prot_L-elsbetiae_contig8628.17663.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8628.17663.1
Unique Nameprot_L-elsbetiae_contig8628.17663.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length207
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8628.17663.1 vs. uniprot
Match: D7G1L0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L0_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.640e-40
Identity = 79/117 (67.52%), Postives = 96/117 (82.05%), Query Frame = 0 
Query:    1 EGRGRGAASGGRGARKKAAFNRSRDFVLKVRGMSHRDWQGVLEALEKAEETEESFGKAERGRDGASDGKASAHAYNSCLMHLARCARWREALAVFDRMSSKGVTPNSFCLNATLDAC 117
            EGRGRGA  G +  R  AAF RSRDFV+K+RGMS  +W+GV+  LE+AE  E  FG+AE+G  G SDG+ S+HAYNSCLMHLA+C+RWREALAVF+RM ++GVTPNSFCLNATL+AC
Sbjct:   91 EGRGRGARRGTKKGR--AAFARSRDFVVKIRGMSRWNWRGVMRELEEAETAEAKFGEAEKGTTGGSDGRVSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEAC 205
[Close]
BLAST of mRNA_L-elsbetiae_contig8628.17663.1 vs. uniprot
Match: A0A6H5K890_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K890_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.360e-32
Identity = 79/164 (48.17%), Postives = 95/164 (57.93%), Query Frame = 0 
Query:    1 EGRGRGAASGGRGARKKAAFNRSRDFVLKVRGMSHRDWQGVLEALEKAEETEESFGK-----------------------------------------------AERGRDGASDGKASAHAYNSCLMHLARCARWREALAVFDRMSSKGVTPNSFCLNATLDAC 117
            EGRGRGA  G    R  AAF RSRDFV+K+RGMS  +W+GV+  LE+AE  E  FG+                                               AE+G  G SDG+ S+HAYNSCLMHLA+C+RWREALAVF+RM ++GVTPNSFCLNATL+AC
Sbjct:   23 EGRGRGARRGTNKGR--AAFARSRDFVMKIRGMSRWNWRGVMRELEEAETVEAKFGEGPRSRPSGAFFVFGSSETDVFSLVSGLARAMLVQTHTRTHTCDMTLQAEKGMTGGSDGRVSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEAC 184
[Close]
BLAST of mRNA_L-elsbetiae_contig8628.17663.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.120e-9
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 0 
Query:   17 KAAFNRSRDFVLKVRGMSHRDWQGVLEALEKAEETEESFGKAERGRDGASDGKASAHAYNSCLMHLARCARWREALAVFDRMSSKGVTPNSFCLNATLDAC 117
            +A+F R++  + K+  +   DW+ +L  L+KAE  E   G+A      A     S   Y+ C+  +A+C RW EAL +  RM+  G  PNS+C+NA LDAC
Sbjct:   73 RASF-RTKLALDKIDAVRKDDWRRILVELDKAELAE---GRATTNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDAC 169
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8628.17663.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1L0_ECTSI1.640e-4067.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K890_9PHAE1.360e-3248.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0M5_ECTSI1.120e-937.62PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 72..207
e-value: 2.1E-29
score: 104.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 72..118
e-value: 2.7E-8
score: 33.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 143..171
e-value: 3.8E-4
score: 18.4
coord: 74..106
e-value: 1.3E-6
score: 26.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 184..207
e-value: 0.22
score: 11.9
coord: 143..172
e-value: 5.9E-4
score: 19.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 141..175
score: 8.605
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 106..140
score: 7.728
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 181..207
score: 7.826
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 71..105
score: 11.104
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 69..207

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8628contigL-elsbetiae_contig8628:4524..6295 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8628.17663.1mRNA_L-elsbetiae_contig8628.17663.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8628 4522..6295 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8628.17663.1 ID=prot_L-elsbetiae_contig8628.17663.1|Name=mRNA_L-elsbetiae_contig8628.17663.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
EGRGRGAASGGRGARKKAAFNRSRDFVLKVRGMSHRDWQGVLEALEKAEE
TEESFGKAERGRDGASDGKASAHAYNSCLMHLARCARWREALAVFDRMSS
KGVTPNSFCLNATLDACAAAGEWRQCLSALERAKGSGLEVNEFSYNICIA
ACGSGGQWRRALALLREIEGAGRAGTATPPTIGTYGATVKALGMSGKWRE
SMELFRE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat