mRNA_L-elsbetiae_contig8452.17460.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8452.17460.1 vs. uniprot
Match: A0A6H5JAA6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA6_9PHAE) HSP 1 Score: 459 bits (1182), Expect = 3.530e-138 Identity = 358/642 (55.76%), Postives = 416/642 (64.80%), Query Frame = 1
Query: 1 QLDVAVPQRDVPPAVSRWYKRMGLGLFFCLCLSWQHP-SSGEGFWHPRLVFWQRHADSATAAVTVTSDADTFTYTPAGDQCPASPAGWLGGGGSANFGSCGAPNEDGSSTQEEPTTASSRTGKDKDKSNQSWLFSMEMNAQEYIVHNRWNALRSFHPANNAWSCPIFLYLNDPVLLTPSSSGPQATADSPLDPTSDVSGPGLSRDYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASFSGWVSTVTSPAWYVLGKVEAASSSVASVFVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGQPAGV-----------GSGAAAQVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSSQSAEGEEPRRLFLEFYGPIVGVFAALGFPAWLAELSTVVAAQLCPLLAAMPLLRLSSRGVGEGHSGESADDLVSLDFSLDLAIYAVFTLLIVTATFWRITWKACKREQSCSRLVRHLLTSAVIHVAREVLIIKVLFPVSEHLLFSYVLQWRSRFLLAWLIISLRVFTMRMLACLRVALLLATPFLPRGLLHTLETLWCHLFTYLLLGTRFFNTFFVGDGARRHPAQRAARRWVRAMRDARAGAQAA 1890
+LDVAVPQR++PP V+RWYK MGL LF CLC+SWQ+P ++GEG WHP L FW+++ + A VTVT+ A + QC A GG G A G C ++ + ++ +G + W FSMEMN QEYI HNRWNALRSFHP+ +AWS P+FLYL DP+LLTPS XXXXXXXXXXXXXXXXXXXXXXXXXXX A+ SGW+ST+ P Y L KV SS + + XXXXXXXXXXXXXXXXXXXXXX G G A A+V XXXXXXXXXXXXXXXXXXXXX + E ++ RR+FLEF+GP+VGVFAALG PAWL+EL TVVAAQLCPLLAAMPLLRLS R +G G+SADDLVSLDFSLDLAIYAVFTL I TAT WR TWK+ KR++ SR ++ LLT+A H+ REV +IKV FP+ EHLLF YVLQWR R+LLAWL +S+RVF +R+LACLRVALL+ATP +PRGLLHTLE +WCHLFTYLLLGTRFFNTFFVGDG RRH RAARRWVRAMR+ARAGA A
Sbjct: 610 RLDVAVPQREIPPTVARWYKYMGLALFACLCVSWQYPGTTGEGLWHPSLAFWRKNNEPA---VTVTTSASSH-------QCVAE-----GGAGGAVSGDCSVASDGAEKGEFAGGSSEGNSG-----GSWGWPFSMEMNVQEYIAHNRWNALRSFHPSTSAWSGPLFLYLEDPILLTPSXXX------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXASKKGPRVGRGGSSGSASPPSGWLSTLAWPVTYSLRKVGVLSSPANTSEDSSGNDHGAXXXXXXXXXXXXXXXXXXXXXXDDRHECGHASFGXXXXXXXXXXXEVCWREGKEAPAEVSSPVESYSAEXXXXXXXXXXXXXXXXXXXXX-------EGAAGESQQQRRIFLEFFGPVVGVFAALGLPAWLSELLTVVAAQLCPLLAAMPLLRLSPRST-KGAGGDSADDLVSLDFSLDLAIYAVFTLAITTATLWRFTWKSFKRDRPRSRSLKLLLTAAAFHLVREVAMIKVAFPIIEHLLFHYVLQWRRRYLLAWLALSIRVFIIRLLACLRVALLMATPLVPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVGDGPRRHVGGRAARRWVRAMREARAGAARA 1193
BLAST of mRNA_L-elsbetiae_contig8452.17460.1 vs. uniprot
Match: D7G4J4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J4_ECTSI) HSP 1 Score: 391 bits (1004), Expect = 1.050e-116 Identity = 300/585 (51.28%), Postives = 344/585 (58.80%), Query Frame = 1
