prot_L-elsbetiae_contig8827.17851.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8827.17851.1
Unique Nameprot_L-elsbetiae_contig8827.17851.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length143
Homology
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BLAST of mRNA_L-elsbetiae_contig8827.17851.1 vs. uniprot
Match: A0A836CK59_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK59_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.360e-25
Identity = 61/136 (44.85%), Postives = 81/136 (59.56%), Query Frame = 0 
Query:    1 GQKLPKHRFDHFLRTRLGIATGNPFWRVSQDGIHRLLQASPAALHDTLCEVSGTKAINAHRSAALKQLARWRRSLADIQSNLATLEEAVGREGAHLLAMDRVRELTAELDTMPGEMEALDRQIATAEHSAAERLLD 136
            GQK+P+ RFD  L   LG++   PFW + Q+G+  +L A    LHD LCEV+GTK INA R+A LKQL  WR SL  I + L   E AV  E   L  ++R+ EL  +L   P +++ LD Q+  AE +AA   LD
Sbjct:  140 GQKVPRKRFDGALLA-LGLSVDAPFWHIRQNGMQSILAAPAETLHDHLCEVAGTKGINAQRAAVLKQLESWRASLLAITATLGKAEAAVDAEAGQLHILERLDELQEQLAAFPWQLKKLDAQLRAAEAAAAAEELD 274
[Close]
BLAST of mRNA_L-elsbetiae_contig8827.17851.1 vs. uniprot
Match: D7FQD0_ECTSI (Smc4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD0_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 8.170e-17
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0 
Query:    1 GQKLPKHRFDHFLRTRLGIATGNPFWRVSQDGIHRL 36
            GQ+LPKHRFDHFLRTRLGIATGNPFWRVSQDGIHRL
Sbjct:  138 GQRLPKHRFDHFLRTRLGIATGNPFWRVSQDGIHRL 173
[Close]
BLAST of mRNA_L-elsbetiae_contig8827.17851.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 9.320e-10
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 0 
Query:   99 MDRVRELTAELDTMPGEMEALDRQIATAEHSAAERLLDRLGSDVE 143
            MDRVRELT EL+ +PG+MEALDR+IA AEH+A ERL+ RLG DVE
Sbjct:    1 MDRVRELTTELEAIPGKMEALDREIARAEHAATERLVVRLGFDVE 45
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8827.17851.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CK59_9STRA2.360e-2544.85P-loop containing nucleoside triphosphate hydrolas... [more]
D7FQD0_ECTSI8.170e-1797.22Smc4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
D7FQC9_ECTSI9.320e-1073.33SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 128..143
NoneNo IPR availableCOILSCoilCoilcoord: 68..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8827contigL-elsbetiae_contig8827:3792..7856 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8827.17851.1mRNA_L-elsbetiae_contig8827.17851.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8827 3792..7857 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8827.17851.1 ID=prot_L-elsbetiae_contig8827.17851.1|Name=mRNA_L-elsbetiae_contig8827.17851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
GQKLPKHRFDHFLRTRLGIATGNPFWRVSQDGIHRLLQASPAALHDTLCE
VSGTKAINAHRSAALKQLARWRRSLADIQSNLATLEEAVGREGAHLLAMD
RVRELTAELDTMPGEMEALDRQIATAEHSAAERLLDRLGSDVE
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