prot_L-elsbetiae_contig958.18557.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig958.18557.1
Unique Nameprot_L-elsbetiae_contig958.18557.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length593
Homology
BLAST of mRNA_L-elsbetiae_contig958.18557.1 vs. uniprot
Match: D8LBS9_ECTSI (Ankyrin repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS9_ECTSI)

HSP 1 Score: 615 bits (1586), Expect = 1.150e-202
Identity = 442/598 (73.91%), Postives = 458/598 (76.59%), Query Frame = 0
Query:    1 MEEDQQGETWACEVCTFHNRDGASSCEMCGTPNPATSAAGGAG--AAGGDD-ESSAAYXXXXXXXXXXXXXXXXXXXXXXXXXXQRARAKEAGDGASEDGVTPALLARLSRDGHFSLQNYLTKLCHTLALAAAEAETGLSRPSIDRAFIPVLLELMSDPGSRRGPDVPLQACRALNYFLQIGAAGDVAVQRGMRTYALCITCAATAGTAEYQELGQEAVSGVDLLCRTSAEFLRELAETDIGGGGGRVLASFVRGVYRTPGGSRRGSISASPAGHSPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LSLLPLLLELHPRPTGASQPTKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELEAILGALLAVIRGASASNREAALTALGSKVLPRLGGAAAGGREWLGELITDEDLLVAAIEDRSSRGAACHQRALGLTYRLLASSPELMSLALEPGCPLLPAVLDALGDGGSGG-GGIVAGETPGSRVAGSAGAPKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSEAAGRSGLAVLRIVGLVRA 593
            MEED QGETWACE CTFHNR GASSCEMCGTPNP+  AAGGAG  A G DD  SSAAYXXXXXXXXXXXXXXXXXXXXXXXXXX   +AKEAGDG +EDGVTPALL+RLSRDGHFSLQNYLTKLCHTLALAAAEAETGLSRP+IDRAFIPVLLELMSDPGSRRGPDVPLQACRALNYFLQIGAA DV VQRGMRTYALCITC+ATAGTAEYQELGQEAVSGVDLLCRTSAEFLRELAETDIGGGGGRVLASFVRGVYR+ GGSRRGS+SASP GHSPGG                  XXXXXXXXXX   LSLLPL+LELHPRP GA             XXXXXXXXXXXXXXXXXXX                                 EL+AIL ALLAV+RGASASNRE AL  LGSKVLPRLGGAAAGGREWLGELITD+DLLVAAIEDRSSR AACHQRALGLTY+LLASSPELMSLALEPGCPL PAVLDALGDGG GG GG  +G  PG   +GS+      XXXXXXXXXXXXXXX                               DSEAAGRSGLAVLRIVGLV A
Sbjct:    1 MEEDDQGETWACEACTFHNRVGASSCEMCGTPNPSM-AAGGAGSTADGADDGSSSAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAKEAGDGTAEDGVTPALLSRLSRDGHFSLQNYLTKLCHTLALAAAEAETGLSRPNIDRAFIPVLLELMSDPGSRRGPDVPLQACRALNYFLQIGAASDVGVQRGMRTYALCITCSATAGTAEYQELGQEAVSGVDLLCRTSAEFLRELAETDIGGGGGRVLASFVRGVYRSSGGSRRGSVSASPVGHSPGGSGAGLAVEDRRNNRAGGAXXXXXXXXXXAKALSLLPLILELHPRPAGAPX-----------XXXXXXXXXXXXXXXXXXXASVVSALQGKETAPTGVVGDDEHADADAGDGDDELQAILEALLAVLRGASASNREVALATLGSKVLPRLGGAAAGGREWLGELITDKDLLVAAIEDRSSRSAACHQRALGLTYQLLASSPELMSLALEPGCPLFPAVLDALGDGGGGGLGGDASGSRPGMDGSGSSXXXXXXXXXXXXXXXXXXXXXAPGTPRSAPRTPRLAGMSGDGRRMSRTGGAADSEAAGRSGLAVLRIVGLVAA 586          
BLAST of mRNA_L-elsbetiae_contig958.18557.1 vs. uniprot
Match: A0A6H5KW24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW24_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 4.950e-92
Identity = 264/409 (64.55%), Postives = 273/409 (66.75%), Query Frame = 0
Query:  190 MRTYALCITCAATAGTAEYQELGQEAVSGVDLLCRTSAEFLRELAETDIGGGGGRVLASFVRGVYRTPGGSRRGSISASPAGHSPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLLPLLLELHPRPTGASQPTKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELEAILGALLAVIRGASASNREAALTALGSKVLPRLGGAAAGGREWLGELITDEDLLVAAIEDRSSRGAACHQRALGLTYRLLASSPELMSLALEPGCPLLPAVLDALGDGGSGGGGIVAGET-----PGSRVAGSAGAPKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSEAAGRSGLAVLRIVGLVRA 593
            MRTYALCITC+ATAGTAEYQELGQEAVSGVDLLCRTSAEFLRELAETDIGGGGGRVLASFVRGVYR+ G    GSISASP GHSPGG                              LSLLPL+LELHPRP GA              XXXXXXXXXXXXXXXXXXX                                EL+A+L ALLAV+RGASASNRE AL  LGSKVLPRLGGAAAGGREWLGELITD+DLLVAAIEDRS RGAACHQRALGLTY+LLASSPELMSL LEPGCPL PAVLDALGD G GG G  A  +                    XXXXXXXXXXXXXXXXXXXXXXXXXXXX                  DSEAAGRSGLAVLRIVGLV A
Sbjct:    1 MRTYALCITCSATAGTAEYQELGQEAVSGVDLLCRTSAEFLRELAETDIGGGGGRVLASFVRGVYRSSG----GSISASPLGHSPGGSGAGLAAEDRRNNRAGGAGAGAEEAVAKA-LSLLPLILELHPRPAGAPX------------XXXXXXXXXXXXXXXXXXXSVVSALQGKETATTGVIGDDEHADADAGDGDDELQAMLDALLAVLRGASASNREVALATLGSKVLPRLGGAAAGGREWLGELITDKDLLVAAIEDRSLRGAACHQRALGLTYQLLASSPELMSLVLEPGCPLFPAVLDALGDSGGGGLGXDAXXSRPXMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGMSGDGRRMSRTGGAADSEAAGRSGLAVLRIVGLVAA 392          
BLAST of mRNA_L-elsbetiae_contig958.18557.1 vs. uniprot
Match: A0A836CMD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD4_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.810e-38
Identity = 168/503 (33.40%), Postives = 207/503 (41.15%), Query Frame = 0
Query:    8 ETWACEVCTFHNRDGASSCEMCGTPNPATSAAGGAGAAGGDDESSAAYXXXXXXXXXXXXXXXXXXXXXXXXXXQRARAKEAGDGASEDGVTPALLARLSRDGHFSLQNYLTKLCHTLALAAAEAETGLSRPSIDRAFIPVLLELM----SDPGSRRGPDVPLQACRALNYFLQIGA--AGDVAVQRGMRTYALCITCAATAGTAEYQELGQEAVSGVDLLCRTSAEFLRELAETDIGGGGGRVLASFVRGVYRTPGGSRRGSISASPAGHSPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLLPLLLELHPRPTGASQPTKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELEAILGALLAVIRGASASNREAALTALGSKVLPRLG----GAAAGGREWLGELITDEDLLVAAIEDRSSRGAACHQRALGLTYRLLASSPELMSLALEPGCPLLPAVLDALGDGG 500
            E W+CE CT+HN     +CEMCGTP PA                           XXXXXXXXXXXXX                             RL+ DGHFSL  YLT+LC  LA+  A AE+G+ RP++D  +I VL+ ++    +     R  + PL ACRALNYFL +GA  A +V  + G+     C++ A T  T   QEL QEAV GVDLL R+SA+ LR L E   GG G R++ SF+   YR     +RG +    +   PG                               L LL LLLE      GAS                                                                  +A L  L        A+     L+   S   P  G    G AAG    LG L+ DE LLVAAI  RS+   ACH +AL L  +LL+ SPEL SLAL P C LLP +L  L DGG
