prot_L-elsbetiae_contig9.18003.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9.18003.1
Unique Nameprot_L-elsbetiae_contig9.18003.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length195
Homology
BLAST of mRNA_L-elsbetiae_contig9.18003.1 vs. uniprot
Match: A0A6H5JP29_9PHAE (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP29_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.490e-15
Identity = 64/165 (38.79%), Postives = 79/165 (47.88%), Query Frame = 0
Query:    5 KGNREDCEDFGPQRNLELCEVRGVVRVEAYLPSSSETLXXXXXXXXXXXXXXXGV---EGSAAAETTRKDSAEDALVLPLRIKXXXXXXXXXSAAAPARPDRRGTADAGEGRGCERVLPTVADAGHEEECRSRKQQRRLLWEARATERRRGAAEMLAAVQGAISD 166
            + +R+DC   G ++N  LCEVR V+RVEAYLP SS TL                    +G+  AE    D   D  +LPLRIK          A   A  + +           ER     ADA H+EECR RK++RR   +AR  E RR  AEM A VQGAI D
Sbjct: 2135 QADRDDC---GRRKNEGLCEVRSVIRVEAYLPDSSTTLTLRVKVPPSSSTSSKTTAESDGTVPAEVHNNDGGADQPMLPLRIKVVTSSCIKGGAPVAADTECK-----------ERRQSLCADAEHKEECRLRKKRRRAYRDARNAEARRVDAEMFAVVQGAIED 2285          
BLAST of mRNA_L-elsbetiae_contig9.18003.1 vs. uniprot
Match: D8LLD6_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD6_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.500e-10
Identity = 57/164 (34.76%), Postives = 72/164 (43.90%), Query Frame = 0
Query:    6 GNREDCEDFGPQRNLELCEVRGVVRVEAYLPSSSETLXXXXXXXXXXXXXXXGV---EGSAAAETTRKDSAEDALVLPLRIKXXXXXXXXXSAAAPARPDRRGTADAGEGRGCERVLPTVADAGHEEECRSRKQQRRLLWEARATERRRGAAEMLAAVQGAISD 166
            G+ +D  D G       CEVR V+RVEAYLP SS T+                    +G+   E  + +  ED   LPLRI           A   A  + +           ER      DA H++ECR RK++RR   +AR  E RRG AEM A VQ AI D
Sbjct: 2621 GHEQDDRDAG------RCEVRTVIRVEAYLPDSSTTVALHVKVPPSPSTSPKTTVEGDGTLPTEVHKNEGGEDQATLPLRINVATSSCIKGGAPVAADTECK-----------ERRESLYVDAEHKQECRLRKKRRRACRDARYAEARRGDAEMFAVVQEAIGD 2767          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9.18003.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP29_9PHAE2.490e-1538.79AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
D8LLD6_ECTSI1.500e-1034.76AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9contigL-elsbetiae_contig9:55659..56243 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9.18003.1mRNA_L-elsbetiae_contig9.18003.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9 55659..56244 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9.18003.1 ID=prot_L-elsbetiae_contig9.18003.1|Name=mRNA_L-elsbetiae_contig9.18003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
LPSGKGNREDCEDFGPQRNLELCEVRGVVRVEAYLPSSSETLTLRVRVPA
AASASGRGVEGSAAAETTRKDSAEDALVLPLRIKISTTTRGKGSAAAPAR
PDRRGTADAGEGRGCERVLPTVADAGHEEECRSRKQQRRLLWEARATERR
RGAAEMLAAVQGAISDSHVSLLARKSAGTATQQHGQGLDKHANGG
back to top