mRNA_L-elsbetiae_contig88.17830.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig88.17830.1
Unique NamemRNA_L-elsbetiae_contig88.17830.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A6H5J6Y2_9PHAE (60S ribosomal export protein NMD3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Y2_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 4.050e-56
Identity = 81/92 (88.04%), Postives = 86/92 (93.48%), Query Frame = 1
Query:   49 MANILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324
            +A ILCCLCGR IQPNGANMCG CL++QVDVTE IPKKGL +IQCRRCLKWLTKN+HWS FELESAPFLALVLKKIPGLAKQDLVDAKWIWT
Sbjct:   61 LATILCCLCGRPIQPNGANMCGACLQDQVDVTEGIPKKGLTIIQCRRCLKWLTKNDHWSGFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 152          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: D7G1R1_ECTSI (60S ribosomal export protein NMD3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R1_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.290e-52
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1
Query:   49 MANILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324
            +A ILCCLCGR IQPNGANMCG CLR+QVDVTE IPKKGL +IQCRRCLKWLTKN+HWS FELESAPFLALVLKKIPGLAKQDLVDAKWIWT
Sbjct:   60 LATILCCLCGRPIQPNGANMCGACLRDQVDVTEGIPKKGLTIIQCRRCLKWLTKNDHWSGFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 151          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A836CPD6_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPD6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.550e-32
Identity = 55/89 (61.80%), Postives = 71/89 (79.78%), Query Frame = 1
Query:   58 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324
            ILCCLCG+SIQPN A +CG CLR +VD+TE+I +KGL V QCR+CL+W  KN+H+   +LES   LAL LK+IPGL+K D+VDA ++WT
Sbjct:    9 ILCCLCGKSIQPNSAALCGECLRAEVDITENIQEKGLKVYQCRKCLRWQGKNDHYVPCQLESLELLALCLKRIPGLSKADIVDAAFVWT 97          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A0L0FQG9_9EUKA (60S ribosomal export protein NMD3 n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FQG9_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 4.810e-24
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   58 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324
            ILCC+CG SI PN ANMC PC+R +VD+TE IPK+ + +  CR C ++L   EHW A +LES   LAL LK++ GL K  L+DA +IWT
Sbjct:   16 ILCCICGTSIAPNDANMCVPCIRSRVDITEGIPKQ-MTIYFCRGCDRYLQPPEHWIACDLESRELLALCLKRLKGLNKVRLIDAGFIWT 103          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A7R9H8I5_TIMPO (60S ribosomal export protein NMD3 n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9H8I5_TIMPO)

HSP 1 Score: 97.8 bits (242), Expect = 6.450e-22
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1
Query:   46 QMANILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324
            + A ILCC CG +I+PN ANMC PCLR QVD+TE IPK+ ++   C+ C ++L     W +  LES   L+L LKK+ GL++  LVDA ++WT
Sbjct:   13 EKAKILCCECGTAIEPNPANMCVPCLRTQVDITEGIPKQAVLHF-CKGCERYLQPPAEWVSCSLESRELLSLCLKKLKGLSRVKLVDAGFVWT 104          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A6J8ALK0_MYTCO (60S ribosomal export protein NMD3 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8ALK0_MYTCO)

HSP 1 Score: 98.2 bits (243), Expect = 1.010e-21
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 1
Query:   58 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324
            ILCC CG  I+PN +NMC  CLR QVD+TE IPK+G++   CR C ++L    HW A +LES   L++ LKK+ GL    L+DA ++WT
Sbjct:   15 ILCCQCGTQIEPNPSNMCVACLRTQVDITEGIPKQGVLYF-CRNCERYLQPPNHWVAAQLESRELLSVCLKKLGGLKTVRLIDAGFVWT 102          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A8B6GB91_MYTGA (60S ribosomal export protein NMD3 n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GB91_MYTGA)

HSP 1 Score: 93.6 bits (231), Expect = 1.500e-21
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   58 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPG-LAKQDLVDAKWIWT 324
            ILCC CG  I+PN +NMC  CLR QVD+TE IPK+G++   CR C ++L    HW A +LES   L++ LKK+ G L    L+DA ++WT
Sbjct:   15 ILCCQCGTQIEPNPSNMCVACLRTQVDITEGIPKQGVLYF-CRNCERYLQPPNHWVAAQLESRELLSVCLKKLGGGLKTVRLIDAGFVWT 103          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A8B6GBI4_MYTGA (60S ribosomal export protein NMD3 (Fragment) n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GBI4_MYTGA)

HSP 1 Score: 93.6 bits (231), Expect = 1.640e-21
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   58 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPG-LAKQDLVDAKWIWT 324
            ILCC CG  I+PN +NMC  CLR QVD+TE IPK+G++   CR C ++L    HW A +LES   L++ LKK+ G L    L+DA ++WT
Sbjct:   15 ILCCQCGTQIEPNPSNMCVACLRTQVDITEGIPKQGVLYF-CRNCERYLQPPNHWVAAQLESRELLSVCLKKLGGGLKTVRLIDAGFVWT 103          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A7R9G5D1_TIMSH (60S ribosomal export protein NMD3 (Fragment) n=1 Tax=Timema shepardi TaxID=629360 RepID=A0A7R9G5D1_TIMSH)

HSP 1 Score: 96.3 bits (238), Expect = 2.080e-21
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1
Query:   58 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324
            ILCC CG +I+PN ANMC PCLR QVD+TE IPK+ ++   C+ C ++L     W +  LES   L+L LKK+ GL++  LVDA ++WT
Sbjct:    2 ILCCECGTAIEPNPANMCVPCLRTQVDITEGIPKQAVLHF-CKGCERYLQPPAEWVSCSLESRELLSLCLKKLKGLSRVKLVDAGFVWT 89          
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A7R9IBT2_9NEOP (60S ribosomal export protein NMD3 n=6 Tax=Timema TaxID=61471 RepID=A0A7R9IBT2_9NEOP)

HSP 1 Score: 96.7 bits (239), Expect = 3.700e-21
Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   46 QMANILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324
            + A ILCC CG +I+PN ANMC PCLR QVD+TE IPK+ ++   C+ C ++L     W +  LES   L+L LKK+ GL +  LVDA ++WT
Sbjct:   13 EKAKILCCECGTAIEPNPANMCVPCLRTQVDITEGIPKQAVLHF-CKGCERYLQPPAEWVSCSLESRELLSLCLKKLKGLNRVKLVDAGFVWT 104          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6Y2_9PHAE4.050e-5688.0460S ribosomal export protein NMD3 n=1 Tax=Ectocarp... [more]
D7G1R1_ECTSI1.290e-5289.1360S ribosomal export protein NMD3 n=1 Tax=Ectocarp... [more]
A0A836CPD6_9STRA3.550e-3261.8060S ribosomal export protein NMD3 n=1 Tax=Tribonem... [more]
A0A0L0FQG9_9EUKA4.810e-2455.0660S ribosomal export protein NMD3 n=1 Tax=Sphaerof... [more]
A0A7R9H8I5_TIMPO6.450e-2249.4660S ribosomal export protein NMD3 n=1 Tax=Timema p... [more]
A0A6J8ALK0_MYTCO1.010e-2150.5660S ribosomal export protein NMD3 n=1 Tax=Mytilus ... [more]
A0A8B6GB91_MYTGA1.500e-2150.0060S ribosomal export protein NMD3 n=3 Tax=Mytilus ... [more]
A0A8B6GBI4_MYTGA1.640e-2150.0060S ribosomal export protein NMD3 (Fragment) n=2 T... [more]
A0A7R9G5D1_TIMSH2.080e-2150.5660S ribosomal export protein NMD3 (Fragment) n=1 T... [more]
A0A7R9IBT2_9NEOP3.700e-2149.4660S ribosomal export protein NMD3 n=6 Tax=Timema T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig88contigL-elsbetiae_contig88:54744..61184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue7.6e-44
Seed eggNOG ortholog2880.D7G1R1
KEGG koko:K07562
KEGG Pathwayko03008,ko03013,map03008,map03013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.amine dehydrogenase activity
EggNOG OGsCOG1499@1,KOG2613@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons3
Model size324
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig88.17830.1prot_L-elsbetiae_contig88.17830.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig88 54744..61184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816958.8271542-CDS-L-elsbetiae_contig88:54743..548401622816958.8271542-CDS-L-elsbetiae_contig88:54743..54840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig88 54744..54840 +
1691683941.815721-CDS-L-elsbetiae_contig88:54743..548401691683941.815721-CDS-L-elsbetiae_contig88:54743..54840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig88 54744..54840 +
1622816958.8391414-CDS-L-elsbetiae_contig88:58566..586491622816958.8391414-CDS-L-elsbetiae_contig88:58566..58649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig88 58567..58649 +
1691683941.8304844-CDS-L-elsbetiae_contig88:58566..586491691683941.8304844-CDS-L-elsbetiae_contig88:58566..58649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig88 58567..58649 +
1622816958.8512132-CDS-L-elsbetiae_contig88:61040..611841622816958.8512132-CDS-L-elsbetiae_contig88:61040..61184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig88 61041..61184 +
1691683941.8463094-CDS-L-elsbetiae_contig88:61040..611841691683941.8463094-CDS-L-elsbetiae_contig88:61040..61184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig88 61041..61184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig88.17830.1

>prot_L-elsbetiae_contig88.17830.1 ID=prot_L-elsbetiae_contig88.17830.1|Name=mRNA_L-elsbetiae_contig88.17830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
PLPTAAGGAGAAGKKQMANILCCLCGRSIQPNGANMCGPCLREQVDVTED
IPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDL
VDAKWIWT
back to top

mRNA from alignment at L-elsbetiae_contig88:54744..61184+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig88.17830.1 ID=mRNA_L-elsbetiae_contig88.17830.1|Name=mRNA_L-elsbetiae_contig88.17830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6441bp|location=Sequence derived from alignment at L-elsbetiae_contig88:54744..61184+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCTGCCCACGGCGGCGGGGGGGGCAGGGGCGGCGGGAAAGAAGCAGAT GGCGAACATCCTCTGCTGTCTGTGTGGGAGATCGATACAGCCCAACGGTG AGACGAATCAACCGCCCGCGCTGCCGGTGCCGCTAGATACGGCCGCGACG GTCGCCGATTTTTTTATTTCTTTTTTCTTTTTTCTTTTTTCTTACATACG GATAATACCCACACACGTTTACCAGCGCTCGGACGAGGGTCCGAGCAAAT TTAGAAAAAAAAAAAAAAAACTAGAAGAAAAAAGAAAAAAGACAGCCTAC TGATGACATATCGGAACAGAAGTTCTCCCGGACCAATGTATCTATGTATC TAAATTGTAGCGGCTCTTTTTTTATTTTTTTATTTTTCTTACGGATGCAT ACATACGTACCTTTTCTCAGGTATAAGTTAGTTAGCCTGTGACCACGGGA ATTGACCGCATCAAGTGTTGGACTAGTACGGACATTGAGAGGTACTGGAT GGAGAGATCGGAACGGTTTTTAATGTGAAGACAACATACATACATACAAC ATACGCATGGATACCCACATGTTTAACGGCGCTTTTGTAACCTATTTATT CGTTTGGATACCCCGAGAATCTCGGGGTATTTATGTACCTGGATGGAGAG ATCGGAGCGGTTTTAATGTGAAGACAGCATACATACATTACCAGCGCTCG GACGAGGGTTCGAGCAAATTTAGAAGCAGCGCACGCACCATTCTTGGTCG CTGCGTAGTAACCGCAGTGGTACATACGTATGTTTTTTCGTTCTATGTAC CTACCAGTTCCGATATTTTTCGGGTGTTTTTGGGGCGAACTGGGTGCGCT TGGTACATTTTAATTTATTTTATGAATATACAACTACCAGCAATCTGCGT CCAGTCGGCGAAAACGTCGTTCCAGAGGGACTGTGTTGTTGTAGGCATTT TCCGAACAGCCTGTGAAAGAGTCGTTCCAGAGGGAAAGCTGTTGTAGGCA CATTCCGTCGTTCCTTTTAGTGCTTCATTCCCTTGAATCCGCACGACGAC GGCCGTGTTCACCGGGGGGAGACGCACGTGGTATCTCGAAGGGGGGGTTC TACCCTTGCATCTCCCCGTGTATTACACCCACAGGACAATAGTGCTTGAT GGTGTATGTAGCGTACCGTAGGTGACATAAGATAAGACACCCCCTGGACC GATGTTCAAAGCTCAAGTACTCCACAGCAAGCAGAGCGTCAGTCCCGAAA ATCGCGGCGTTGGAAAGATCTCGTCGAGAGCTGTCCGAAAATGTGGCGTT TGTGGTTAGAATCGTGTTCTTTGCGGAGTAACCAAGCTTTCAATCTCGGT CCAGGGGGTGTCTTATCTTATGTCACCTACGGTACGCCATCACCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNTTGGTTT TCTTCGGGGGGAACCAACCTTTCCACCCCCGTCCCGGGGGGGTCTTTTTT TTTTGCCACCCCGGGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTC CCGGCGCGCGGGTTTCTGCCAACAAGCTGGTTGTCCGGGCACAGAGACCT AGAACCTACCGTATACGACACAAGATAACACACACACCCTGGAGCGATTT TCAAAGCCTGGTGACTCCGCAACGAGTATGATCACATAGTAGCAAAGGGC ACGTTTTCGGACAGCTGTTGATGAGATCTTTCCAACGACGCCCTTTTCGG GACTGACGCTCTTCTCGCTGTGGAGTGCTTGAGCTTTGAAAATCGATCCA GGGGGGGTGTTATCTTGTGTCATATGTATACGGTGTGTGGAGACGAGAGA CATATGTATGCGGTGTCTGCACAAGCCTCACACATACATGCATGGGTGCG GTGTGAAAGCCTGCCCCTTACCACATTCTGAGCGTTGGTGCGTTGCCGCA AGGTATGTGTACTTCGAAGCACGTAACGTTCGGGACGTAGGCACCTACCT GTACCACCTACCTACCTGGCTCCGCATTTTCAACACATTCGCGCATGAGG GCGCGCGTATCGCCCTGGGTTCTACCGGCGCGAATTATGGGCCTCTACAC TGTACGGTGCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCGCGCGGCGTT TTGGTGGGCGCGGGCGGCGGGTGTGGGGCAGCCTGGGGGGCGGCATGGCA CGGGAATGGAGNNNNNNNNNNCCCATTCGCGCCGGAGGGGGCGCGTCGCC CCCCGGGTTCCACCCGGGCGAATTATGGGCCCCTCCACTGTACGGGGCCC CCCCCCCCCCCCCTGTCAAGTATCGGGAACTTTGTTGCGCTCTGCCAACG ATGAGTAGTCTGCCAACGATGAGTAGTCTGCCAACGATGAGTAGTGCTCG GGTTGTTGTTGTTGGTGTTGTCTTCACATCAAGTACCGCTCCGATCTCTC TATCCATTACCTCCCTACATGAGTCCGTACGGTGTTTAGCCCATCACTTG GTGCCCGCTGCGAATGAAAGGGCGATGTTCAAAAAGAGGCGACCCACGAC TCTATACTTCCAAGTAAGCTTTTTTTCGGGTAAGAGACAGCGCTCCCGCG GAACCCCCAAAGCATCCACGTTACCCCCAAGGATCCGCCGACTGCGCTTG GATGCCGGTACATCGCAGTTTTTTTTGTTTTTTGAAAGGGGTGCGGCAAC GAGTTAAAACATCGTGGTTCTCTATGTGTCACGAGTCAGAGGCAGCGCTC GCACGGGAGAGGAGTTTGCGTGCACATAGATACTAGCCATACACACGTAG TGCTGAACCCTGCTCGCGACGGAAACATCACAGGCAGGCACCGCAGGAGG GAGTCCACCCCACCCCCCTCCTGTGTGACCCCGGTTGGGTCGTCTAGCCA GTCGTAGTGGAGGAGGGGGGCCAGTGGGGCAGACGGCGAATAAGCCAAAA ATGGGAAGAAGGAAAAAAAAACATACATACCCGTCCATAACATGAACCCC GAAGGCGTTCACGTAACCCCCATAGACCCCACCGACAGTATCTGGTGCCT ATTACCACCTGACATTGTTTTTTTATGTTTCCTCCCATTATTGGCTTATT CGTCGTCTGCCCCACTGGCCCCCATATCCTCCACTTCGACCAAAATGGCT AGACGACCCAGCCTGACATGAAGTCGGTGTGTTCGAACTTAGATGCCGCC ACCAGAGGCAGGTGGACCGGGAAGGGGGCTGTGTTTGCCCTATTTTACTG CTCTACGTGCGTGGGTTGGCGAGGGGTTGAAGTGATGGGCGTAGCCGTGT GGTGTGTGTGTGTGTGCGTGTTTGTGTGTTGTTGTTTCTTCACATTAGCT CGTATAGTCGAGATTGCTAATGCAAAAACTCTAGCAACTCACGGCCCGTG GCCACAGAAGTGCTAGAGCCATCAGAAGATCCGAAAAGGACACACGGAGG TACACCGGGCAAGGGTGTGTGTGTGTGTGTATTGGTGTGGCCGAATAAGG CGATGTTCGAGTTTTTTACGGCGCTTAAATATTATTACAGCCGAGGGTGC TTGAGGAGGAGGAGGAGAAGTAGCAGAAGGGGGACGATACCTGCGACGCT AAATGTTGCTACTGCTAGTGCTGCTGCTGGTTATGGCTTTGGCGCTGATC TTGCTGCTGGTAATGCTTGCTGGTGGCGGTTTTGACACTGCTGCTGCTAA CTGCTGCTACTGCTGCTAGACAAGGTTGTTAAGGCTTTTTTTGGGTGACG CTGATGCTGCTGTGTAATGCTAATGCTACATGTGTGTTGGTTTTTGAAAC GATGGGGCATGCATGTGCGGCAGGGGCCAACATGTGCGGGCCCTGCCTGA GGGAGCAGGTCGACGTGACCGAGGACATCCCCAAGAAGGGGCTGGTTGTC ATCCAGGTGCTTTTTTTTTATTTATTTTTCCTTCACGTTTATATCCTTTT TTGACTGGACCTTTTTACACTTTGTCGACAAAGTAAAGTTATGATAATAT TCTCGGTACATAGAAGGGGTTCAGCTTTGGAACCACGGGAGGACATCCCC AAGAAGGGGCTGGTTGTCATCCAGGTGTTTTTGTCTGAATATGTTTTTTT TTCTTCTTCACATTTATTTCCAGTGTGCTTGATGGGCTCCTTGTCACGAG GGCATCTTGCCAGAGTACCGATATATATTATGTTCTTCTTCACATTTATT TCCAGTGTGCTTGATGGGCTCCTTGCCACGAGGACATCTTGCCAGACTAC TAAACCGTGGTCACACAAAAGGGCTCCTTCCTTTCCCCGCCTAAGTTTTT TTGTCGCGAGAAAGGTTAAGCCGTCCCCTTCCCTCGTCGACGGTGAGGTC AAAGTTTTGTGTGCTGCTCTCCTTTTTTCCCCATGTCGAGTTCCGCACTT GTAGTATCCGTTGAGAACTCCAAGTACACCCAATGAGCACAAAAGCGCCA AACAAATGATTTTTTTTTATATGTGGAGTAAATACCGTAATATCCTTTGA GAACGCCCCGTGGGGCGAGAAACGCCTCGCTATCATCCCAGTGCTGCTCT CCTTTGTCTTATATATATATATATATATATAGGTCGATTACCGTATTCTA TGTTACATATTTCATTTTCGTATCCCCTGTTGGTGGGCGGTATAATCGGA GGGGAGAAATATGTAGACCTGTTGCGGGCCTGGCCGGCGAGAACCCGGCA CGGAACCCCCCGGCTTTGTTGGGGTACCAAGATAGTGTAGGTGTTGGTTG TTCCAGTTTTGTTTTACCTCACATAGCGTGTAGAGGGGAGCGAAGAGCTC CAGACTCGATATCTGTTATATTATTGCTTTGCTGGCCCTTCGGGTCCATT TTATTTTTCGTGTACCTTTTCTTAGGTATAAGTTAGCCTGTGACCACGGG AATTGACCGCATCAAGTGTCGGATTAGTACGGACATTGAGAGGTACTGGA TGGAGAGATCGGAACGGTTTTTAATGTGAAGACAACATACATACATACAT ACCGTAGTACCCCTTGAGAACGCCCCGCGGGGCAAGAAGTAGGCCTTGAC TCCGTTGGCCATTTGTGGAATTGCGGAGGAACAACACTTGTTATTGTACT GAGTTTAGTGTAGAGAAAAAAGAGATGTATGCACTTATCTAAATCGAAAA AAAAGTGGCCAACGGAGTCAAGGCCTATTGTAGCAAGAAGCGCTTCGCTA CCACCCAGGTGAGGTTCTCTCTTGTTTTCCACGTCGAGTACCGTAAATGT CGTAGTATCCCTTGAGAACGCCGCGTGGGGTGGCGAGAAGGTTTGGGTTA AGAATAACAACCCCCTGTGGGGGGCGGCGTTTGGGCGCTTCTCAAAGTTA GAGGGCGGTTTTTAAAACTAAATAATATTGTAGAAGGGAAAAATACGGAC CCCCCCGCCAGGGGCGTTTCTCCAAGTTATAGGGCAGGTTTTAAAGCTAG AAGGAAAAAAATCGACCCCCCCGCTCCCCCCCGGCGTTTTCAAGTTTTTT ACCGTGCATCGGTCGTAGTTTCGGGGGGGGGGCGGCGTTCTCTTTGAAGG AAGAGGCGTTCTTACCGTATACGACACACAAGATAACACACCCCCTGGAC CGATTTTCAAGGCTCGGTTACTCCGCGACGAGCATGATTCTAAAACCAAA CGACACGTTTTCGGACAGCTCTTGATGAGATCTTTCCAACGCCGCCTCTC TCGGGACTGACAACTTTCTCGCTGTGGAGAACTTGAGCTTCGAAAATCGG TCCAGTGTGTTTTGTGTTATCTTGTGTCGTATACGGTAGGGTCTAGGTCG CTGTACCAAGCTTATTCGTATGAATCGTGCGGAGTTTGTGTGGCCATTCT GTCGTGTCGCGGGGGCTCCGTGTCGCGGGGGCTCCGTGTCACGGGGGCAC CGTGGCGACATAGTTCGAGTTTTCGTCGCAAGCTGCGTTATTTTGCTTGC AGACAGCCACTGCTGATCCTTATTCTGTCCCCCCAGCAGTCGCAGAGGGA TGCGATAGTACCAGAGAGCAGCGAGTCTTGATGGGTGACGTTTCCCGCCC ACACCCACTAATCCCATACATACGTACTTTTCTGTTCGCCTGATGTGCTC TGCTCTCTCCGCACATACTCGTCGTCTACGCCCCCCCCCCCCCTCCCCTC CCACCACTCACACACGGACAACTCCCCCCCCCCCCCCCCCCCGCGCCCCG ACCTCAGGCANNNNNNNNNNCCCCCCCCCCCAGCAGACACCCACACAAGA ACAGCCCCCCCCCCCCCCCCCCCGCGCAATTATTCAACGAATCGCAGTGC CGCCGATGCCTGAAGTGGCTCACGAAGAACGAGCACTGGTCGGCGTTCGA GCTAGAGTCAGCGCCGTTCCTGGCGCTGGTCCTCAAGAAGATCCCGGGCC TCGCCAAGCAGGATCTGGTCGACGCAAAGTGGATATGGACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig88:54744..61184+

>mRNA_L-elsbetiae_contig88.17830.1 ID=mRNA_L-elsbetiae_contig88.17830.1|Name=mRNA_L-elsbetiae_contig88.17830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig88:54744..61184+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCTGCCCACGGCGGCGGGGGGGGCAGGGGCGGCGGGAAAGAAGCAGAT
GGCGAACATCCTCTGCTGTCTGTGTGGGAGATCGATACAGCCCAACGCCC
CTGCCCACGGCGGCGGGGGGGGCAGGGGCGGCGGGAAAGAAGCAGATGGC
GAACATCCTCTGCTGTCTGTGTGGGAGATCGATACAGCCCAACGGGGCCA
ACATGTGCGGGCCCTGCCTGAGGGAGCAGGTCGACGTGACCGAGGACATC
CCCAAGAAGGGGCTGGTTGTCATCCAGGGGCCAACATGTGCGGGCCCTGC
CTGAGGGAGCAGGTCGACGTGACCGAGGACATCCCCAAGAAGGGGCTGGT
TGTCATCCAGTGCCGCCGATGCCTGAAGTGGCTCACGAAGAACGAGCACT
GGTCGGCGTTCGAGCTAGAGTCAGCGCCGTTCCTGGCGCTGGTCCTCAAG
AAGATCCCGGGCCTCGCCAAGCAGGATCTGGTCGACGCAAAGTGGATATG
GACGTGCCGCCGATGCCTGAAGTGGCTCACGAAGAACGAGCACTGGTCGG
CGTTCGAGCTAGAGTCAGCGCCGTTCCTGGCGCTGGTCCTCAAGAAGATC
CCGGGCCTCGCCAAGCAGGATCTGGTCGACGCAAAGTGGATATGGACG
back to top