Sbjct:   10 EGWSCEACTYHNTVSMPACEMCGTPAPAA--------------------------XXXXXXXXXXXXXPPATPGYXXXXXXXXXXXXXXXXXXXXXXRLAADGHFSLATYLTELCQELAIGVAHAESGMGRPTVDAGYIRVLVGIVGARDAAAARSRSQEAPLLACRALNYFLTLGASYAAEVGDRGGLGALLHCLSLACTGDTTSLQELAQEAVKGVDLLVRSSADNLRRLLE---GGQGLRIVCSFIASAYR-----KRGRVVRMDSRDGPG---------VDDGSAAGAPPSSATEAAVARGLELLRLLLETSWHRRGASATLNAVSADEVEAVMDALCAALRNGRGDNK------------------------------------DAALQLL--------ATRVAPRLSPSPSHTRPPPGQEGDGGAAGA---LGVLLLDEGLLVAAIRQRSAGDLACHLQALSLVTQLLSGSPELCSLALAPSCSLLPVLLSMLEDGG 422          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig958.18557.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LBS9_ECTSI1.150e-20273.91Ankyrin repeat-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KW24_9PHAE4.950e-9264.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CMD4_9STRA1.810e-3833.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 54..78
e-value: 0.047
score: 22.4
coord: 8..32
e-value: 8.6E-7
score: 38.6
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 55..79
e-value: 4.9E-4
score: 19.4
coord: 9..34
e-value: 8.2E-5
score: 21.8
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 10..29
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 56..75
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 5..35
score: 9.202
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 52..81
score: 8.321
NoneNo IPR availableGENE3D4.10.1060.10coord: 4..42
e-value: 1.5E-9
score: 38.8
NoneNo IPR availablePANTHERPTHR12920:SF4GEO03726P1coord: 50..77
coord: 5..31
IPR039958RING1 and YY1-binding protein/YY1-associated factor 2PANTHERPTHR12920RYBP AND YAF2-RELATEDcoord: 50..77
coord: 5..31
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 52..77
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 6..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig958contigL-elsbetiae_contig958:22653..30635 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig958.18557.1mRNA_L-elsbetiae_contig958.18557.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig958 22483..30635 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig958.18557.1 ID=prot_L-elsbetiae_contig958.18557.1|Name=mRNA_L-elsbetiae_contig958.18557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=593bp
MEEDQQGETWACEVCTFHNRDGASSCEMCGTPNPATSAAGGAGAAGGDDE
SSAAYWSCQACTMQNPSVTFTCHVCGTVDEAQRARAKEAGDGASEDGVTP
ALLARLSRDGHFSLQNYLTKLCHTLALAAAEAETGLSRPSIDRAFIPVLL
ELMSDPGSRRGPDVPLQACRALNYFLQIGAAGDVAVQRGMRTYALCITCA
ATAGTAEYQELGQEAVSGVDLLCRTSAEFLRELAETDIGGGGGRVLASFV
RGVYRTPGGSRRGSISASPAGHSPGGGGGAGLAAPEDRRNSRAGAGAGAE
TAVAKALSLLPLLLELHPRPTGASQPTKQQEEAATTGVAAAAASISSADA
AVSGPEGKEAGVVVAGEGGGGGGQKAGCSRGGGGGGDDELEAILGALLAV
IRGASASNREAALTALGSKVLPRLGGAAAGGREWLGELITDEDLLVAAIE
DRSSRGAACHQRALGLTYRLLASSPELMSLALEPGCPLLPAVLDALGDGG
SGGGGIVAGETPGSRVAGSAGAPKSGEGGGGGGGGGGVSGTPRSAPRTPR
LTGMPGGDGRRAGRGGGGGGAADSEAAGRSGLAVLRIVGLVRA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR039958RYBP/YAF2
IPR036443Znf_RanBP2_sf