prot_L-elsbetiae_contig8433.17444.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8433.17444.1
Unique Nameprot_L-elsbetiae_contig8433.17444.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length431
Homology
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BLAST of mRNA_L-elsbetiae_contig8433.17444.1 vs. uniprot
Match: D7FQD2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD2_ECTSI)

HSP 1 Score: 398 bits (1022), Expect = 5.060e-133
Identity = 270/439 (61.50%), Postives = 320/439 (72.89%), Query Frame = 0 
Query:    1 MSFVRSDGWETAAARRRARGGSFE---VAVNASDRQGNVSIRGC--GSESEAEVPTLCTLCLRSLESSLGNGLATFDVQDLPFGLGQLIYEFVSSNGSRMAHMEVLKALAPVLRRHVYSLDLSKAKVLGDSALLKLAAGCDSALLQLDLSSCCFVTDTGLLAALHRCPCLRDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGITHSGVAYISFLPALEQLCLARCNVGDDAVVALAAGPCRQSLKRLDLSGTATTGKCLASLRSLGQLVYLALSSTDSCVSARSVAALGRDLRLPACLPEAPKTRGRCNRSLLSGSKWSERQLRCVPGKRRADGAAPVRS----SWPNSAPAICCERRGGSSKAMRLLGAASRLNSSPLXXXXXXXXXXXXXXXFSADDLVKVGFQEGGVGDGGRQMLLSLVQGIVRLWPAVPSR 430
            M+FVRS+ W +   RRRARGGSF+   V VN  DR+   +  G   GSE E E+PTL  LCLRSLESSLG GLATFD+QDLP GL + +Y+FV+S GSRMAHME+L+ALAP+LR+HV SLD S+AK++GDSALL+LA GCDS+L+QL+LSSCCF+TD  LLA L +CP ++DL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    SGVAYI++LPALEQLCLARCNV D AVVA+  G CRQSL+ LDL+ TA +    ASLR L +L                VAAL RDLRLPA LPEAPKTR R +R+LL GSKWSE QLR +P KR A  AA        SW NS  ++ C  R G SKAMRL+GAASR++SS                   ADDLV+VGF++ G+ +GGR++LL+LVQGIVRLWPAVPSR
Sbjct:    1 MNFVRSNEWVS---RRRARGGSFDSPAVRVNIVDRRTGPASSGVRSGSEREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVSSLDFSRAKIVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGVKDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNVSDAAVVAITTGVCRQSLRWLDLTCTAISAAAAASLRDLQRLEXXXXXXXXXXXX--XVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGAPAKSWRNSIASVICYERDGPSKAMRLIGAASRVSSSSSSPC--------------ADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 420
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8433.17444.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQD2_ECTSI5.060e-13361.50Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 136..161
e-value: 270.0
score: 3.3
coord: 162..187
e-value: 4.2
score: 16.3
coord: 188..213
e-value: 9.9
score: 14.6
coord: 214..237
e-value: 43.0
score: 9.6
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 139..157
e-value: 0.44
score: 10.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 50..297
e-value: 2.6E-25
score: 91.0
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 101..277
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 101..277
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 110..275

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8433contigL-elsbetiae_contig8433:1127..3721 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8433.17444.1mRNA_L-elsbetiae_contig8433.17444.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8433 1113..4784 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8433.17444.1 ID=prot_L-elsbetiae_contig8433.17444.1|Name=mRNA_L-elsbetiae_contig8433.17444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=431bp
MSFVRSDGWETAAARRRARGGSFEVAVNASDRQGNVSIRGCGSESEAEVP
TLCTLCLRSLESSLGNGLATFDVQDLPFGLGQLIYEFVSSNGSRMAHMEV
LKALAPVLRRHVYSLDLSKAKVLGDSALLKLAAGCDSALLQLDLSSCCFV
TDTGLLAALHRCPCLRDLTLSGCAQITDQTAFHLPHRCTGLTTLNLAGLE
GITHSGVAYISFLPALEQLCLARCNVGDDAVVALAAGPCRQSLKRLDLSG
TATTGKCLASLRSLGQLVYLALSSTDSCVSARSVAALGRDLRLPACLPEA
PKTRGRCNRSLLSGSKWSERQLRCVPGKRRADGAAPVRSSWPNSAPAICC
ERRGGSSKAMRLLGAASRLNSSPLPLSLSSSSSSSSSSSFSADDLVKVGF
QEGGVGDGGRQMLLSLVQGIVRLWPAVPSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf