mRNA_L-elsbetiae_contig9349.18347.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9349.18347.1
Unique NamemRNA_L-elsbetiae_contig9349.18347.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: D7G5S1_ECTSI (Putaive LSm10 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S1_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 3.940e-60
Identity = 104/144 (72.22%), Postives = 117/144 (81.25%), Query Frame = 1
Query:    1 RSGGRPRTTKKKTQPLERTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKIL--GKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQGYRRQMLKPKPSRAPP 426
            R+G RP+  +KKT PLE+TLAILIQSMRG K+VVE+KND EISGILEETDR+MK     LA   L   + G    LSMVDVRQTNPDGSV+KM+VVLVQG+MIRYVHIPD+VDAI NLQ HMRTMDQQGY R MLKPK S+APP
Sbjct:    4 RAGNRPQPRQKKTSPLEKTLAILIQSMRGNKIVVEMKNDAEISGILEETDRNMKAATVWLAAYGLTCSRAGPAPSLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQGYHRNMLKPKLSQAPP 147          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A6H5JYY5_9PHAE (Sm domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY5_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.540e-40
Identity = 75/107 (70.09%), Postives = 83/107 (77.57%), Query Frame = 1
Query:  106 LKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQGYRRQMLKPKPSRAPP 426
            +KND EISGILEETDR+M                   +LSMVDVRQTNPDGSV+KM+VVLVQG+MIRYVHIPD+VDAI NLQ HMRTMDQQGYRR MLKPK S+APP
Sbjct:    1 MKNDAEISGILEETDRNM-------------------NLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQGYRRNMLKPKTSQAPP 88          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A5D6XV54_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV54_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.790e-11
Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = 1
Query:   52 RTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQ 375
            R+L +L++S+ G +V V+LKND  + G++ E    M                   D +MVD  +T P+G++ +M+ V V GR I YVHIPD ++  ++LQ + R + Q
Sbjct:   42 RSLLLLLKSLVGLRVRVDLKNDATVEGVVAEVVHDM-------------------DFTMVDACETKPNGAMVRMDEVFVMGRTILYVHIPDRINLTQHLQQYTRMVRQ 130          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A1V9ZKH8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKH8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.840e-10
Identity = 41/120 (34.17%), Postives = 63/120 (52.50%), Query Frame = 1
Query:   52 RTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQD--HMRTMDQQGYRRQMLKP 405
            RTL I++QSM G +V +ELK +  + G +EE    M                   D+ +  VRQ  P G V + + + V G+MI YVHIPD V+   +++D  HM   +++ Y+R + KP
Sbjct:    8 RTLLIVLQSMLGMEVTIELKTEHVLVGTVEEVTEGM-------------------DVRLSHVRQVGPSGRVLEFDELYVMGKMILYVHIPDRVNINAHMKDYVHMVERNKKMYKRAVRKP 108          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: W4H8K5_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8K5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 8.140e-10
Identity = 37/124 (29.84%), Postives = 65/124 (52.42%), Query Frame = 1
Query:   52 RTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQGYRRQMLKPKPSRAP 423
            R++ +L+QSM G  V +ELK +  + G +EE      D R                  + +V+QT+P G++  ++ V V G+MI +VH+PD ++   +L+D+M+ +D+     Q    KP+  P
Sbjct:    6 RSVVVLLQSMLGMDVKIELKTEYVLEGRVEEVGEGNMDVR------------------LTNVKQTSPQGAIVHLDEVFVMGKMILFVHLPDRLNVAVHLRDYMQMVDKNRSMYQRSTRKPATTP 111          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A8K1CIL4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIL4_PYTOL)

HSP 1 Score: 62.4 bits (150), Expect = 1.040e-9
Identity = 36/116 (31.03%), Postives = 63/116 (54.31%), Query Frame = 1
Query:   28 KKKTQPLERTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQ 375
            KK+ +P  R+L +L++S+ G +V ++LKND  + GI+EE    M                   D +++D  +T P+G   ++  V V G+ + YVHIPD ++  ++LQ + R + Q
Sbjct:   14 KKRRRP--RSLLLLLKSLAGLRVRIDLKNDCVVEGIVEEVLHDM-------------------DFTLLDACETKPNGRTVRLEEVFVMGKTVLYVHIPDRINISQHLQQYNRMIRQ 108          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A024UUS1_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUS1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.610e-9
Identity = 37/120 (30.83%), Postives = 63/120 (52.50%), Query Frame = 1
Query:   52 RTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQG--YRRQMLKP 405
            R++ +L+QSM G  V +ELK +  + G +EE      D R                  +  V+QT+P G++  ++ V V G+MI +VH+PD ++   +L+D+M  +D+    Y+R   KP
Sbjct:    6 RSVVLLLQSMLGMDVKIELKTEYTLEGRVEEVGEGNMDVR------------------LTGVKQTSPQGAIVHLDEVFVMGKMILFVHLPDRLNVAAHLRDYMHLVDKNKNLYQRSTRKP 107          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: T1IY48_STRMM (Sm domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IY48_STRMM)

HSP 1 Score: 61.6 bits (148), Expect = 2.340e-9
Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 1
Query:   55 TLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVD 333
            TL  L++S+  K   +ELKN++ ++G +E  D  M                   ++ M DV    P+GS+KK     +QGR +RYVHIPD+VD
Sbjct:   12 TLVCLVKSLEKKATTIELKNESSVTGNIESVDAYM-------------------NVQMNDVVFLAPNGSLKKFQTFFIQGRQVRYVHIPDDVD 85          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: A0A1Y1HWH1_KLENI (Sm domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWH1_KLENI)

HSP 1 Score: 61.2 bits (147), Expect = 3.020e-9
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 1
Query:   28 KKKTQPLERTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDA 336
            KKK +  ER+L  +IQ++ G KV+VELKND  + G+LEE D  M                   ++ + D  Q N  G   ++ ++ +QGR IR++HIP  V+ 
Sbjct:    3 KKKGRASERSLICVIQALVGMKVLVELKNDVTVKGVLEECDLGM-------------------NIVIKDAIQENLQGIKTELALMFIQGRRIRFIHIPKSVNV 86          
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Match: UPI0003F08E1D (uncharacterized protein LOC100367675 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08E1D)

HSP 1 Score: 62.8 bits (151), Expect = 7.110e-9
Identity = 34/117 (29.06%), Postives = 63/117 (53.85%), Query Frame = 1
Query:   49 ERTLAILIQSMRGKKVVVELKNDTEISGILEETDRSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRMIRYVHIPDEVDAIRNLQDHMRTMDQQGYRRQML 399
            E TL  L+Q++ GK  V+EL+N++ ++G+++  D  M                   ++ M DV   N DG V  ++   VQG+MIR+V IPDEV+ +  ++  + +  ++  R++ +
