prot_L-elsbetiae_contig8747.17781.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig8747.17781.1
Unique Name	prot_L-elsbetiae_contig8747.17781.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	401

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig8747.17781.1 vs. uniprot
Match: A0A6H5K4V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V7_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 3.740e-68
Identity = 146/347 (42.07%), Postives = 213/347 (61.38%), Query Frame = 0

Query:   64 LDSSQDSSYTKVQQLFSNAARIVPIKNDPRGDNKFVTAKELEIVDKCREDILSAMDSPWSCSTASPPAPPVLQ-EHVLLIAMFALACVQAILVVIGPDIKDELAPFPEYEWGGKPMPWQDLDESFTEEQEDSYSSP--------EESFKKPAGRQAAYVKDVLKIDTPESRHYAENNYATVKNAVPQFVLKLIKSYIAKRGNRGIFKRDALFTKVVDNKAQYNLTRQIFNCSLDWVMYFLIAVPVTLSLVKHGFLHVCGSDMMRSAMVVSYILSIKSSGDVKKRLQAFNEDFASFLSEFYGMEFGISVLVGCDEGSKVHLIPKSYGGDEAIMNRKIVNGEFTTVVLE 401
            +D     S+ K++   + AAR+  + + P  +++ V   +L++VD+C   + SA+         +  AP +   +  +L+A F LA V A+LVV+G     +       E+    +P Q   E+ TEE+ED   +          +S+K     QA YV + L I+TP+S  +A+ NY  VK AVP ++L LI+ Y+ +RG    FK +A+FTKVV++   ++L+RQ+FNC+LDWVMYFLIAVPV L+LVKHG L++ G  + R+A VV+YILS   +GD  KR QAF+EDFA +L+ F+  +FGISVLVGC EGS VH+IPKSYGG +  + RKI  GEF  V L+
Sbjct:  463 IDRVSKESFQKMEANLTQAARMAAVTDCPFRNSRKVPPDKLKMVDQCVAKMDSAVCDHTGTGGGTSDAPDLNDTDDAVLLASFGLAVVVALLVVVGSKSDGQ-------EFTPPVIPCQGKHEAITEEKEDEIRAELAEDKVRSTQSYKTYCKEQADYVTNDLGIETPQSMQFADENYTVVKGAVPVYILDLIEKYMKRRG----FKNEAMFTKVVNDVVYHDLSRQMFNCALDWVMYFLIAVPVALALVKHGLLNMVGGGL-RAAKVVTYILSPAKAGDATKRHQAFHEDFAHYLAGFFKTDFGISVLVGCVEGSIVHIIPKSYGGKDEEVERKIKAGEFLEVHLK 797

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig8747.17781.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig8747.17781.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5K4V7_9PHAE	3.740e-68	42.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 138..157
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 329..401
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..137
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 307..328
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 282..301
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 302..306
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 158..281

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig8747	contig	L-elsbetiae_contig8747:3717..5466 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig8747.17781.1	mRNA_L-elsbetiae_contig8747.17781.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig8747 3717..5466 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig8747.17781.1 ID=prot_L-elsbetiae_contig8747.17781.1|Name=mRNA_L-elsbetiae_contig8747.17781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=401bp
GGGAGSADDGGAVLQKPEPGNEAHSASTTCVPRKRYPTRKVVFHGIKELL
LSSRVVQVFRGAALDSSQDSSYTKVQQLFSNAARIVPIKNDPRGDNKFVT
AKELEIVDKCREDILSAMDSPWSCSTASPPAPPVLQEHVLLIAMFALACV
QAILVVIGPDIKDELAPFPEYEWGGKPMPWQDLDESFTEEQEDSYSSPEE
SFKKPAGRQAAYVKDVLKIDTPESRHYAENNYATVKNAVPQFVLKLIKSY
IAKRGNRGIFKRDALFTKVVDNKAQYNLTRQIFNCSLDWVMYFLIAVPVT
LSLVKHGFLHVCGSDMMRSAMVVSYILSIKSSGDVKKRLQAFNEDFASFL
SEFYGMEFGISVLVGCDEGSKVHLIPKSYGGDEAIMNRKIVNGEFTTVVL
E