prot_L-elsbetiae_contig866.17693.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig866.17693.1
Unique Nameprot_L-elsbetiae_contig866.17693.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length802
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig866.17693.1 vs. uniprot
Match: D8LCE2_ECTSI (Nuclear pore complex protein Nup85 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE2_ECTSI)

HSP 1 Score: 849 bits (2194), Expect = 5.830e-299
Identity = 500/806 (62.03%), Postives = 555/806 (68.86%), Query Frame = 0 
Query:   23 LGHQGWAARRLVLACHRIFVDHGGGAQTGRNTDVVSESLAHRGEIYWCLTNIDADVVSASTARTEADLADENIFHDGLTDFYHVWTLAEAFLLDSAPLPAAPLLRWLNMYCQSGEDENKRWELDEAERAALEADASGRSADPDSEVYWEALRSLVMSVSPRRAAEMLRSHPEGRDNASEVGALARQLESMPLLLPERVDGEDPGSAGGTGEAGAQVDREWFFATWTRWQKSCKAAAKKFGVDTDVGGDRGSGDSSSEQQRHLRWLWCALCGKRSCLVEATQSWSELFAAVLAFEKPATRKEGVATLMRECLQEYRELPHESFLTRVIRDASAGAVDSILRFARDHGETLALSACATHLVDLLSRAERTSVTNQQRSWFFRRLAGHLKVFPCGGWELAAAYLGDGRDNXXXXXXXXXXXEVQLLRDLARGATPRSERAAHELVGWCHANSLGEETAAAVARARAAAWIGKTGFSAAAMGTG---GEGEESDAAVRVQGACGKAAYWLAKAGGGAQLERLCAEVSERLMVEVSPRPEDAAGVE-AQQAVLAEADGVLAAIPPGITGPELCFLESYKEIADLLSA-------------VGER-----GGEARLAGALAVEMLAPRDGYDGVAPTPPPRSWAHLLCLSVPALEATAAAAVAGAEGRAAVFRDEGQGEAVVVTAAQVHALLAKLQALAASENRVGSVCGVVGRS-----ATRSTLASAPAPYGFCAGGRGGGQQEEVLKIRRALATCLGATMMIQNAQEAAPSQAFGGRQQGLASGRRSEMSLLGRKRLPAGALMAPRVAV 801
            LG+QGWAAR LVLA HRIF +    AQ G   D+VSESL HRG I+WCLT+I+++   AS A TEAD  DE++FHDGLTDFYHVWTLAEAFLLDS PLPAAPLLRWL MY  SGEDE  R ELDE ER ALEADA+G SADP+   YW+ALRSLV+ V+PRRAAE+LRSHPEGRDNASEVGALARQLE+MPLLL E               A A +DRE FF TWTRWQK CKAAA +FGV   VG DRG GD   E+ R LRWLW  LCG+R CLVEAT +WS  FAAVLA+E+P TRKE VA++MREC + Y E   E+FLT+VIRDASAGAVDSIL+FARDHG+TLALS CATHLVD+LSRA+ T+VT+QQRSWFFRRLA  L+  PCG WELAA YL  G              E  LLR+LA G  P SERA HELV WC A  LGEE  AAV RAR AAWI KTG SA AMGT     EGE S    RV GACGKAAYWLAK GG  QLERLCAEVSERLMVEV      AA V+ AQQ VLAEADGVLAA+PPG+ GPEL FL  YKEIADLLSA             +G       G  ARLAGALAV+MLAPR   DG AP                         VAGA        DEG+  +  VT AQVHALLAKLQAL ASE+RVGSV GV  RS         TLA+APAPYGFC+GG  G   E+V +IRRALA CLGA MM QNA EAAP     GR++G     R + +LLG +RLPA AL+ PRVAV
