prot_L-elsbetiae_contig9809.18763.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9809.18763.1
Unique Nameprot_L-elsbetiae_contig9809.18763.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length94
Homology
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BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Match: A0A6H5JMU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU7_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 7.130e-41
Identity = 71/91 (78.02%), Postives = 80/91 (87.91%), Query Frame = 0 
Query:    2 SCLLVYRSVPMYLRLMLIWTITTAFSGVFQPLLWLDNASDSVTEQWLVWTLLALSIAGMAGNILGALTVFPSAGASSGKARRRRYKTPVKE 92
            SCLLVYRSV +YLRLMLIWTITTAFSGVFQ LLWL+N+  S  E+ LVWT+L LSIAGMAGNI+GA+TVFPS G SSGKARRRRYK+ +KE
Sbjct:   81 SCLLVYRSVSLYLRLMLIWTITTAFSGVFQSLLWLENSGGSAIERGLVWTMLVLSIAGMAGNIIGAVTVFPSVGGSSGKARRRRYKSSLKE 171
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9809.18763.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMU7_9PHAE7.130e-4178.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..35
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 47..75
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 76..93
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9809contigL-elsbetiae_contig9809:4648..5405 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9809.18763.1mRNA_L-elsbetiae_contig9809.18763.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9809 3854..6834 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9809.18763.1 ID=prot_L-elsbetiae_contig9809.18763.1|Name=mRNA_L-elsbetiae_contig9809.18763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MSCLLVYRSVPMYLRLMLIWTITTAFSGVFQPLLWLDNASDSVTEQWLVW
TLLALSIAGMAGNILGALTVFPSAGASSGKARRRRYKTPVKES*
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