Sbjct:   29 ENTLICLLQALTGKSTVIELRNESTVTGVIDSVDAYM-------------------NVFMSDVEFVNADGQVMILSNFFVQGKMIRFVQIPDEVNIVTAIKSQLSSWQERRTRKERV 126          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9349.18347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5S1_ECTSI3.940e-6072.22Putaive LSm10 protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JYY5_9PHAE1.540e-4070.09Sm domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A5D6XV54_9STRA3.790e-1134.26Sm domain-containing protein n=1 Tax=Pythium brass... [more]
A0A1V9ZKH8_9STRA1.840e-1034.17Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W4H8K5_9STRA8.140e-1029.84Sm domain-containing protein n=1 Tax=Aphanomyces a... [more]
A0A8K1CIL4_PYTOL1.040e-931.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024UUS1_9STRA1.610e-930.83Sm domain-containing protein n=1 Tax=Aphanomyces i... [more]
T1IY48_STRMM2.340e-935.48Sm domain-containing protein n=1 Tax=Strigamia mar... [more]
A0A1Y1HWH1_KLENI3.020e-934.95Sm domain-containing protein n=1 Tax=Klebsormidium... [more]
UPI0003F08E1D7.110e-929.06uncharacterized protein LOC100367675 n=1 Tax=Sacco... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9349contigL-elsbetiae_contig9349:3534..6032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue4.3e-10
Seed eggNOG ortholog36331.EPrPI00000014585
Preferred nameLSM10
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005683,GO:0005737,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006398,GO:0006725,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0008334,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010564,GO:0015030,GO:0016070,GO:0016071,GO:0016604,GO:0017069,GO:0018130,GO:0019438,GO:0030532,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0035363,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045931,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070013,GO:0071208,GO:0071209,GO:0071254,GO:0071704,GO:0090068,GO:0090304,GO:0097159,GO:0097659,GO:0120114,GO:1900087,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:1990904,GO:2000045
EggNOG free text desc.Putaive LSm10 protein. Source PGD
EggNOG OGs1MHKJ@121069,COG1958@1,KOG3428@2759
COG Functional cat.K
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPutaive LSm10 protein
Ec32 orthologEc-12_008900.1
Exons6
Model size429
Cds size429
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9349.18347.1prot_L-elsbetiae_contig9349.18347.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9349 3534..6032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817004.207302-CDS-L-elsbetiae_contig9349:3533..36051622817004.207302-CDS-L-elsbetiae_contig9349:3533..3605Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9349 3534..3605 -
1691683976.0359876-CDS-L-elsbetiae_contig9349:3533..36051691683976.0359876-CDS-L-elsbetiae_contig9349:3533..3605Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9349 3534..3605 -
1622817004.2183907-CDS-L-elsbetiae_contig9349:3918..40201622817004.2183907-CDS-L-elsbetiae_contig9349:3918..4020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9349 3919..4020 -
