mRNA_L-elsbetiae_contig88.17830.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A6H5J6Y2_9PHAE (60S ribosomal export protein NMD3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Y2_9PHAE) HSP 1 Score: 181 bits (458), Expect = 4.050e-56 Identity = 81/92 (88.04%), Postives = 86/92 (93.48%), Query Frame = 1 Query: 49 MANILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324 +A ILCCLCGR IQPNGANMCG CL++QVDVTE IPKKGL +IQCRRCLKWLTKN+HWS FELESAPFLALVLKKIPGLAKQDLVDAKWIWT Sbjct: 61 LATILCCLCGRPIQPNGANMCGACLQDQVDVTEGIPKKGLTIIQCRRCLKWLTKNDHWSGFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 152
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: D7G1R1_ECTSI (60S ribosomal export protein NMD3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R1_ECTSI) HSP 1 Score: 182 bits (462), Expect = 1.290e-52 Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1 Query: 49 MANILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324 +A ILCCLCGR IQPNGANMCG CLR+QVDVTE IPKKGL +IQCRRCLKWLTKN+HWS FELESAPFLALVLKKIPGLAKQDLVDAKWIWT Sbjct: 60 LATILCCLCGRPIQPNGANMCGACLRDQVDVTEGIPKKGLTIIQCRRCLKWLTKNDHWSGFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 151
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A836CPD6_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPD6_9STRA) HSP 1 Score: 127 bits (318), Expect = 3.550e-32 Identity = 55/89 (61.80%), Postives = 71/89 (79.78%), Query Frame = 1 Query: 58 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324 ILCCLCG+SIQPN A +CG CLR +VD+TE+I +KGL V QCR+CL+W KN+H+ +LES LAL LK+IPGL+K D+VDA ++WT Sbjct: 9 ILCCLCGKSIQPNSAALCGECLRAEVDITENIQEKGLKVYQCRKCLRWQGKNDHYVPCQLESLELLALCLKRIPGLSKADIVDAAFVWT 97
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A0L0FQG9_9EUKA (60S ribosomal export protein NMD3 n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FQG9_9EUKA) HSP 1 Score: 104 bits (260), Expect = 4.810e-24 Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 1 Query: 58 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324 ILCC+CG SI PN ANMC PC+R +VD+TE IPK+ + + CR C ++L EHW A +LES LAL LK++ GL K L+DA +IWT Sbjct: 16 ILCCICGTSIAPNDANMCVPCIRSRVDITEGIPKQ-MTIYFCRGCDRYLQPPEHWIACDLESRELLALCLKRLKGLNKVRLIDAGFIWT 103
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A7R9H8I5_TIMPO (60S ribosomal export protein NMD3 n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9H8I5_TIMPO) HSP 1 Score: 97.8 bits (242), Expect = 6.450e-22 Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1 Query: 46 QMANILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324 + A ILCC CG +I+PN ANMC PCLR QVD+TE IPK+ ++ C+ C ++L W + LES L+L LKK+ GL++ LVDA ++WT Sbjct: 13 EKAKILCCECGTAIEPNPANMCVPCLRTQVDITEGIPKQAVLHF-CKGCERYLQPPAEWVSCSLESRELLSLCLKKLKGLSRVKLVDAGFVWT 104
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A6J8ALK0_MYTCO (60S ribosomal export protein NMD3 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8ALK0_MYTCO) HSP 1 Score: 98.2 bits (243), Expect = 1.010e-21 Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 1 Query: 58 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324 ILCC CG I+PN +NMC CLR QVD+TE IPK+G++ CR C ++L HW A +LES L++ LKK+ GL L+DA ++WT Sbjct: 15 ILCCQCGTQIEPNPSNMCVACLRTQVDITEGIPKQGVLYF-CRNCERYLQPPNHWVAAQLESRELLSVCLKKLGGLKTVRLIDAGFVWT 102
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A8B6GB91_MYTGA (60S ribosomal export protein NMD3 n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GB91_MYTGA) HSP 1 Score: 93.6 bits (231), Expect = 1.500e-21 Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1 Query: 58 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPG-LAKQDLVDAKWIWT 324 ILCC CG I+PN +NMC CLR QVD+TE IPK+G++ CR C ++L HW A +LES L++ LKK+ G L L+DA ++WT Sbjct: 15 ILCCQCGTQIEPNPSNMCVACLRTQVDITEGIPKQGVLYF-CRNCERYLQPPNHWVAAQLESRELLSVCLKKLGGGLKTVRLIDAGFVWT 103
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A8B6GBI4_MYTGA (60S ribosomal export protein NMD3 (Fragment) n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GBI4_MYTGA) HSP 1 Score: 93.6 bits (231), Expect = 1.640e-21 Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1 Query: 58 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPG-LAKQDLVDAKWIWT 324 ILCC CG I+PN +NMC CLR QVD+TE IPK+G++ CR C ++L HW A +LES L++ LKK+ G L L+DA ++WT Sbjct: 15 ILCCQCGTQIEPNPSNMCVACLRTQVDITEGIPKQGVLYF-CRNCERYLQPPNHWVAAQLESRELLSVCLKKLGGGLKTVRLIDAGFVWT 103
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A7R9G5D1_TIMSH (60S ribosomal export protein NMD3 (Fragment) n=1 Tax=Timema shepardi TaxID=629360 RepID=A0A7R9G5D1_TIMSH) HSP 1 Score: 96.3 bits (238), Expect = 2.080e-21 Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1 Query: 58 ILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324 ILCC CG +I+PN ANMC PCLR QVD+TE IPK+ ++ C+ C ++L W + LES L+L LKK+ GL++ LVDA ++WT Sbjct: 2 ILCCECGTAIEPNPANMCVPCLRTQVDITEGIPKQAVLHF-CKGCERYLQPPAEWVSCSLESRELLSLCLKKLKGLSRVKLVDAGFVWT 89
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Match: A0A7R9IBT2_9NEOP (60S ribosomal export protein NMD3 n=6 Tax=Timema TaxID=61471 RepID=A0A7R9IBT2_9NEOP) HSP 1 Score: 96.7 bits (239), Expect = 3.700e-21 Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 1 Query: 46 QMANILCCLCGRSIQPNGANMCGPCLREQVDVTEDIPKKGLVVIQCRRCLKWLTKNEHWSAFELESAPFLALVLKKIPGLAKQDLVDAKWIWT 324 + A ILCC CG +I+PN ANMC PCLR QVD+TE IPK+ ++ C+ C ++L W + LES L+L LKK+ GL + LVDA ++WT Sbjct: 13 EKAKILCCECGTAIEPNPANMCVPCLRTQVDITEGIPKQAVLHF-CKGCERYLQPPAEWVSCSLESRELLSLCLKKLKGLNRVKLVDAGFVWT 104 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig88.17830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig88.17830.1 >prot_L-elsbetiae_contig88.17830.1 ID=prot_L-elsbetiae_contig88.17830.1|Name=mRNA_L-elsbetiae_contig88.17830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp PLPTAAGGAGAAGKKQMANILCCLCGRSIQPNGANMCGPCLREQVDVTEDback to top mRNA from alignment at L-elsbetiae_contig88:54744..61184+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig88.17830.1 ID=mRNA_L-elsbetiae_contig88.17830.1|Name=mRNA_L-elsbetiae_contig88.17830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6441bp|location=Sequence derived from alignment at L-elsbetiae_contig88:54744..61184+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig88:54744..61184+ >mRNA_L-elsbetiae_contig88.17830.1 ID=mRNA_L-elsbetiae_contig88.17830.1|Name=mRNA_L-elsbetiae_contig88.17830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig88:54744..61184+ (Laminarionema elsbetiae ELsaHSoW15)back to top |