mRNA_L-elsbetiae_contig8827.17851.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8827.17851.1
Unique NamemRNA_L-elsbetiae_contig8827.17851.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8827.17851.1 vs. uniprot
Match: A0A836CK59_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK59_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.360e-25
Identity = 61/136 (44.85%), Postives = 81/136 (59.56%), Query Frame = 1 
Query:    1 GQKLPKHRFDHFLRTRLGIATGNPFWRVSQDGIHRLLQASPAALHDTLCEVSGTKAINAHRSAALKQLARWRRSLADIQSNLATLEEAVGREGAHLLAMDRVRELTAELDTMPGEMEALDRQIATAEHSAAERLLD 408
            GQK+P+ RFD  L   LG++   PFW + Q+G+  +L A    LHD LCEV+GTK INA R+A LKQL  WR SL  I + L   E AV  E   L  ++R+ EL  +L   P +++ LD Q+  AE +AA   LD
Sbjct:  140 GQKVPRKRFDGALLA-LGLSVDAPFWHIRQNGMQSILAAPAETLHDHLCEVAGTKGINAQRAAVLKQLESWRASLLAITATLGKAEAAVDAEAGQLHILERLDELQEQLAAFPWQLKKLDAQLRAAEAAAAAEELD 274
[Close]
BLAST of mRNA_L-elsbetiae_contig8827.17851.1 vs. uniprot
Match: D7FQD0_ECTSI (Smc4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD0_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 8.170e-17
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 GQKLPKHRFDHFLRTRLGIATGNPFWRVSQDGIHRL 108
            GQ+LPKHRFDHFLRTRLGIATGNPFWRVSQDGIHRL
Sbjct:  138 GQRLPKHRFDHFLRTRLGIATGNPFWRVSQDGIHRL 173
[Close]
BLAST of mRNA_L-elsbetiae_contig8827.17851.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 9.320e-10
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:  295 MDRVRELTAELDTMPGEMEALDRQIATAEHSAAERLLDRLGSDVE 429
            MDRVRELT EL+ +PG+MEALDR+IA AEH+A ERL+ RLG DVE
Sbjct:    1 MDRVRELTTELEAIPGKMEALDREIARAEHAATERLVVRLGFDVE 45
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8827.17851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CK59_9STRA2.360e-2544.85P-loop containing nucleoside triphosphate hydrolas... [more]
D7FQD0_ECTSI8.170e-1797.22Smc4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
D7FQC9_ECTSI9.320e-1073.33SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8827contigL-elsbetiae_contig8827:3792..7857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue6.2e-09
Seed eggNOG ortholog2880.D7FQC9
KEGG koko:K06674
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008150,GO:0008152,GO:0008278,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0030892,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1903047,GO:1990837
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0933@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Ec32 ortholog descriptionRecF/RecN/SMC, N-terminal
Ec32 orthologEc-01_006580.1
Exons5
Model size431
Cds size429
