prot_L-elsbetiae_contig9624.18602.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig9624.18602.1
Unique Name	prot_L-elsbetiae_contig9624.18602.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	182

Homology

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BLAST of mRNA_L-elsbetiae_contig9624.18602.1 vs. uniprot
Match: A0A126WVC6_9PHAE (Putative LOV domain-containing protein n=2 Tax=Ectocarpales TaxID=2877 RepID=A0A126WVC6_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 8.760e-55
Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 0

Query:   92 SCRFLQGAKTDPGDVKKIRAAVEEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGKLAYFLGIQVQVKTAAPGQEPANPGWTYTMGLHA 181
            +CRFLQGAKTDPGDV KIR AV EKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEG LAYFLGIQVQVKTAAPGQEPANPGW YTMGLHA
Sbjct:   79 NCRFLQGAKTDPGDVTKIREAVTEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGTLAYFLGIQVQVKTAAPGQEPANPGWIYTMGLHA 168

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BLAST of mRNA_L-elsbetiae_contig9624.18602.1 vs. uniprot
Match: A0A126X2E3_9PHAE (Putative LOV domain-containing protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A126X2E3_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.220e-51
Identity = 78/90 (86.67%), Postives = 83/90 (92.22%), Query Frame = 0

Query:   92 SCRFLQGAKTDPGDVKKIRAAVEEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGKLAYFLGIQVQVKTAAPGQEPANPGWTYTMGLHA 181
            +CRFLQGAKTDPGD+ KIR AV+EKKEACLCLLNYKKDGS FHNQFFLTP+FDAEGKLAY+LGIQVQVKT A GQEP NPGW YTMGLHA
Sbjct:   76 NCRFLQGAKTDPGDITKIREAVKEKKEACLCLLNYKKDGSIFHNQFFLTPLFDAEGKLAYYLGIQVQVKTGADGQEPENPGWVYTMGLHA 165

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BLAST of mRNA_L-elsbetiae_contig9624.18602.1 vs. uniprot
Match: A0A126WXS3_9PHAE (Putative LOV domain-containing protein n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A126WXS3_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 6.070e-50
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 0

Query:   92 SCRFLQGAKTDPGDVKKIRAAVEEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGKLAYFLGIQVQVKTAAPGQEPANPGWTYTMGLHA 181
            +CRFLQGAKTDPGDV KIR+AV EK+EACLCLLNYKKDGSTF+NQFFLTP+FDAEG LAYFLGIQVQVKT   GQEP NPGW YTMGLHA
Sbjct:   78 NCRFLQGAKTDPGDVAKIRSAVSEKREACLCLLNYKKDGSTFNNQFFLTPLFDAEGTLAYFLGIQVQVKTGDKGQEPENPGWVYTMGLHA 167

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BLAST of mRNA_L-elsbetiae_contig9624.18602.1 vs. uniprot
Match: A0A6H5L122_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L122_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 4.640e-49
Identity = 75/90 (83.33%), Postives = 80/90 (88.89%), Query Frame = 0

Query:   92 SCRFLQGAKTDPGDVKKIRAAVEEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGKLAYFLGIQVQVKTAAPGQEPANPGWTYTMGLHA 181
            +CRFLQGAKTDPGD  KIR A++E KEACLCLLNYKKDGSTFHNQFFLTP+FD  G LAYFLGIQVQVKTA+ GQEP NPGW YTMGLHA
Sbjct:   76 NCRFLQGAKTDPGDTAKIREAIKENKEACLCLLNYKKDGSTFHNQFFLTPLFDEGGTLAYFLGIQVQVKTASDGQEPENPGWVYTMGLHA 165

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BLAST of mRNA_L-elsbetiae_contig9624.18602.1 vs. uniprot
Match: A0A126WZ19_SARFS (Putative LOV domain-containing protein n=6 Tax=Sargassum TaxID=3015 RepID=A0A126WZ19_SARFS)