Sbjct:   39 LGYQGWAARHLVLAFHRIFAEQSERAQWGDTGDLVSESLEHRGVIFWCLTHINSNSDVASAAPTEADRRDEDVFHDGLTDFYHVWTLAEAFLLDSIPLPAAPLLRWLKMYSLSGEDEAARSELDETERVALEADAAGGSADPNP-AYWDALRSLVVGVAPRRAAELLRSHPEGRDNASEVGALARQLENMPLLLREGXXXXXXXXXXXXXXAEAHLDREGFFETWTRWQKGCKAAAGRFGVVVGVGDDRGGGDVGPER-RQLRWLWGVLCGERGCLVEATNTWSGFFAAVLAYERPDTRKEEVASVMRECTRVYSEHQEEAFLTKVIRDASAGAVDSILKFARDHGDTLALSVCATHLVDVLSRAKFTAVTHQQRSWFFRRLADRLRASPCGFWELAATYLSGGSSRDGGDDEDD---EAGLLRELALGVVPESERATHELVEWCRARGLGEEVEAAVCRARGAAWIAKTGLSAVAMGTAVAAAEGETSSDGARVPGACGKAAYWLAKGGGWVQLERLCAEVSERLMVEVYSGVGSAADVQQAQQVVLAEADGVLAAVPPGVNGPELSFLGRYKEIADLLSAEAAGQPPPPHASGIGSSSPAAVGPGARLAGALAVDMLAPRGSCDGDAP-------------------------VAGAGA------DEGEEASAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGCGGGTLATAPAPYGFCSGGGSG--VEQVSEIRRALAGCLGAAMMAQNAAEAAPEAVGSGRRRG----GRGDFTLLGTRRLPAEALVDPRVAV 802
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig866.17693.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCE2_ECTSI5.830e-29962.03Nuclear pore complex protein Nup85 n=2 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011502Nucleoporin Nup85-likePFAMPF07575Nucleopor_Nup85coord: 30..392
e-value: 4.6E-21
score: 75.0
IPR011502Nucleoporin Nup85-likePANTHERPTHR13373FROUNT PROTEIN-RELATEDcoord: 51..425
coord: 515..754

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig866contigL-elsbetiae_contig866:16259..19898 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig866.17693.1mRNA_L-elsbetiae_contig866.17693.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig866 16202..20379 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig866.17693.1 ID=prot_L-elsbetiae_contig866.17693.1|Name=mRNA_L-elsbetiae_contig866.17693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=802bp
MQVSEMMDVSHAEEASPGVDGVLGHQGWAARRLVLACHRIFVDHGGGAQT
GRNTDVVSESLAHRGEIYWCLTNIDADVVSASTARTEADLADENIFHDGL
TDFYHVWTLAEAFLLDSAPLPAAPLLRWLNMYCQSGEDENKRWELDEAER
AALEADASGRSADPDSEVYWEALRSLVMSVSPRRAAEMLRSHPEGRDNAS
EVGALARQLESMPLLLPERVDGEDPGSAGGTGEAGAQVDREWFFATWTRW
QKSCKAAAKKFGVDTDVGGDRGSGDSSSEQQRHLRWLWCALCGKRSCLVE
ATQSWSELFAAVLAFEKPATRKEGVATLMRECLQEYRELPHESFLTRVIR
DASAGAVDSILRFARDHGETLALSACATHLVDLLSRAERTSVTNQQRSWF
FRRLAGHLKVFPCGGWELAAAYLGDGRDNDGGGGGGGDGDEVQLLRDLAR
GATPRSERAAHELVGWCHANSLGEETAAAVARARAAAWIGKTGFSAAAMG
TGGEGEESDAAVRVQGACGKAAYWLAKAGGGAQLERLCAEVSERLMVEVS
PRPEDAAGVEAQQAVLAEADGVLAAIPPGITGPELCFLESYKEIADLLSA
VGERGGEARLAGALAVEMLAPRDGYDGVAPTPPPRSWAHLLCLSVPALEA
TAAAAVAGAEGRAAVFRDEGQGEAVVVTAAQVHALLAKLQALAASENRVG
SVCGVVGRSATRSTLASAPAPYGFCAGGRGGGQQEEVLKIRRALATCLGA
TMMIQNAQEAAPSQAFGGRQQGLASGRRSEMSLLGRKRLPAGALMAPRVA
V*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011502Nucleoporin_Nup85