prot_L-elsbetiae_contig8452.17460.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8452.17460.1
Unique Nameprot_L-elsbetiae_contig8452.17460.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length776
Homology
BLAST of mRNA_L-elsbetiae_contig8452.17460.1 vs. uniprot
Match: A0A6H5JAA6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA6_9PHAE)

HSP 1 Score: 424 bits (1090), Expect = 7.710e-128
Identity = 343/621 (55.23%), Postives = 397/621 (63.93%), Query Frame = 0
Query:    1 MGLGLFFCLCLSWQHP-SSGEGFWHPRLVFWQRHADSATAAVTVTSDADTFTYTPAGDQCPASPAGWLGGGGSANFGSCGAPNEDGSSTQEEPTTASSRTGKDKDKSNQSWLFSMEMNAQEYIVHNRWNALRSFHPANNAWSCPIFLYLNDPVLLTPSSSGPQATADSPLDPTSDVSGPGLSRDYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASFSGWVSTVTSPAWYVLGKVEAASSSVASVFVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGQPAGV-----------GSGAAAQVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSSQSAEGEEPRRLFLEFYGPIVGVFAALGFPAWLAELSTVVAAQLCPLLAAMPLLRLSSRGVGEGHSGESADDLVSLDFSLDLAIYAVFTLLIVTATFWRITWKACKREQSCSRLVRHLLTSAVIHVAREVLIIKVLFPVSEHLLFSYVLQWRSRFLLAWLIISLRVFTMRMLACLRVALLLATPFLPRGLLHTLETLWCHLFTYLLLGTRFFNTFFVGDGARRHPAQRAARRWVRAMRDARAGAQAA 609
            MGL LF CLC+SWQ+P ++GEG WHP L FW+++ + A   VTVT+ A +        QC A      GG G A  G C   ++     +    ++   +G      +  W FSMEMN QEYI HNRWNALRSFHP+ +AWS P+FLYL DP+LLTPS                                 XXXXXXXXXXXXXXXXXXXXXXXXXXX                A+  SGW+ST+  P  Y L KV   SS   +   +       XXXXXXXXXXXXXXXXXXXXXX           G                 G  A A+V          XXXXXXXXXXXXXXXXXXXXX          + E ++ RR+FLEF+GP+VGVFAALG PAWL+EL TVVAAQLCPLLAAMPLLRLS R   +G  G+SADDLVSLDFSLDLAIYAVFTL I TAT WR TWK+ KR++  SR ++ LLT+A  H+ REV +IKV FP+ EHLLF YVLQWR R+LLAWL +S+RVF +R+LACLRVALL+ATP +PRGLLHTLE +WCHLFTYLLLGTRFFNTFFVGDG RRH   RAARRWVRAMR+ARAGA  A
Sbjct:  631 MGLALFACLCVSWQYPGTTGEGLWHPSLAFWRKNNEPA---VTVTTSASSH-------QCVAE-----GGAGGAVSGDCSVASDGAEKGEFAGGSSEGNSG-----GSWGWPFSMEMNVQEYIAHNRWNALRSFHPSTSAWSGPLFLYLEDPILLTPSXXX------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXASKKGPRVGRGGSSGSASPPSGWLSTLAWPVTYSLRKVGVLSSPANTSEDSSGNDHGAXXXXXXXXXXXXXXXXXXXXXXDDRHECGHASFGXXXXXXXXXXXEVCWREGKEAPAEVSSPVESYSAEXXXXXXXXXXXXXXXXXXXXX-------EGAAGESQQQRRIFLEFFGPVVGVFAALGLPAWLSELLTVVAAQLCPLLAAMPLLRLSPRST-KGAGGDSADDLVSLDFSLDLAIYAVFTLAITTATLWRFTWKSFKRDRPRSRSLKLLLTAAAFHLVREVAMIKVAFPIIEHLLFHYVLQWRRRYLLAWLALSIRVFIIRLLACLRVALLMATPLVPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVGDGPRRHVGGRAARRWVRAMREARAGAARA 1193          
BLAST of mRNA_L-elsbetiae_contig8452.17460.1 vs. uniprot
Match: D7G4J4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J4_ECTSI)

HSP 1 Score: 391 bits (1004), Expect = 3.190e-119
Identity = 300/585 (51.28%), Postives = 344/585 (58.80%), Query Frame = 0
Query:   27 LVFWQRHADSATAAVTVTSDADTFTYTPAGDQCPASPAGWLGGGGSANFGSCGAPNEDGSSTQEEPTTASSRTGKDKDKSNQSWLFSMEMNAQEYIVHNRWNALRSFHPANNAWSCPIFLYLNDPVLLTPSSSGPQATADSPLDPTSDVS--GPGLSRDYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASFSGWVSTVTSPAWYVLGKVEAASSSVASVFVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGQPAGVGSGAAAQVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSSQSAEGEEPRRLFLEFYGPIVGVFAALGFPAWLAELSTVVAAQLCPLLAAMPLLRLSSRGVGEGHSGESADDLVSLDFSLDLAIYAVFTLLIVTATFWRITWKACKREQSCSRLVRHLLTSAVIHVAREVLIIKVLFPVSEHLLFSYVLQWRSRFLLAWLIISLRVFTMRMLACLRVALLLATPFLPRGLLHTLETLWCHLFTYLLLGTRFFNTFFVGDGARRHPAQRAARRWVRAMRDARAGAQAA 609
            L FW+++ + A   VTVT+ A        G QC A      GG G A  G C   N DG+   E    +S   G         WLFSMEMN QEYI HNRWNALRSFHP+ + WS P+FLYL DPVLLTPS                  S  GP +  D                                                  A+  SGW+ST+  P  Y L K+   SS   +   +  XXXXXXXXXXXXXXXXXXXXXXXX               G       G   +V                       XXXXXXXXXXXXX     + E ++ RR+FLEF+GP+VGVFAALG PAWL+EL TVVAAQLCPLLAAMPLLRLS R   +G  G+SADDLVSLDFSLDLAIYAVFTL I T T WR TWK  KR+Q  SR ++ LLT+A  H+ REV++IKV FP+ EHLLF YVLQWR R+LL WL +S+RVF +R+LACLRVALL+ATPF+PRGLLHTLE +WCHLFTYLLLGTRFFNTFFVGDG RRH   RAARRWVRAMR+ARAGA  A
Sbjct:  357 LAFWRKNNEPA---VTVTTSAS-------GHQCVAG-----GGAGDAGSGDCSVAN-DGAEKGEFAEVSSEEGGGGA----WCWLFSMEMNVQEYIAHNRWNALRSFHPSTSPWSGPLFLYLEDPVLLTPSXXXXXXXXXXXXXXXXXXSKKGPRVGGD---------------------------------------------GSSDSASPPSGWLSTLAWPVTYSLRKIGVLSSPANTSEDSSGXXXXXXXXXXXXXXXXXXXXXXXXVSDGDRHECGHASVDGXXXXC-CGEDNEVCWREGKKAPEEVSSPAERFSAESXXXXXXXXXXXXXGAEGAAGEPQQQRRIFLEFFGPVVGVFAALGLPAWLSELLTVVAAQLCPLLAAMPLLRLSPRST-KGAEGDSADDLVSLDFSLDLAIYAVFTLAIATVTLWRFTWKTFKRDQPRSRTLKLLLTAAASHLVREVVMIKVAFPIIEHLLFHYVLQWRRRYLLTWLALSIRVFIIRLLACLRVALLMATPFVPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVGDGPRRHVGGRAARRWVRAMREARAGAARA 874          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8452.17460.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAA6_9PHAE7.710e-12855.23RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G4J4_ECTSI3.190e-11951.28RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 480..499
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 402..420
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 500..518
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..377
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 396..401
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 519..544
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 440..460
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 545..775
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 461..479
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 421..439
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 378..395
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.712
NoneNo IPR availableTMHMMTMhelixcoord: 534..553
NoneNo IPR availableTMHMMTMhelixcoord: 445..464
NoneNo IPR availableTMHMMTMhelixcoord: 558..580

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8452contigL-elsbetiae_contig8452:218..6057 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8452.17460.1mRNA_L-elsbetiae_contig8452.17460.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8452 155..6704 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8452.17460.1 ID=prot_L-elsbetiae_contig8452.17460.1|Name=mRNA_L-elsbetiae_contig8452.17460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=776bp
MGLGLFFCLCLSWQHPSSGEGFWHPRLVFWQRHADSATAAVTVTSDADTF
TYTPAGDQCPASPAGWLGGGGSANFGSCGAPNEDGSSTQEEPTTASSRTG
KDKDKSNQSWLFSMEMNAQEYIVHNRWNALRSFHPANNAWSCPIFLYLND
PVLLTPSSSGPQATADSPLDPTSDVSGPGLSRDYGGGGGAGALGADARSA
DAHGVGGSSSSSSSSGIPSLSSADHEPSPSPASAASFSGWVSTVTSPAWY
VLGKVEAASSSVASVFVAAPPSSSPSFYSSSSSSANGGDDGSSGSSGSTA
ETSVASVAGGQPAGVGSGAAAQVGEEGGGGRDAEEGGDGRRRSWWRKDVY
SSAAESSSAERSSQSAEGEEPRRLFLEFYGPIVGVFAALGFPAWLAELST
VVAAQLCPLLAAMPLLRLSSRGVGEGHSGESADDLVSLDFSLDLAIYAVF
TLLIVTATFWRITWKACKREQSCSRLVRHLLTSAVIHVAREVLIIKVLFP
VSEHLLFSYVLQWRSRFLLAWLIISLRVFTMRMLACLRVALLLATPFLPR
GLLHTLETLWCHLFTYLLLGTRFFNTFFVGDGARRHPAQRAARRWVRAMR
DARAGAQAAAPPPLQQQQQQQQAGMAAAAAAALARAPVVPAAHGDHANHN
PPRGGGAAPGGPQAAGPVVPNGNNDDRPAAVPPLEQGLAQAQARGQARRR
AAAYAAQLAAQPGGGGGRGGVAGGNRAAAAAAGVPPLLARRVVVPGGGGG
APAAPPGRREAHLLALAAAGNENRR*
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