HSP 1 Score: 130 bits (326), Expect = 4.190e-35
Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 0

Query:   92 SCRFLQGAKTDPGDVKKIRAAVEEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGKLAYFLGIQVQVKTAAPGQEPA-NPGWTYTMGL 179
            +CRFLQGAKTDPGD+ +IR A++E KEACLCL+NYKKDGS F+NQF+L P+FDA G+LAYFLGIQV+V+T    Q+P  N GW +TM L
Sbjct:   78 NCRFLQGAKTDPGDIAEIRDAIKENKEACLCLINYKKDGSAFNNQFYLVPLFDAGGQLAYFLGIQVEVETLDDEQQPPKNLGWLHTMCL 166

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BLAST of mRNA_L-elsbetiae_contig9624.18602.1 vs. uniprot
Match: A0A6U0JAP0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JAP0_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.840e-32
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 0

Query:   92 SCRFLQGAKTDPGDVKKIRAAVEEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGKLAYFLGIQVQVKTAAPGQEPANPGWTYTMGLHA 181
            +CRFLQG  T+  DV KIR+A++ +KE  + LLNYKKDG++F+N+FFL+P+++ +GKLAY++G+Q  VK   PGQ PANPGW Y  GLHA
Sbjct:  127 NCRFLQGPGTEKADVDKIRSAIKSEKEESVNLLNYKKDGTSFNNEFFLSPLYEEDGKLAYYIGVQCSVKKLGPGQAPANPGWVYAQGLHA 216

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BLAST of mRNA_L-elsbetiae_contig9624.18602.1 vs. uniprot
Match: A0A7S4J4U8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J4U8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.220e-28
Identity = 49/90 (54.44%), Postives = 66/90 (73.33%), Query Frame = 0

Query:   92 SCRFLQGAKTDPGDVKKIRAAVEEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGKLAYFLGIQVQVKTAAPGQEPANPGWTYTMGLHA 181
            +CRFLQG +T   DV +IR A++E+KE C+ LLNY+KDGS+F N+FF++P+ D   KLAYF+G+Q  V    PGQ P+N GW Y+ G HA
Sbjct:   91 NCRFLQGTETSTEDVDRIRKAIKEQKEECVNLLNYRKDGSSFINEFFISPLLDDNEKLAYFIGVQCSVPKKGPGQMPSNAGWVYSQGNHA 180

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BLAST of mRNA_L-elsbetiae_contig9624.18602.1 vs. uniprot
Match: K0R341_THAOC (PAS domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R341_THAOC)

HSP 1 Score: 111 bits (278), Expect = 2.150e-27
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 0

Query:   92 SCRFLQGAKTDPGDVKKIRAAVEEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGKLAYFLGIQVQVKTAAPGQEPANPGWTYTMGLHA 181
            +CRFLQG++T   DV +IR+A++ + EA + LLNYKKDG+ F+NQFFL P+ DA+ + AY++G+Q  VK   PGQ P N GW Y  G+HA
Sbjct:  122 NCRFLQGSETRKEDVDRIRSAIKSQTEASVNLLNYKKDGTAFNNQFFLAPLRDADERTAYYIGVQCSVKRLGPGQAPENMGWVYAQGIHA 211

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BLAST of mRNA_L-elsbetiae_contig9624.18602.1 vs. uniprot
Match: A0A7S2I3C2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I3C2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.090e-27
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = 0

Query:   92 SCRFLQGAKTDPGDVKKIRAAVEEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGKLAYFLGIQVQVKTAAPGQEPANPGWTYTMGLHA 181
            +CRFLQG +T+  DV +IRAA++ +    + LLNYKKDG+ F N+FF++P+ D   KL YF+G+QV+V    PGQ P+NPGW YT+G H+
Sbjct:   93 NCRFLQGPETEKSDVDRIRAAIKSEVATNVNLLNYKKDGTKFINEFFISPLRDENQKLLYFIGVQVEVPKQGPGQAPSNPGWVYTVGNHS 182

