prot_L-elsbetiae_contig9623.18601.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9623.18601.1
Unique Nameprot_L-elsbetiae_contig9623.18601.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length128
Homology
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BLAST of mRNA_L-elsbetiae_contig9623.18601.1 vs. uniprot
Match: D8LGY5_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY5_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 2.680e-63
Identity = 102/127 (80.31%), Postives = 107/127 (84.25%), Query Frame = 0 
Query:    2 PRGRRPRRRSRSGDGVVLANRKTEICLHWQNGCCPYGAGSCAFAHGIGELRHPTLDDEAIARSVSEDSESCPSSRDDTPCDHRGAAIGRVPPSPCERRLPTFVGLSTGTTPKKGSGSSRRFSSPGIR 128
            PRGRRPRRRSRSGDGVVLANRKTEICLHWQ G CPYGAGSCAFAHG+GELRHPTLDDEAIARSVSEDS SCPSSRD +     G  IGRVP SPCERRLPTFV LSTG TP +GS  +R +SSP  R
Sbjct:   14 PRGRRPRRRSRSGDGVVLANRKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATR 140
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9623.18601.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY5_ECTSI2.680e-6380.31C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 21..48
e-value: 1.6E-6
score: 37.6
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 21..49
score: 14.314
NoneNo IPR availableGENE3D4.10.1000.10coord: 20..53
e-value: 4.5E-10
score: 40.8
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 20..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9623contigL-elsbetiae_contig9623:5177..7519 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9623.18601.1mRNA_L-elsbetiae_contig9623.18601.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9623 5168..7519 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9623.18601.1 ID=prot_L-elsbetiae_contig9623.18601.1|Name=mRNA_L-elsbetiae_contig9623.18601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MPRGRRPRRRSRSGDGVVLANRKTEICLHWQNGCCPYGAGSCAFAHGIGE
LRHPTLDDEAIARSVSEDSESCPSSRDDTPCDHRGAAIGRVPPSPCERRL
PTFVGLSTGTTPKKGSGSSRRFSSPGIR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR036855Znf_CCCH_sf