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8827.17851.1prot_L-elsbetiae_contig8827.17851.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8827 3792..7856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816960.5659983-CDS-L-elsbetiae_contig8827:3791..38141622816960.5659983-CDS-L-elsbetiae_contig8827:3791..3814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8827 3792..3814 +
1691683943.067795-CDS-L-elsbetiae_contig8827:3791..38141691683943.067795-CDS-L-elsbetiae_contig8827:3791..3814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8827 3792..3814 +
1622816960.5769188-CDS-L-elsbetiae_contig8827:4479..45641622816960.5769188-CDS-L-elsbetiae_contig8827:4479..4564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8827 4480..4564 +
1691683943.0812407-CDS-L-elsbetiae_contig8827:4479..45641691683943.0812407-CDS-L-elsbetiae_contig8827:4479..4564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8827 4480..4564 +
1622816960.5864198-CDS-L-elsbetiae_contig8827:4822..49631622816960.5864198-CDS-L-elsbetiae_contig8827:4822..4963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8827 4823..4963 +
1691683943.0938287-CDS-L-elsbetiae_contig8827:4822..49631691683943.0938287-CDS-L-elsbetiae_contig8827:4822..4963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8827 4823..4963 +
1622816960.5962117-CDS-L-elsbetiae_contig8827:6058..61211622816960.5962117-CDS-L-elsbetiae_contig8827:6058..6121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8827 6059..6121 +
1691683943.1063957-CDS-L-elsbetiae_contig8827:6058..61211691683943.1063957-CDS-L-elsbetiae_contig8827:6058..6121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8827 6059..6121 +
1622816960.6090477-CDS-L-elsbetiae_contig8827:7739..78561622816960.6090477-CDS-L-elsbetiae_contig8827:7739..7856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8827 7740..7856 +
1691683943.1168056-CDS-L-elsbetiae_contig8827:7739..78561691683943.1168056-CDS-L-elsbetiae_contig8827:7739..7856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8827 7740..7856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8827.17851.1

>prot_L-elsbetiae_contig8827.17851.1 ID=prot_L-elsbetiae_contig8827.17851.1|Name=mRNA_L-elsbetiae_contig8827.17851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
GQKLPKHRFDHFLRTRLGIATGNPFWRVSQDGIHRLLQASPAALHDTLCE
VSGTKAINAHRSAALKQLARWRRSLADIQSNLATLEEAVGREGAHLLAMD
RVRELTAELDTMPGEMEALDRQIATAEHSAAERLLDRLGSDVE
back to top

mRNA from alignment at L-elsbetiae_contig8827:3792..7857+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8827.17851.1 ID=mRNA_L-elsbetiae_contig8827.17851.1|Name=mRNA_L-elsbetiae_contig8827.17851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4066bp|location=Sequence derived from alignment at L-elsbetiae_contig8827:3792..7857+ (Laminarionema elsbetiae ELsaHSoW15)
GGACAGAAGCTCCCGAAGCACAGGCAAGAAGAAAGAAATACAAAAATAAA
AAAATAAGACGACGAAAAGAAACAAAACATACCACCACGGTTACTGCGCA
GCCCCAAAAATGGTGCGTTGCCTCTAAATTTGCTCGGACACCCCCGTCCG
AGTGCTGGTAAACGTAAGGAAAAAAAAAAAAAAAAAAAAGAGTCCACGAA
CTGGGGTTTCGAGGAGAGAAGGAAGAGGGGACTGGGCACCGACTGAGGAT
GTATCNNNNNNNNNNATAATGGAGGACCACCAAAAAAGACACGTTGCCAC
AAAATTAACACAAAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAGTCCACGAACTGGGATTTAGAGGAGTGTAGGTCG
TGGGTCATGGGGGCGGTTGATGTGTTTTCGAGACGACTCTTGATGGTTTT
TCCGTCCGCTGAGGAGAGAAGAAGCAACCGAGAACGATCAGTCAGGTCGT
CTTTCGTGTAATATGCACCCGTTCGTGATCAGATTTCTAGACGCTGCTGT
AATTCTACATATACATAGTTCGAAATGTCTTTTTATCTAAATTTGCCCCC
ACATCCAATCGCGGTTCTCTCCTTTTTTTATTTTTGCCCCCCCGCCCCCG
ACGCAACACGCCTCCTGCCTGCCTCTCGCCCGCTGCAGGTTCGACCACTT
TCTGCGGACCCGCCTCGGCATCGCGACGGGCAACCCGTTCTGGAGGGTCA
GCCAGGACGGAATCCACCGCCTGGTGCGTGTGCGTGTGCGTGTGCGTGTG
CGTGTGCGTGCGCGTGCGCGTGTGCGTGTACGTGTGCCGCTGCCCGTTTT
ACTCCGCGTACGGTCGCCACCACCGTCGCGGTTGTCAACACCACCGCTTG
CGACCTGCTCAGATCGGGTGTCAGTCGTCGTGATCATGTCGCCGCCGCCG
CCGCCACCGCCGCCGCCACCACTACGACCGCCGCCCTCAAAACCGTCCGG
CCTGCCGCTCGTCTCTGCGGTTTGAAAGCAGCTGCAGGCCTCGCCGGCCG
CGCTCCACGACACGCTCTGCGAGGTGTCGGGCACGAAGGCCATCAACGCG
CACCGCTCCGCCGCGCTCAAGCAGCTGGCCCGGTGGAGGAGGTCGCTCGC
CGACATCCAGAGCAACCTTGCCGTGAGTGAGAAAAGCCGGTCAACCGGTC
AGCTGGTTGGCCAAACCCCCGGAATGGGCAAAACTGCCACGGCCCGGTGC
TGGTTGTCTACCTATGTGTCGACGAAATACATACGTCGCAGATCGTTCGG
CGAGACGCTAAGCTGTGCACCGAGCATGTTTTAGTGCGGCGCGGTGGTTT
TGTTTGAGAATCGGCTTTGTCTACCGTTGCCCCTCCCCCCCCCTCCCCCC
CCCCCCAGTGGCTTCCTTTTGAAGCGGCTGAGGGGGGGGGTATGCTTTGA
TGCGGACGCACGAAACGCAAACCTCCGCAAGCCTTTCAGAACGTGGGTCG
GGTGAGTCAGCTCAGGTGGACAGTTTAAGGCACGAAAGCGTTCTCTTCGC
TGTGACCTTCCTTTTGTGCTCGTGCTCCCCATGAATGACTGTTGTGGGTA
CAGACTGGCGGATTGCGTCTCCCTCCGCCCTGCTCGCGCACTTTTGACAG
TCCCGCGCACACACGTCACACAGAACCACGCCCAAAGGGTCAAAATAGTA
ATATCCCTAGAACTCGCTCTGTCGACAAAGCGGTGAGGTCTCCCTCGGCC
CTGTTCCCTTGGTTCGCGGTATTGGTGGGTTGATGTCGCTGTCTCCTGCG
GCATGCAAGCGCCATCTTTTCGAATCCATTGTGTCCCGGGGATCGATGGG
GCGTCGCCTTCAACCGCGGGCGCGGAATGGTGCGCCAGGAGACGGAAAGG
AAACCGTCGAGTGCGAGTTGTGTGCGTGTGTTGTGTGTGTTGTGTTGTCT
TCATATTAGAAACCGTTCCGATCCCTCTATCCAGTACACCTCCATGAGTC
CATACTGATCCAACACTGACGCGGTCGATTCACGTGGTCACAGAATAACT
TACCCCACAAAAAAAGGGTGTAGATTACTGAAAAATGAATTGCGCCTGCG
GAATATGCTGCTGCTGCTGCTGCCCCCAGAGGGCGGTCGTAGTCTTGCCC
TTGGCATCGAACCAGACGCCGAGAGGCAAATAACTGGAGGCGAACGCACC
GACCGTTCTTTTGCCTCACCATTCGCTGAGTGGACCAACTTGCCGTGACC
TCTGGCACACACAACAGACTCTCGAGGAGGCGGTGGGCAGGGAGGGTGCG
CATCTGCTGGCGATGGACAGGGTGCGGGAGGTGAGAGACGGGCAGCAAAG
ACAAGCGCAGACAAGGAAGGAAGTTTGACTGACTTTTGACGGAACCCCCC
TCACACCCACCCCCCCCCCCCCTGAATTTCCTTCGATGTTTGGGCTCTTC
GGCGTTTAAGTTCCTAATGGTTTGGCTTTTCTAAAAAGGACTTGCATATT
TCACCGAAGAAGGAGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCGCACCGGCGGGGAGGGGGAGCACCCGCCACGGGGG
CGACCAGCCGGCGCGCCCGCCCCCTCTGCGGGAGGACGAAACANNNNNNN
NNNAAGGGATTGGCTTTTCAAAAAAGGACTTGCATATTCCACCGAAGAAG
GGGCCCCCCCCCCCGCCCCCCGCCCCCCCCCCCGCGCCTTATTGCAGTGC
GGAAGGGAAGGAAGAGATCCATCGCAGAATGGGGCTCCAGTGACGTCGCC
CCCACCGCTGGTCGGAAGAAAGCGAAAACTACACCCACCCGTAGTCTCGA
ATCCGAGAACTTTTGGCACGCATGCTGGACGTGCCTTGCTTAACTCTCCG
CCCCCAAGTCAACACTATTTGGTGCCGCTGTTCTCCCTTATGTACACACC
CTGTCCGCAAAAGTTCCTTGGTGAATATCGATTCGAAAAAAATATGTATA
TAACCGTATGTAGCATATTCTCAGGGAAAGGAACCCTCATGTGTGACCAC
GGCTCAGTACTCTGGCAAGATGCCCTCGTGGCAAGGAGCCCATCGAGCAC
TGGAAACAAATGTGTGACGAAGAAAAACAAAGTAGTTAAGTCTACGTATT
TTCATGTATCCTGCCCGCGTAAGTATCTTCGCAAATATTTAGCTGGCTGC
AGTTCCTCTCGCAGCTGTTGGCGTCAAGTCGTGTCAAAAACAGCCTATCA
TTTCAGAACCCCCGGGGTGATTAGCTCGCTGCAGACCTATCTATGTAACC
GGTTTGGGTTTTATAGCGGTACAACAGTGATACCTTCCGTCTGCCTCCTG
ACAAAAAAAAGAAGTTACTTCTCTTGATTTTGGTACAATATGATTTTTGG
CGTTGTTAGAGATAAAAACAGCAATTGTGTGTCCCGCGGGCAAACGCAAC
CGCGACGCTCTACAGGCGTACCCACTCTTCAGTACTTTATGACGAAGAGT
TCGGCGCGGTTTGCGTATGCGACGTGTCGATCAGATGGTGGTTCCTTTGG
CAGGGCGTTTATGTTTTTCTGCGCGTGCCTGCCTCACTGGGGATGGCCTT
TGTAGACGTGGGGCTTCGATTGCCCTTCCCATCCTTATTCCTATTTCTTG
GACCTTGGGGCCGTGGGCGTTTGGAGCATCTCGTTTTAGCAAGAGTATTT
GTCGACCGACCTTCTTTTGTAACACGGTAGATTATCCAGTTTTTTTTTTG
CATTCCCTTCACCTCGCCTTTTTGCACCAAAAAAAAACTTTCATTGTCTG
CATCTACCCCCCGAAGGATGCCCAATTCACGGGGGTGACACAGATGTACA
TGTGTACGGTATGTTATTTCGTCCATGTGCTTCTGTGTTTCGTTTTGTGC
GCGTGTGTGCGCATATATGCTGGATGTTGGCGTGCTTGTCAACAAAAGCT
GACCGCGGAGTTGGACACAATGCCCGGGGAGATGGAAGCCCTGGATCGAC
AAATCGCCACGGCGGAGCACTCGGCAGCGGAGAGGCTCCTAGACCGGCTC
GGATCTGATGTTGAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8827:3792..7857+

>mRNA_L-elsbetiae_contig8827.17851.1 ID=mRNA_L-elsbetiae_contig8827.17851.1|Name=mRNA_L-elsbetiae_contig8827.17851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig8827:3792..7857+ (Laminarionema elsbetiae ELsaHSoW15)
GGACAGAAGCTCCCGAAGCACAGGGACAGAAGCTCCCGAAGCACAGGTTC
GACCACTTTCTGCGGACCCGCCTCGGCATCGCGACGGGCAACCCGTTCTG
GAGGGTCAGCCAGGACGGAATCCACCGCCTGGTTCGACCACTTTCTGCGG
ACCCGCCTCGGCATCGCGACGGGCAACCCGTTCTGGAGGGTCAGCCAGGA
CGGAATCCACCGCCTGCTGCAGGCCTCGCCGGCCGCGCTCCACGACACGC
TCTGCGAGGTGTCGGGCACGAAGGCCATCAACGCGCACCGCTCCGCCGCG
CTCAAGCAGCTGGCCCGGTGGAGGAGGTCGCTCGCCGACATCCAGAGCAA
CCTTGCCCTGCAGGCCTCGCCGGCCGCGCTCCACGACACGCTCTGCGAGG
TGTCGGGCACGAAGGCCATCAACGCGCACCGCTCCGCCGCGCTCAAGCAG
CTGGCCCGGTGGAGGAGGTCGCTCGCCGACATCCAGAGCAACCTTGCCAC
TCTCGAGGAGGCGGTGGGCAGGGAGGGTGCGCATCTGCTGGCGATGGACA
GGGTGCGGGAGACTCTCGAGGAGGCGGTGGGCAGGGAGGGTGCGCATCTG
CTGGCGATGGACAGGGTGCGGGAGCTGACCGCGGAGTTGGACACAATGCC
CGGGGAGATGGAAGCCCTGGATCGACAAATCGCCACGGCGGAGCACTCGG
CAGCGGAGAGGCTCCTAGACCGGCTCGGATCTGATGTTGAGCTGACCGCG
GAGTTGGACACAATGCCCGGGGAGATGGAAGCCCTGGATCGACAAATCGC
CACGGCGGAGCACTCGGCAGCGGAGAGGCTCCTAGACCGGCTCGGATCTG
ATGTTGAG
back to top