[Close]

BLAST of mRNA_L-elsbetiae_contig9624.18602.1 vs. uniprot
Match: A0A7S3QJQ0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJQ0_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.800e-26
Identity = 52/92 (56.52%), Postives = 63/92 (68.48%), Query Frame = 0

Query:   92 SCRFLQGAKTDPGDVKKIRAAVEEKKEACLCLLNYKKDGSTFHNQFFLTPMF--DAEGKLAYFLGIQVQVKTAAPGQEPANPGWTYTMGLHA 181
            +CRFLQG KT   DV  IR A++E+ E  + LLNY+KDG+TF NQFFL P+   D   K AY++G+Q  V T  PGQ PANPGW YT G HA
Sbjct:   99 NCRFLQGPKTSKEDVDAIRKAIKEETEVNVNLLNYRKDGATFVNQFFLAPLHYRDDPVKAAYYIGVQCSVPTLGPGQMPANPGWVYTQGNHA 190

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig9624.18602.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig9624.18602.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A126WVC6_9PHAE	8.760e-55	93.33	Putative LOV domain-containing protein n=2 Tax=Ect...	[more]
A0A126X2E3_9PHAE	1.220e-51	86.67	Putative LOV domain-containing protein n=2 Tax=Scy...	[more]
A0A126WXS3_9PHAE	6.070e-50	85.56	Putative LOV domain-containing protein n=1 Tax=Des...	[more]
A0A6H5L122_9PHAE	4.640e-49	83.33	PAS domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A126WZ19_SARFS	4.190e-35	67.42	Putative LOV domain-containing protein n=6 Tax=Sar...	[more]
A0A6U0JAP0_9STRA	2.840e-32	57.78	Hypothetical protein n=1 Tax=Minutocellus polymorp...	[more]
A0A7S4J4U8_9STRA	1.220e-28	54.44	Hypothetical protein n=2 Tax=Odontella aurita TaxI...	[more]
K0R341_THAOC	2.150e-27	53.33	PAS domain-containing protein n=1 Tax=Thalassiosir...	[more]
A0A7S2I3C2_9STRA	8.090e-27	52.22	Hypothetical protein n=1 Tax=Helicotheca tamesis T...	[more]
A0A7S3QJQ0_9STRA	2.800e-26	56.52	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000014	PAS domain	PFAM	PF13426	PAS_9	coord: 92..157 e-value: 3.2E-7 score: 30.5
None	No IPR available	GENE3D	3.30.450.20		coord: 91..170 e-value: 2.7E-22 score: 81.2
None	No IPR available	PANTHER	PTHR47429	FAMILY NOT NAMED	coord: 91..162
None	No IPR available	PANTHER	PTHR47429:SF2	PROTEIN TWIN LOV 1	coord: 91..162
IPR035965	PAS domain superfamily	SUPERFAMILY	55785	PYP-like sensor domain (PAS domain)	coord: 91..156

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig9624	contig	L-elsbetiae_contig9624:672..3035 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig9624.18602.1	mRNA_L-elsbetiae_contig9624.18602.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig9624 495..4605 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig9624.18602.1 ID=prot_L-elsbetiae_contig9624.18602.1|Name=mRNA_L-elsbetiae_contig9624.18602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
MHCCNLEKYIHTTTQFAVPTYQLVCFVHDPSYGPFTPAPPAKSACPIYFY
DCSCVNPRPPSTLFPVIIHAAPSARLALSGCNCLAPGFPPCSCRFLQGAK
TDPGDVKKIRAAVEEKKEACLCLLNYKKDGSTFHNQFFLTPMFDAEGKLA
YFLGIQVQVKTAAPGQEPANPGWTYTMGLHA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000014	PAS
IPR035965	PAS-like_dom_sf