mRNA_L-elsbetiae_contig8747.17781.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8747.17781.1
Unique NamemRNA_L-elsbetiae_contig8747.17781.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8747.17781.1 vs. uniprot
Match: A0A6H5K4V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V7_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 3.740e-68
Identity = 146/347 (42.07%), Postives = 213/347 (61.38%), Query Frame = 1 
Query:  190 LDSSQDSSYTKVQQLFSNAARIVPIKNDPRGDNKFVTAKELEIVDKCREDILSAMDSPWSCSTASPPAPPVLQ-EHVLLIAMFALACVQAILVVIGPDIKDELAPFPEYEWGGKPMPWQDLDESFTEEQEDSYSSP--------EESFKKPAGRQAAYVKDVLKIDTPESRHYAENNYATVKNAVPQFVLKLIKSYIAKRGNRGIFKRDALFTKVVDNKAQYNLTRQIFNCSLDWVMYFLIAVPVTLSLVKHGFLHVCGSDMMRSAMVVSYILSIKSSGDVKKRLQAFNEDFASFLSEFYGMEFGISVLVGCDEGSKVHLIPKSYGGDEAIMNRKIVNGEFTTVVLE 1203
            +D     S+ K++   + AAR+  + + P  +++ V   +L++VD+C   + SA+         +  AP +   +  +L+A F LA V A+LVV+G     +       E+    +P Q   E+ TEE+ED   +          +S+K     QA YV + L I+TP+S  +A+ NY  VK AVP ++L LI+ Y+ +RG    FK +A+FTKVV++   ++L+RQ+FNC+LDWVMYFLIAVPV L+LVKHG L++ G  + R+A VV+YILS   +GD  KR QAF+EDFA +L+ F+  +FGISVLVGC EGS VH+IPKSYGG +  + RKI  GEF  V L+
Sbjct:  463 IDRVSKESFQKMEANLTQAARMAAVTDCPFRNSRKVPPDKLKMVDQCVAKMDSAVCDHTGTGGGTSDAPDLNDTDDAVLLASFGLAVVVALLVVVGSKSDGQ-------EFTPPVIPCQGKHEAITEEKEDEIRAELAEDKVRSTQSYKTYCKEQADYVTNDLGIETPQSMQFADENYTVVKGAVPVYILDLIEKYMKRRG----FKNEAMFTKVVNDVVYHDLSRQMFNCALDWVMYFLIAVPVALALVKHGLLNMVGGGL-RAAKVVTYILSPAKAGDATKRHQAFHEDFAHYLAGFFKTDFGISVLVGCVEGSIVHIIPKSYGGKDEEVERKIKAGEFLEVHLK 797
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8747.17781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4V7_9PHAE3.740e-6842.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8747contigL-elsbetiae_contig8747:3717..5466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_004930.2
Exons3
Model size1205
Cds size1203
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8747.17781.1prot_L-elsbetiae_contig8747.17781.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8747 3717..5466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816954.8790293-CDS-L-elsbetiae_contig8747:3716..38361622816954.8790293-CDS-L-elsbetiae_contig8747:3716..3836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8747 3717..3836 +
1691683938.8521507-CDS-L-elsbetiae_contig8747:3716..38361691683938.8521507-CDS-L-elsbetiae_contig8747:3716..3836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8747 3717..3836 +
1622816954.889523-CDS-L-elsbetiae_contig8747:4157..46101622816954.889523-CDS-L-elsbetiae_contig8747:4157..4610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8747 4158..4610 +
1691683938.8634884-CDS-L-elsbetiae_contig8747:4157..46101691683938.8634884-CDS-L-elsbetiae_contig8747:4157..4610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8747 4158..4610 +
1622816954.89995-CDS-L-elsbetiae_contig8747:4836..54661622816954.89995-CDS-L-elsbetiae_contig8747:4836..5466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8747 4837..5466 +
1691683938.8750327-CDS-L-elsbetiae_contig8747:4836..54661691683938.8750327-CDS-L-elsbetiae_contig8747:4836..5466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8747 4837..5466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8747.17781.1

>prot_L-elsbetiae_contig8747.17781.1 ID=prot_L-elsbetiae_contig8747.17781.1|Name=mRNA_L-elsbetiae_contig8747.17781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=401bp
GGGAGSADDGGAVLQKPEPGNEAHSASTTCVPRKRYPTRKVVFHGIKELL
LSSRVVQVFRGAALDSSQDSSYTKVQQLFSNAARIVPIKNDPRGDNKFVT
AKELEIVDKCREDILSAMDSPWSCSTASPPAPPVLQEHVLLIAMFALACV
QAILVVIGPDIKDELAPFPEYEWGGKPMPWQDLDESFTEEQEDSYSSPEE
SFKKPAGRQAAYVKDVLKIDTPESRHYAENNYATVKNAVPQFVLKLIKSY
IAKRGNRGIFKRDALFTKVVDNKAQYNLTRQIFNCSLDWVMYFLIAVPVT
LSLVKHGFLHVCGSDMMRSAMVVSYILSIKSSGDVKKRLQAFNEDFASFL
SEFYGMEFGISVLVGCDEGSKVHLIPKSYGGDEAIMNRKIVNGEFTTVVL
E
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mRNA from alignment at L-elsbetiae_contig8747:3717..5466+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8747.17781.1 ID=mRNA_L-elsbetiae_contig8747.17781.1|Name=mRNA_L-elsbetiae_contig8747.17781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1750bp|location=Sequence derived from alignment at L-elsbetiae_contig8747:3717..5466+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGCGGAGCGGGCTCGGCGGACGATGGGGGAGCTGTTCTTCAGAAGCC
GGAGCCGGGCAACGAGGCGCACAGTGCATCAACGACATGCGTCCCCAGGA
AACGGTATCCCACCCGAAAGGTCAGTGCTGCTAAGAAGGGGGATGTTTTA
AAGTCGAAAAGAGTCACATTGCTTCGTACAAAATCACTCCCGTGAAACAT
AGTTTTGGGGTGGAAAAATCATCCAATACGGGGAGTACTGGGCTAAGTTT
GTTTCTATTTGAGATCACAGGTACTCCTTCAGAGCCACGTCAACACACCC
CTCGCTTTGGTTTTGATTTAGTCTAAGGGGAAAACCTGTATTCAAATGGT
CTTTGAAAAAACAACCCTCGTTTTCATTTTTGCATGGCATTCAAAATATT
TCCCAAACCGCCCCGCGTTGCCATCCGCTCCTTTTGTACAGGTGGTGTTC
CACGGAATCAAGGAGCTGCTCCTATCTTCACGGGTCGTCCAGGTGTTCCG
GGGAGCTGCACTGGATTCAAGCCAAGACTCGTCGTACACCAAGGTTCAAC
AACTGTTCTCCAATGCAGCCAGAATCGTCCCGATCAAAAACGACCCTCGC
GGTGACAACAAGTTTGTCACCGCAAAAGAGTTGGAGATCGTCGACAAGTG
CCGGGAGGACATTCTGTCCGCAATGGATTCCCCGTGGAGCTGTTCCACTG
CCTCTCCTCCCGCACCCCCGGTCCTCCAAGAACACGTCCTGCTGATCGCG
ATGTTCGCGCTCGCCTGTGTACAAGCCATCCTCGTCGTGATCGGCCCGGA
CATCAAAGACGAGCTGGCGCCGTTTCCAGAGTATGAGTGGGGCGGCAAAC
CGATGCCCTGGCAGGACCTCGACGAGAGCTTCACAGAAGAGCAGGTACAA
CTTTGTCTTACCTTACGATCAATGTGATTTTTTATCCGATCCGCGCGCGC
AGTTCAAGCTTGGCTGTCCACGCGCGTTATGTCCCTGCTCGCGTCGCTGG
ACGCGGCACCGGCTTGTCGTTCGTTCTTGTTTATTGTACACAGGTCTTTT
CTCTCGTGCAACATTTGTTTTCTGCAATTGAACCACGGGTCATCCTTTGT
CTGAACTATCTTCCGTACAGGAGGATTCATACTCGTCGCCGGAGGAATCG
TTCAAGAAGCCTGCCGGAAGACAAGCCGCGTACGTCAAAGACGTGTTGAA
GATCGACACCCCCGAGTCCAGGCACTACGCCGAGAACAACTACGCAACGG
TGAAGAATGCGGTCCCCCAGTTCGTGTTGAAACTAATCAAGTCGTATATC
GCGAAGCGTGGAAACAGGGGTATCTTCAAAAGAGACGCGTTGTTCACCAA
GGTTGTGGACAACAAGGCACAATACAACCTGACCCGCCAGATCTTCAACT
GTAGCCTCGACTGGGTGATGTACTTTTTGATTGCGGTGCCGGTGACTCTC
AGTCTCGTGAAGCACGGTTTTCTCCACGTGTGTGGGTCGGACATGATGCG
CTCTGCAATGGTAGTCTCGTATATCCTGTCCATCAAGTCTTCGGGAGACG
TAAAGAAGCGTCTCCAAGCGTTCAACGAAGACTTCGCATCGTTTCTGAGC
GAGTTTTATGGGATGGAGTTTGGGATTAGTGTTCTCGTGGGTTGTGACGA
AGGCTCGAAGGTGCACCTTATCCCGAAGTCGTACGGTGGTGACGAGGCTA
TTATGAATCGTAAGATCGTTAATGGAGAGTTTACGACTGTCGTGTTGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8747:3717..5466+

>mRNA_L-elsbetiae_contig8747.17781.1 ID=mRNA_L-elsbetiae_contig8747.17781.1|Name=mRNA_L-elsbetiae_contig8747.17781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2406bp|location=Sequence derived from alignment at L-elsbetiae_contig8747:3717..5466+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGCGGAGCGGGCTCGGCGGACGATGGGGGAGCTGTTCTTCAGAAGCC
GGAGCCGGGCAACGAGGCGCACAGTGCATCAACGACATGCGTCCCCAGGA
AACGGTATCCCACCCGAAAGGGGGGCGGAGCGGGCTCGGCGGACGATGGG
GGAGCTGTTCTTCAGAAGCCGGAGCCGGGCAACGAGGCGCACAGTGCATC
AACGACATGCGTCCCCAGGAAACGGTATCCCACCCGAAAGGTGGTGTTCC
ACGGAATCAAGGAGCTGCTCCTATCTTCACGGGTCGTCCAGGTGTTCCGG
GGAGCTGCACTGGATTCAAGCCAAGACTCGTCGTACACCAAGGTTCAACA
ACTGTTCTCCAATGCAGCCAGAATCGTCCCGATCAAAAACGACCCTCGCG
GTGACAACAAGTTTGTCACCGCAAAAGAGTTGGAGATCGTCGACAAGTGC
CGGGAGGACATTCTGTCCGCAATGGATTCCCCGTGGAGCTGTTCCACTGC
CTCTCCTCCCGCACCCCCGGTCCTCCAAGAACACGTCCTGCTGATCGCGA
TGTTCGCGCTCGCCTGTGTACAAGCCATCCTCGTCGTGATCGGCCCGGAC
ATCAAAGACGAGCTGGCGCCGTTTCCAGAGTATGAGTGGGGCGGCAAACC
GATGCCCTGGCAGGACCTCGACGAGAGCTTCACAGAAGAGCAGGTGGTGT
TCCACGGAATCAAGGAGCTGCTCCTATCTTCACGGGTCGTCCAGGTGTTC
CGGGGAGCTGCACTGGATTCAAGCCAAGACTCGTCGTACACCAAGGTTCA
ACAACTGTTCTCCAATGCAGCCAGAATCGTCCCGATCAAAAACGACCCTC
GCGGTGACAACAAGTTTGTCACCGCAAAAGAGTTGGAGATCGTCGACAAG
TGCCGGGAGGACATTCTGTCCGCAATGGATTCCCCGTGGAGCTGTTCCAC
TGCCTCTCCTCCCGCACCCCCGGTCCTCCAAGAACACGTCCTGCTGATCG
CGATGTTCGCGCTCGCCTGTGTACAAGCCATCCTCGTCGTGATCGGCCCG
GACATCAAAGACGAGCTGGCGCCGTTTCCAGAGTATGAGTGGGGCGGCAA
ACCGATGCCCTGGCAGGACCTCGACGAGAGCTTCACAGAAGAGCAGGAGG
ATTCATACTCGTCGCCGGAGGAATCGTTCAAGAAGCCTGCCGGAAGACAA
GCCGCGTACGTCAAAGACGTGTTGAAGATCGACACCCCCGAGTCCAGGCA
CTACGCCGAGAACAACTACGCAACGGTGAAGAATGCGGTCCCCCAGTTCG
TGTTGAAACTAATCAAGTCGTATATCGCGAAGCGTGGAAACAGGGGTATC
TTCAAAAGAGACGCGTTGTTCACCAAGGTTGTGGACAACAAGGCACAATA
CAACCTGACCCGCCAGATCTTCAACTGTAGCCTCGACTGGGTGATGTACT
TTTTGATTGCGGTGCCGGTGACTCTCAGTCTCGTGAAGCACGGTTTTCTC
CACGTGTGTGGGTCGGACATGATGCGCTCTGCAATGGTAGTCTCGTATAT
CCTGTCCATCAAGTCTTCGGGAGACGTAAAGAAGCGTCTCCAAGCGTTCA
ACGAAGACTTCGCATCGTTTCTGAGCGAGTTTTATGGGATGGAGTTTGGG
ATTAGTGTTCTCGTGGGTTGTGACGAAGGCTCGAAGGTGCACCTTATCCC
GAAGTCGTACGGTGGTGACGAGGCTATTATGAATCGTAAGATCGTTAATG
GAGAGTTTACGACTGTCGTGTTGGAGGAGGATTCATACTCGTCGCCGGAG
GAATCGTTCAAGAAGCCTGCCGGAAGACAAGCCGCGTACGTCAAAGACGT
GTTGAAGATCGACACCCCCGAGTCCAGGCACTACGCCGAGAACAACTACG
CAACGGTGAAGAATGCGGTCCCCCAGTTCGTGTTGAAACTAATCAAGTCG
TATATCGCGAAGCGTGGAAACAGGGGTATCTTCAAAAGAGACGCGTTGTT
CACCAAGGTTGTGGACAACAAGGCACAATACAACCTGACCCGCCAGATCT
TCAACTGTAGCCTCGACTGGGTGATGTACTTTTTGATTGCGGTGCCGGTG
ACTCTCAGTCTCGTGAAGCACGGTTTTCTCCACGTGTGTGGGTCGGACAT
GATGCGCTCTGCAATGGTAGTCTCGTATATCCTGTCCATCAAGTCTTCGG
GAGACGTAAAGAAGCGTCTCCAAGCGTTCAACGAAGACTTCGCATCGTTT
CTGAGCGAGTTTTATGGGATGGAGTTTGGGATTAGTGTTCTCGTGGGTTG
TGACGAAGGCTCGAAGGTGCACCTTATCCCGAAGTCGTACGGTGGTGACG
AGGCTATTATGAATCGTAAGATCGTTAATGGAGAGTTTACGACTGTCGTG
TTGGAG
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