPQTAGTASG 313
            +RGG RL+IAALETS  LRRL++AGCQLGVDGGQA+IAAIGS R++FRL+DLDLA+NSLGAGCG  L VALRRN+TLTRLS+RANGLGPEGG +LAAGLA NCG+LK++VVADNRLGP VATLVAATM GGTS+CLRGFGYR AP  + +  +Q             APP             F+ G    QS P S    +R S  N   + P V+ A+ R S   LQRTSAL  ++   R N + P+   G AG G MG G+N+ ++L+ ++ +P TA    AA EEDLGRPQTAGTASG
Sbjct:  539 RRGGARLIIAALETSAHLRRLNLAGCQLGVDGGQAMIAAIGSGRDKFRLVDLDLASNSLGAGCGDPLAVALRRNKTLTRLSVRANGLGPEGGTALAAGLASNCGILKQVVVADNRLGPRVATLVAATMRGGTSECLRGFGYRPAP-ALSELQQQPSDHLHAT-----APP-------------FEKGADTDQSIPGSPGPSQRYSGENSCGSNPRVAAASMRESLSSLQRTSALEPSTARGRLNSTAPTTTVGAAG-GTMGPGTNDLEVLTRNNSSPITA---TAAIEEDLGRPQTAGTASG 817
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9826.18775.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4D7_9PHAE2.840e-8559.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGB3_ECTSI8.890e-8357.62Hypothetical leucine rich repeat and MORN motif pr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 30..57
e-value: 0.61
score: 18.7
coord: 89..116
e-value: 2.0E-4
score: 30.7
coord: 61..88
e-value: 8.4
score: 10.6
NoneNo IPR availablePANTHERPTHR24107FAMILY NOT NAMEDcoord: 25..292
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..313
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 21..133
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 30..51
e-value: 0.088
score: 12.9
coord: 89..111
e-value: 0.011
score: 15.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 12..152
e-value: 1.1E-20
score: 75.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9826contigL-elsbetiae_contig9826:5226..6840 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9826.18775.1mRNA_L-elsbetiae_contig9826.18775.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9826 4882..7100 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9826.18775.1 ID=prot_L-elsbetiae_contig9826.18775.1|Name=mRNA_L-elsbetiae_contig9826.18775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp
MKNVLFSSLLAYVREKRGGVRLVIAALETSPCLRRLSMAGCQLGVDGGQA
IIAAIGSDREQFRLLDLDLANNSLGAGCGGLLGVALRRNETLTRLSLRAN
GLGPEGGASLAAGLARNCGMLKELVVADNRLGPGVATLVAATMHGGTSQC
LRGFGYRAAPKTIQQRHRQDGGSREVCDDGDAAPPSEEGQQSALSPEKFD
GGTKETQSRPTSAVGKRSSRANGGNAQPVSFATTRHSSLGLQRTSALASP
ASRTNGSRPSALAGEAGVGVMGSGSNEFQLLSTSDGAPTTADDDAAAFEE
DLGRPQTAGTASG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf