prot_L-elsbetiae_contig8536.17569.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8536.17569.1
Unique Nameprot_L-elsbetiae_contig8536.17569.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length374
Homology
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BLAST of mRNA_L-elsbetiae_contig8536.17569.1 vs. uniprot
Match: A0A6H5L0R8_9PHAE (ARID domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R8_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 5.220e-30
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 0 
Query:    1 QGAILADVPVVNGQLLDLVALLGAITNRGGVRRVQDQNLWDEVMRELGLLENDHQTLYTVSLHYKNFLYGFEQAHFPSHNNAGQ 84
            QG +L DVP+VNG+LLDLVALL  IT RGGVRRVQD+ LWDEV  ELGL ++  QTL+T+S+HYKNFLYGFEQ HFPS ++AGQ
Sbjct:   37 QGTVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGL-DSGQQTLFTISVHYKNFLYGFEQVHFPSRSSAGQ 119
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BLAST of mRNA_L-elsbetiae_contig8536.17569.1 vs. uniprot
Match: D8LEX2_ECTSI (ARID/BRIGHT DNA binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX2_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 5.770e-25
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0 
Query:    1 QGAILADVPVVNGQLLDLVALLGAITNRGGVRRVQDQNLWDEVMRELGLLENDHQTLYTVSLHYKNFLYGFEQA 74
            QGA+L DVP+VNG+LLDLVALL  IT RGGVRRVQD+ LWDEV  ELGL ++  QTL+T+S+HYKNFLYGFEQA
Sbjct:   37 QGAVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGL-DSGQQTLFTISVHYKNFLYGFEQA 109
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8536.17569.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0R8_9PHAE5.220e-3071.43ARID domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LEX2_ECTSI5.770e-2574.32ARID/BRIGHT DNA binding domain containing protein ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 157..177
NoneNo IPR availableCOILSCoilCoilcoord: 84..114
NoneNo IPR availablePANTHERPTHR46691FAMILY NOT NAMEDcoord: 8..121
NoneNo IPR availablePANTHERPTHR46691:SF1HIGH MOBILITY GROUP B PROTEIN 9coord: 8..121
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 6..72
e-value: 3.2E-10
score: 40.5
IPR001606ARID DNA-binding domainPROSITEPS51011ARIDcoord: 1..76
score: 18.979
IPR036431ARID DNA-binding domain superfamilyGENE3D1.10.150.60coord: 1..104
e-value: 5.5E-16
score: 60.1
IPR036431ARID DNA-binding domain superfamilySUPERFAMILY46774ARID-likecoord: 5..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8536contigL-elsbetiae_contig8536:674..7973 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8536.17569.1mRNA_L-elsbetiae_contig8536.17569.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8536 674..7973 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8536.17569.1 ID=prot_L-elsbetiae_contig8536.17569.1|Name=mRNA_L-elsbetiae_contig8536.17569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=374bp
QGAILADVPVVNGQLLDLVALLGAITNRGGVRRVQDQNLWDEVMRELGLL
ENDHQTLYTVSLHYKNFLYGFEQAHFPSHNNAGQQQQQQQQQQQQQQQRR
QQQQQQQQQQQQQQPDVRQQPSPLGQDQQAGANAQRYEQYQRQLRQRELD
QQEQVRRQRHMEQVKQAKQQQELHQRKMLLEQTQRYFLRQQQQRLQQQQQ
DMMLNQQHQQHQQPPSMLQHQQQLQQQQQQQQQQHQHQQYPRHQHHQPPY
QAQQQQQQLQHLQQQQHYQQQGGHYGGRHADSYHRGGLAYPPPHGDHDPR
SRFGRGGEAPASTPRADLPKALRSSVPREVCEAVNTLTLETYGVAEEELI
LDDEPGLLDAIFDLMDRLNPAVAQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001606ARID_dom
IPR036431ARID_dom_sf