prot_L-elsbetiae_contig88.17830.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig88.17830.1
Unique Nameprot_L-elsbetiae_contig88.17830.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length108
Homology
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A6H5J6Y2_9PHAE (60S ribosomal export protein NMD3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Y2_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 4.050e-56
Identity = 81/92 (88.04%), Postives = 86/92 (93.48%), Query Frame = 0
Query:   17 MANILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 108
            +A ILCCLCGR IQPNGANMCG CL++QVDVTE IPKKGL +IQCRRCLKWLTKN+HWS FELESAPFLALVLKKIPGLAKQDLVDAKWIWT
Sbjct:   61 LATILCCLCGRPIQPNGANMCGACLQDQVDVTEGIPKKGLTIIQCRRCLKWLTKNDHWSGFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 152          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: D7G1R1_ECTSI (60S ribosomal export protein NMD3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R1_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.290e-52
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 0
Query:   17 MANILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 108
            +A ILCCLCGR IQPNGANMCG CLR+QVDVTE IPKKGL +IQCRRCLKWLTKN+HWS FELESAPFLALVLKKIPGLAKQDLVDAKWIWT
Sbjct:   60 LATILCCLCGRPIQPNGANMCGACLRDQVDVTEGIPKKGLTIIQCRRCLKWLTKNDHWSGFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 151          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A836CPD6_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPD6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.550e-32
Identity = 55/89 (61.80%), Postives = 71/89 (79.78%), Query Frame = 0
Query:   20 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 108
            ILCCLCG+SIQPN A +CG CLR +VD+TE+I +KGL V QCR+CL+W  KN+H+   +LES   LAL LK+IPGL+K D+VDA ++WT
Sbjct:    9 ILCCLCGKSIQPNSAALCGECLRAEVDITENIQEKGLKVYQCRKCLRWQGKNDHYVPCQLESLELLALCLKRIPGLSKADIVDAAFVWT 97          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A0L0FQG9_9EUKA (60S ribosomal export protein NMD3 n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FQG9_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 4.810e-24
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 0
Query:   20 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 108
            ILCC+CG SI PN ANMC PC+R +VD+TE IPK+ + +  CR C ++L   EHW A +LES   LAL LK++ GL K  L+DA +IWT
Sbjct:   16 ILCCICGTSIAPNDANMCVPCIRSRVDITEGIPKQ-MTIYFCRGCDRYLQPPEHWIACDLESRELLALCLKRLKGLNKVRLIDAGFIWT 103          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A7R9H8I5_TIMPO (60S ribosomal export protein NMD3 n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9H8I5_TIMPO)

HSP 1 Score: 97.8 bits (242), Expect = 6.450e-22
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 0
Query:   16 QMANILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 108
            + A ILCC CG +I+PN ANMC PCLR QVD+TE IPK+ ++   C+ C ++L     W +  LES   L+L LKK+ GL++  LVDA ++WT
Sbjct:   13 EKAKILCCECGTAIEPNPANMCVPCLRTQVDITEGIPKQAVLHF-CKGCERYLQPPAEWVSCSLESRELLSLCLKKLKGLSRVKLVDAGFVWT 104          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A6J8ALK0_MYTCO (60S ribosomal export protein NMD3 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8ALK0_MYTCO)

HSP 1 Score: 98.2 bits (243), Expect = 1.010e-21
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 0
Query:   20 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 108
            ILCC CG  I+PN +NMC  CLR QVD+TE IPK+G++   CR C ++L    HW A +LES   L++ LKK+ GL    L+DA ++WT
Sbjct:   15 ILCCQCGTQIEPNPSNMCVACLRTQVDITEGIPKQGVLYF-CRNCERYLQPPNHWVAAQLESRELLSVCLKKLGGLKTVRLIDAGFVWT 102          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A8B6GB91_MYTGA (60S ribosomal export protein NMD3 n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GB91_MYTGA)

HSP 1 Score: 93.6 bits (231), Expect = 1.500e-21
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 0
Query:   20 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPG-LAKQDLVDAKWIWT 108
            ILCC CG  I+PN +NMC  CLR QVD+TE IPK+G++   CR C ++L    HW A +LES   L++ LKK+ G L    L+DA ++WT
Sbjct:   15 ILCCQCGTQIEPNPSNMCVACLRTQVDITEGIPKQGVLYF-CRNCERYLQPPNHWVAAQLESRELLSVCLKKLGGGLKTVRLIDAGFVWT 103          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A8B6GBI4_MYTGA (60S ribosomal export protein NMD3 (Fragment) n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GBI4_MYTGA)

HSP 1 Score: 93.6 bits (231), Expect = 1.640e-21
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 0
Query:   20 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPG-LAKQDLVDAKWIWT 108
            ILCC CG  I+PN +NMC  CLR QVD+TE IPK+G++   CR C ++L    HW A +LES   L++ LKK+ G L    L+DA ++WT
Sbjct:   15 ILCCQCGTQIEPNPSNMCVACLRTQVDITEGIPKQGVLYF-CRNCERYLQPPNHWVAAQLESRELLSVCLKKLGGGLKTVRLIDAGFVWT 103          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A7R9G5D1_TIMSH (60S ribosomal export protein NMD3 (Fragment) n=1 Tax=Timema shepardi TaxID=629360 RepID=A0A7R9G5D1_TIMSH)

HSP 1 Score: 96.3 bits (238), Expect = 2.080e-21
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 0
Query:   20 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 108
            ILCC CG +I+PN ANMC PCLR QVD+TE IPK+ ++   C+ C ++L     W +  LES   L+L LKK+ GL++  LVDA ++WT
Sbjct:    2 ILCCECGTAIEPNPANMCVPCLRTQVDITEGIPKQAVLHF-CKGCERYLQPPAEWVSCSLESRELLSLCLKKLKGLSRVKLVDAGFVWT 89          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A7R9IBT2_9NEOP (60S ribosomal export protein NMD3 n=6 Tax=Timema TaxID=61471 RepID=A0A7R9IBT2_9NEOP)

HSP 1 Score: 96.7 bits (239), Expect = 3.700e-21
Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 0
Query:   16 QMANILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 108
            + A ILCC CG +I+PN ANMC PCLR QVD+TE IPK+ ++   C+ C ++L     W +  LES   L+L LKK+ GL +  LVDA ++WT
Sbjct:   13 EKAKILCCECGTAIEPNPANMCVPCLRTQVDITEGIPKQAVLHF-CKGCERYLQPPAEWVSCSLESRELLSLCLKKLKGLNRVKLVDAGFVWT 104          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6Y2_9PHAE4.050e-5688.0460S ribosomal export protein NMD3 n=1 Tax=Ectocarp... [more]
D7G1R1_ECTSI1.290e-5289.1360S ribosomal export protein NMD3 n=1 Tax=Ectocarp... [more]
A0A836CPD6_9STRA3.550e-3261.8060S ribosomal export protein NMD3 n=1 Tax=Tribonem... [more]
A0A0L0FQG9_9EUKA4.810e-2455.0660S ribosomal export protein NMD3 n=1 Tax=Sphaerof... [more]
A0A7R9H8I5_TIMPO6.450e-2249.4660S ribosomal export protein NMD3 n=1 Tax=Timema p... [more]
A0A6J8ALK0_MYTCO1.010e-2150.5660S ribosomal export protein NMD3 n=1 Tax=Mytilus ... [more]
A0A8B6GB91_MYTGA1.500e-2150.0060S ribosomal export protein NMD3 n=3 Tax=Mytilus ... [more]
A0A8B6GBI4_MYTGA1.640e-2150.0060S ribosomal export protein NMD3 (Fragment) n=2 T... [more]
A0A7R9G5D1_TIMSH2.080e-2150.5660S ribosomal export protein NMD3 (Fragment) n=1 T... [more]
A0A7R9IBT2_9NEOP3.700e-2149.4660S ribosomal export protein NMD3 n=6 Tax=Timema T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007064Nmd3, N-terminalPFAMPF04981NMD3coord: 22..108
e-value: 6.9E-17
score: 61.7
NoneNo IPR availablePANTHERPTHR12746:SF260S RIBOSOMAL EXPORT PROTEIN NMD3coord: 13..108
IPR039768Ribosomal export protein Nmd3PANTHERPTHR12746NONSENSE-MEDIATED MRNA DECAY PROTEIN 3coord: 13..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig88contigL-elsbetiae_contig88:54744..61184 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig88.17830.1mRNA_L-elsbetiae_contig88.17830.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig88 54744..61184 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig88.17830.1 ID=prot_L-elsbetiae_contig88.17830.1|Name=mRNA_L-elsbetiae_contig88.17830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
PLPTAAGGAGAAGKKQMANILCCLCGRSIQPNGANMCGPCLREQVDVTED
IPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDL
VDAKWIWT
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007064Nmd3_N
IPR039768Nmd3