prot_L-elsbetiae_contig8611.17647.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8611.17647.1
Unique Nameprot_L-elsbetiae_contig8611.17647.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length384
Homology
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BLAST of mRNA_L-elsbetiae_contig8611.17647.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 8.310e-5
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 0 
Query:    2 VRAVSLTWTLPLESLVLSAANDLWKWSSCLGLYGPASSASLELVVW-PQGLKQLLLE 57
            V A+ LTW LP+ESL+ +AA +LW WS CL L G   +ASL    W P+ L QL+L+
Sbjct: 1114 VWALHLTWALPMESLLRTAAIELWTWSECLELQGSLCAASLRSANWWPRRLTQLVLK 1170
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8611.17647.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4M0_9PHAE8.310e-550.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008615FNIPPFAMPF05725FNIPcoord: 148..190
e-value: 3.4E-5
score: 23.9
coord: 299..340
e-value: 6.6E-6
score: 26.2
coord: 235..277
e-value: 2.7E-5
score: 24.2
coord: 82..125
e-value: 3.2E-8
score: 33.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 13..370
e-value: 6.2E-6
score: 26.8
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 48..158
NoneNo IPR availablePANTHERPTHR32134:SF139coord: 114..311
coord: 202..360
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 114..311
coord: 202..360
NoneNo IPR availablePANTHERPTHR32134:SF139coord: 48..158
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..383
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.523
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 36..358

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8611contigL-elsbetiae_contig8611:2539..3690 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8611.17647.1mRNA_L-elsbetiae_contig8611.17647.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8611 2289..4490 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8611.17647.1 ID=prot_L-elsbetiae_contig8611.17647.1|Name=mRNA_L-elsbetiae_contig8611.17647.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=384bp
MVRAVSLTWTLPLESLVLSAANDLWKWSSCLGLYGPASSASLELVVWPQG
LKQLLLENLFNQPIVGVAWPASLQQLSFGHDFNKPIAGVVWPMSLQQLSF
GWSFNQPIAGFAWPASLQQLSFGNDFNHPIGGVVWPTSIQQLSFGERFNQ
PIAGVVWPTFLQRLKFGERFNQPIAGVVWPTFLQRLKFGGSFSQSIIGVV
WPTPLQQLSLGRNFNQSMAGVVWPASIQRLLFGSFNQPITGVVWPASLQQ
LSFESFNQPVAEVVWPASLQQLSFQNFDQPVTGVVWPASLRQLSFGNRFN
QPITGVVWPASLQQLSFGERFDQPVTGVAWPASLQELSFGICFRRSIIGI
VWPASLRSVTRVGLSNKVVGMLFVGGAISLETF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008615FNIP
IPR032675LRR_dom_sf