prot_L-elsbetiae_contig862.17653.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig862.17653.1
Unique Nameprot_L-elsbetiae_contig862.17653.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length341
Homology
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BLAST of mRNA_L-elsbetiae_contig862.17653.1 vs. uniprot
Match: D8LQ87_ECTSI (Contains similarity to extensin (AtExt1) from Arabidopsis thaliana n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ87_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 3.710e-57
Identity = 114/147 (77.55%), Postives = 130/147 (88.44%), Query Frame = 0 
Query:  182 ATAAPVGLAGKRARSLAAAEASNKRAREMQLRDFLMAVEEYGSTVPGEATRFHLQRGGMATSNNQIVTLMSLAADHLVANIVHESSLYRSLRLQRPGEQGREDAALGGEDGQMLTNEDLSMSLVSRGIHVSDSGVLVKRAGPAAVAA 328
            A AAP  LAGKR R   AA A NKRA+EMQLRDF++AV+EYGSTVPGEATRFHLQRGG+ TSN+QIVTLMSLAADHLVA+IVHESS++R++RLQ+  EQGRE A L GE+GQMLTNEDLS+SL+SRGI VSDSG+LVK AGPAAVAA
Sbjct:  294 AAAAPR-LAGKRPRGSMAASA-NKRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVASIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIVVSDSGLLVKAAGPAAVAA 438
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BLAST of mRNA_L-elsbetiae_contig862.17653.1 vs. uniprot
Match: A0A6H5L6F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F2_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 8.560e-57
Identity = 114/147 (77.55%), Postives = 130/147 (88.44%), Query Frame = 0 
Query:  182 ATAAPVGLAGKRARSLAAAEASNKRAREMQLRDFLMAVEEYGSTVPGEATRFHLQRGGMATSNNQIVTLMSLAADHLVANIVHESSLYRSLRLQRPGEQGREDAALGGEDGQMLTNEDLSMSLVSRGIHVSDSGVLVKRAGPAAVAA 328
            A AAP  LAGKR R   AA A NKRA+EMQLRDF++AV+EYGSTVPGEATRFHLQRGG+ TSN+QIVTLMSLAADHLVA+IVHESS++R++RLQ+  EQGRE A L GE+GQMLTNEDLS+SL+SRGI VSDSG+LVK AGPAAVAA
Sbjct:  331 AAAAPR-LAGKRPRGSMAASA-NKRAKEMQLRDFILAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVASIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIVVSDSGLLVKAAGPAAVAA 475
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BLAST of mRNA_L-elsbetiae_contig862.17653.1 vs. uniprot
Match: A0A4D9D766_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D766_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.770e-7
Identity = 35/99 (35.35%), Postives = 57/99 (57.58%), Query Frame = 0 
Query:  211 QLRDFLMAVEEYGSTVPGEATRFHLQRGGMATSNNQIVTLMSLAADHLVANIVHESSLYRSLRLQRPGEQGREDAALGGEDGQMLTNEDLSMSLVSRGI 309
            +L  FL A+++Y  T+P E T + LQ+GG+  ++++I  L+SLAA+ LV+ IVH+++ Y  ++ Q               DG +L  EDL  SL   G+
Sbjct:   87 ELAPFLNALDQYHPTIPEEVTAYFLQQGGVTVTDSKIKKLVSLAAEKLVSEIVHDTTTYSRMKDQ---------------DGDILKMEDLRESLGKYGV 170
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig862.17653.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQ87_ECTSI3.710e-5777.55Contains similarity to extensin (AtExt1) from Arab... [more]
A0A6H5L6F2_9PHAE8.560e-5777.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9D766_9STRA7.770e-735.35Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPANTHERPTHR21242TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10coord: 190..312
NoneNo IPR availablePANTHERPTHR21242:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10coord: 190..312

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig862contigL-elsbetiae_contig862:1680..5046 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig862.17653.1mRNA_L-elsbetiae_contig862.17653.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig862 1582..5780 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig862.17653.1 ID=prot_L-elsbetiae_contig862.17653.1|Name=mRNA_L-elsbetiae_contig862.17653.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=341bp
MDQLGRLTSAVPHQQQHHQQQSGVAAAPPGLGINGSVVQAAAAAAAAAGQ
HPPGLEMMAAPRNTTSHIPPPIPLAAPAPAPAPAPAPAPAAPAPAAVAWP
PTRTGVAPIGALGSLPNTGTAGYGLGVAGSGGPAAAAGVPPAAANPAGVG
GVVTAASAAGGGAAVAAMLTTGTAVGGQQEAATAAPVGLAGKRARSLAAA
EASNKRAREMQLRDFLMAVEEYGSTVPGEATRFHLQRGGMATSNNQIVTL
MSLAADHLVANIVHESSLYRSLRLQRPGEQGREDAALGGEDGQMLTNEDL
SMSLVSRGIHVSDSGVLVKRAGPAAVAADAAAADADAEEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003923TFIID_30kDa