Query: 142 LVFWQRHADSATAAVTVTSDADTFTYTPAGDQCPASPAGWLGGGGSANFGSCGAPNEDGSSTQEEPTTASSRTGKDKDKSNQSWLFSMEMNAQEYIVHNRWNALRSFHPANNAWSCPIFLYLNDPVLLTPSSSGPQATADSPLDPTSDVS--GPGLSRDYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASFSGWVSTVTSPAWYVLGKVEAASSSVASVFVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGQPAGVGSGAAAQVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSSQSAEGEEPRRLFLEFYGPIVGVFAALGFPAWLAELSTVVAAQLCPLLAAMPLLRLSSRGVGEGHSGESADDLVSLDFSLDLAIYAVFTLLIVTATFWRITWKACKREQSCSRLVRHLLTSAVIHVAREVLIIKVLFPVSEHLLFSYVLQWRSRFLLAWLIISLRVFTMRMLACLRVALLLATPFLPRGLLHTLETLWCHLFTYLLLGTRFFNTFFVGDGARRHPAQRAARRWVRAMRDARAGAQAA 1890
L FW+++ + A VTVT+ A G QC A GG G A G C N DG+ E +S G WLFSMEMN QEYI HNRWNALRSFHP+ + WS P+FLYL DPVLLTPS S GP + D A+ SGW+ST+ P Y L K+ SS + + XXXXXXXXXXXXXXXXXXXXXXXX G G +V XXXXXXXXXXXXX + E ++ RR+FLEF+GP+VGVFAALG PAWL+EL TVVAAQLCPLLAAMPLLRLS R +G G+SADDLVSLDFSLDLAIYAVFTL I T T WR TWK KR+Q SR ++ LLT+A H+ REV++IKV FP+ EHLLF YVLQWR R+LL WL +S+RVF +R+LACLRVALL+ATPF+PRGLLHTLE +WCHLFTYLLLGTRFFNTFFVGDG RRH RAARRWVRAMR+ARAGA A
Sbjct: 357 LAFWRKNNEPA---VTVTTSAS-------GHQCVAG-----GGAGDAGSGDCSVAN-DGAEKGEFAEVSSEEGGGGA----WCWLFSMEMNVQEYIAHNRWNALRSFHPSTSPWSGPLFLYLEDPVLLTPSXXXXXXXXXXXXXXXXXXSKKGPRVGGD---------------------------------------------GSSDSASPPSGWLSTLAWPVTYSLRKIGVLSSPANTSEDSSGXXXXXXXXXXXXXXXXXXXXXXXXVSDGDRHECGHASVDGXXXXC-CGEDNEVCWREGKKAPEEVSSPAERFSAESXXXXXXXXXXXXXGAEGAAGEPQQQRRIFLEFFGPVVGVFAALGLPAWLSELLTVVAAQLCPLLAAMPLLRLSPRST-KGAEGDSADDLVSLDFSLDLAIYAVFTLAIATVTLWRFTWKTFKRDQPRSRTLKLLLTAAASHLVREVVMIKVAFPIIEHLLFHYVLQWRRRYLLTWLALSIRVFIIRLLACLRVALLMATPFVPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVGDGPRRHVGGRAARRWVRAMREARAGAARA 874 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8452.17460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8452.17460.1 >prot_L-elsbetiae_contig8452.17460.1 ID=prot_L-elsbetiae_contig8452.17460.1|Name=mRNA_L-elsbetiae_contig8452.17460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=776bp MGLGLFFCLCLSWQHPSSGEGFWHPRLVFWQRHADSATAAVTVTSDADTFback to top mRNA from alignment at L-elsbetiae_contig8452:155..6704+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8452.17460.1 ID=mRNA_L-elsbetiae_contig8452.17460.1|Name=mRNA_L-elsbetiae_contig8452.17460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6550bp|location=Sequence derived from alignment at L-elsbetiae_contig8452:155..6704+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8452:155..6704+ >mRNA_L-elsbetiae_contig8452.17460.1 ID=mRNA_L-elsbetiae_contig8452.17460.1|Name=mRNA_L-elsbetiae_contig8452.17460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4656bp|location=Sequence derived from alignment at L-elsbetiae_contig8452:155..6704+ (Laminarionema elsbetiae ELsaHSoW15)back to top |