1691683976.0519378-CDS-L-elsbetiae_contig9349:3918..40201691683976.0519378-CDS-L-elsbetiae_contig9349:3918..4020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9349 3919..4020 -
1622817004.2296815-CDS-L-elsbetiae_contig9349:4356..43931622817004.2296815-CDS-L-elsbetiae_contig9349:4356..4393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9349 4357..4393 -
1691683976.065334-CDS-L-elsbetiae_contig9349:4356..43931691683976.065334-CDS-L-elsbetiae_contig9349:4356..4393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9349 4357..4393 -
1622817004.2418118-CDS-L-elsbetiae_contig9349:4923..49801622817004.2418118-CDS-L-elsbetiae_contig9349:4923..4980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9349 4924..4980 -
1691683976.0763226-CDS-L-elsbetiae_contig9349:4923..49801691683976.0763226-CDS-L-elsbetiae_contig9349:4923..4980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9349 4924..4980 -
1622817004.2563922-CDS-L-elsbetiae_contig9349:5084..51701622817004.2563922-CDS-L-elsbetiae_contig9349:5084..5170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9349 5085..5170 -
1691683976.0916183-CDS-L-elsbetiae_contig9349:5084..51701691683976.0916183-CDS-L-elsbetiae_contig9349:5084..5170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9349 5085..5170 -
1622817004.2710505-CDS-L-elsbetiae_contig9349:5957..60321622817004.2710505-CDS-L-elsbetiae_contig9349:5957..6032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9349 5958..6032 -
1691683976.106926-CDS-L-elsbetiae_contig9349:5957..60321691683976.106926-CDS-L-elsbetiae_contig9349:5957..6032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9349 5958..6032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9349.18347.1

>prot_L-elsbetiae_contig9349.18347.1 ID=prot_L-elsbetiae_contig9349.18347.1|Name=mRNA_L-elsbetiae_contig9349.18347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
RSGGRPRTTKKKTQPLERTLAILIQSMRGKKVVVELKNDTEISGILEETD
RSMKDGRTLLATKILGKHGRREDLSMVDVRQTNPDGSVKKMNVVLVQGRM
IRYVHIPDEVDAIRNLQDHMRTMDQQGYRRQMLKPKPSRAPP*
back to top

mRNA from alignment at L-elsbetiae_contig9349:3534..6032-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9349.18347.1 ID=mRNA_L-elsbetiae_contig9349.18347.1|Name=mRNA_L-elsbetiae_contig9349.18347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2499bp|location=Sequence derived from alignment at L-elsbetiae_contig9349:3534..6032- (Laminarionema elsbetiae ELsaHSoW15)
CGATCTGGCGGTCGGCCGCGAACTACCAAAAAAAAGACACAGCCACTGGA GCGGACTCTGGCTATTTTGATACAAGTAAGAGCCAAGAGAGACGTCAGTC AGTGTTTAATTAGACTAAAATGTATACAAATGCAGCTAGCTATCGCTGAT CGCTATCGCTATCAGCTGTGTAGAGCTATCCGGGCATGTAGCTGTCTGCA GGCAGCTAGCTGCGCAGCCTTTTGAAACAATAGCTGTCTGCAGGCAGCTA GATGCGCAGCTCATCGAAGCAATGGCTGCCTGCCAGACAGCTGGCCGCTA CAGTAGCTGTACAGGGTGTGCAATCGGTACGTCCAGTCAGTGAAAAAGCT GTTCCAGACTGTTAATGAGTTTTTGGGACAAGAGTACTATACGAAGAAGA CTACCAAAATACCAAAATGGCCGAACGGTGCGCTGCTTCTAAATTTGTAC GGACCCTCATCCGAGCGCTGGCAAACGTGTGGGTATGTTTTCTCCTTCCC ATTTATTTTGCCGACAGTCCCCCCAAGTGGAGACGTGTACTACACCTTGC GGTGTACTTAGAGGTACTACACTTTGCAGTGCATTTGTCTGTACAACTAG AACCAACCGGGGTCACACAGGAGGAGGTGAACACTGGGGCGTTTTCTTCT TTTTTATTTTATTTTCTTGTGGGTATGCGTAAGAAAAAGTAAAAAATGGC CAAGAGAGCAGCGGAGATGATGATTTGCACCCACCGACCGTTTAGTTGTA CACGCTTCGGGTGGTGGTGTGGTCTATCTAGTGCATTGTGTTGCTGCCAG CAACAATGTGAACCAATCTCTCCCTCTCTCTGGTTCTTCCGTTTCTTGCC GTTGGTTGGCAGAGCATGCGAGGGAAGAAAGTGGTGGTGGAACTGAAGAA TGATACCGAGATCTCCGGGATACTGGAGGAGACAGATCGAAGCATGAAGT GAGCCTGCTGTGCATCAAAAACGGGTCGAAAATTCCGCGAAAATTCCGTA TGTATGTATGTACGCGCACATGAACGCCGACCTCACCGTCGAAGAGGGAA AGGGACGGCCGAACCCTTCTCGCGACAAAAATCTTAGGCAAGCACGGCAG ACGGGAGGAGTGGGGGCCTTGGGGAAAGGAACTCTTCTGTGTGACCACGG TTCAGTACTCTGGCAAGATGTCCTCGTGACACAGGGAGCCCATCGAGCAC TGGAAAGAAATGTGAAGAAGAAAATAAAGAAAAAACGCCAACGGGAATCC TGGTAGCTTGACTCTCACATAGGGCATTCCACCGTGCGTCCGAGGGGAGT GTTTCCAATCGCCGTGTTGAATTTGACGAGGGTACACCTTTTCGGGACAC ATATAACCTCACGGGACACAAACGCCCGATGATTTCGCGGAATATACGGG TCAACCGTACCACAAAATTGTGCCTGCTGGTTTTGGGATTGTTTCGACTG GACCGCGGCCCGGGGGCCCTTTGGGATTTTTTTAGCTACATCGCGTCGCC CGCTAGATACACATGTGCGGCTTTGGCATATATAAACGGCGACGTTGCTC ACCCCACCCCTTGTCTCTTGCGCCTCCCCCCGTCCTCTTCCTGATGGCGC CTCGATGCCCTCCACTCTCATGGAATGCTCGGCCCGAAGCTTATCCATGG TGGACGTACGACAAACCAACCCGGATGTAAGCAAGCTTGTATGCTTCACG TTAGAACGTGCGAGCGACCCCCAAAACCCGAACACCGCGTATTTTGACAT TATCGTAGGTAGGACACGGGTAGTCTTGACATCGGCGGAGCTGCCCTACT GGCGAGCACCGCAGTGCGCAACGCGGCCTTTTCCTGCGGCATTAAAACGA ATGCAGTCAGCGGCGCGAGAAAGATATTCCAAAGGCTTTCAAACGCCGTC TACTAGAACACCACGTCTGACAGGTGTTGCTAACATCAGTTGTTCTTGCA TATGAACACCGACTGCGGCGTTCGCTGTGCGGTTTCGCCTTAAATGTCGT GCTCTTTGCCAGGGCTCCGTGAAGAAGATGAACGTCGTTCTGGTCCAGGG TAGGATGATCCGATACGTGCACATTCCGGACGAAGTCGACGCCATCAGAA ACCTGCAGGACCACGTGAGTACAGCATATTCCACCGCGTGCGCAGCAGCG GCTCACAGTCTGGGCGATGGTTCCGGATGACCGCACGATGATTGCCGAGC TGCGTGTTGCACCGTGTTGCTTGGGTCCCACACACGTGCGCTCTGCCTTT CACCAGCGTCATTTCCTGCCCCATTTCGCCAAGAACTTCGTGTCCGCATG CGAGCAGCAAGGTCTTGGGAGGGGAATTGGATAGAAAGTAGCTGGCTCTC TCTGGCCCAAGGCGCAAGGGTGGTGAGATCTTACCCTGGCCCGCTTCCTC CTGCCCCCCCCCCAACGCCGAACGCAGATGCGCACAATGGACCAACAGGG ATACCGTCGGCAAATGCTGAAGCCGAAGCCGTCCCGGGCGCCCCCATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9349:3534..6032-

>mRNA_L-elsbetiae_contig9349.18347.1 ID=mRNA_L-elsbetiae_contig9349.18347.1|Name=mRNA_L-elsbetiae_contig9349.18347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig9349:3534..6032- (Laminarionema elsbetiae ELsaHSoW15)
CGATCTGGCGGTCGGCCGCGAACTACCAAAAAAAAGACACAGCCACTGGA
GCGGACTCTGGCTATTTTGATACAACGATCTGGCGGTCGGCCGCGAACTA
CCAAAAAAAAGACACAGCCACTGGAGCGGACTCTGGCTATTTTGATACAA
AGCATGCGAGGGAAGAAAGTGGTGGTGGAACTGAAGAATGATACCGAGAT
CTCCGGGATACTGGAGGAGACAGATCGAAGCATGAAAGCATGCGAGGGAA
GAAAGTGGTGGTGGAACTGAAGAATGATACCGAGATCTCCGGGATACTGG
AGGAGACAGATCGAAGCATGAAGGACGGCCGAACCCTTCTCGCGACAAAA
ATCTTAGGCAAGCACGGCAGACGGGAGGAGGACGGCCGAACCCTTCTCGC
GACAAAAATCTTAGGCAAGCACGGCAGACGGGAGGACTTATCCATGGTGG
ACGTACGACAAACCAACCCGGATCTTATCCATGGTGGACGTACGACAAAC
CAACCCGGATGGCTCCGTGAAGAAGATGAACGTCGTTCTGGTCCAGGGTA
GGATGATCCGATACGTGCACATTCCGGACGAAGTCGACGCCATCAGAAAC
CTGCAGGACCACGGCTCCGTGAAGAAGATGAACGTCGTTCTGGTCCAGGG
TAGGATGATCCGATACGTGCACATTCCGGACGAAGTCGACGCCATCAGAA
ACCTGCAGGACCACATGCGCACAATGGACCAACAGGGATACCGTCGGCAA
ATGCTGAAGCCGAAGCCGTCCCGGGCGCCCCCATGAATGCGCACAATGGA
CCAACAGGGATACCGTCGGCAAATGCTGAAGCCGAAGCCGTCCCGGGCGC
CCCCATGA
back to top