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Homology
BLAST of mRNA_L-elsbetiae_contig8433.17444.1 vs. uniprot
Match: D7FQD2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD2_ECTSI) HSP 1 Score: 401 bits (1030), Expect = 2.430e-129 Identity = 270/439 (61.50%), Postives = 320/439 (72.89%), Query Frame = 3
Query: 15 MSFVRSDGWETAAARRRARGGSFE---VAVNASDRQGNVSIRGC--GSESEAEVPTLCTLCLRSLESSLGNGLATFDVQDLPFGLGQLIYEFVSSNGSRMAHMEVLKALAPVLRRHVYSLDLSKAKVLGDSALLKLAAGCDSALLQLDLSSCCFVTDTGLLAALHRCPCLRDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGITHSGVAYISFLPALEQLCLARCNVGDDAVVALAAGPCRQSLKRLDLSGTATTGKCLASLRSLGQLVYLALSSTDSCVSARSVAALGRDLRLPACLPEAPKTRGRCNRSLLSGSKWSERQLRCVPGKRRADGAAPVRS----SWPNSAPAICCERRGGSSKAMRLLGAASRLNSSPLXXXXXXXXXXXXXXXFSADDLVKVGFQEGGVGDGGRQMLLSLVQGIVRLWPAVPSR 1304
M+FVRS+ W +RRRARGGSF+ V VN DR+ + G GSE E E+PTL LCLRSLESSLG GLATFD+QDLP GL + +Y+FV+S GSRMAHME+L+ALAP+LR+HV SLD S+AK++GDSALL+LA GCDS+L+QL+LSSCCF+TD LLA L +CP ++DL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SGVAYI++LPALEQLCLARCNV D AVVA+ G CRQSL+ LDL+ TA + ASLR L +L VAAL RDLRLPA LPEAPKTR R +R+LL GSKWSE QLR +P KR A AA SW NS ++ C R G SKAMRL+GAASR++SS ADDLV+VGF++ G+ +GGR++LL+LVQGIVRLWPAVPSR
Sbjct: 1 MNFVRSNEW---VSRRRARGGSFDSPAVRVNIVDRRTGPASSGVRSGSEREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVSSLDFSRAKIVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGVKDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNVSDAAVVAITTGVCRQSLRWLDLTCTAISAAAAASLRDLQRLEXXXXXXXXXXXX--XVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGAPAKSWRNSIASVICYERDGPSKAMRLIGAASRVSSSSSSPC--------------ADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 420
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 409.5 |
Seed ortholog evalue | 2e-111 |
Seed eggNOG ortholog | 2880.D7FQD2 |
KEGG ko | ko:K10268 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | modulation by host of viral RNA genome replication |
EggNOG OGs | KOG4341@1,KOG4341@2759 |
COG Functional cat. | KLT |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko04121 |
Ec32 ortholog description | Hypothetical leucine rich repeat protein |
Ec32 ortholog | Ec-01_006550.2 |
Exons | 4 |
Model size | 2370 |
Cds size | 1293 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816925.708092-UTR-L-elsbetiae_contig8433:1112..1126 | 1622816925.708092-UTR-L-elsbetiae_contig8433:1112..1126 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8433 1113..1126 + |
1691683917.2667596-UTR-L-elsbetiae_contig8433:1112..1126 | 1691683917.2667596-UTR-L-elsbetiae_contig8433:1112..1126 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8433 1113..1126 + |
1622816925.7593484-UTR-L-elsbetiae_contig8433:3721..4784 | 1622816925.7593484-UTR-L-elsbetiae_contig8433:3721..4784 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8433 3722..4784 + |
1691683917.341447-UTR-L-elsbetiae_contig8433:3721..4784 | 1691683917.341447-UTR-L-elsbetiae_contig8433:3721..4784 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8433 3722..4784 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816925.7181053-CDS-L-elsbetiae_contig8433:1126..1489 | 1622816925.7181053-CDS-L-elsbetiae_contig8433:1126..1489 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8433 1127..1489 + |
1691683917.281423-CDS-L-elsbetiae_contig8433:1126..1489 | 1691683917.281423-CDS-L-elsbetiae_contig8433:1126..1489 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8433 1127..1489 + |
1622816925.728339-CDS-L-elsbetiae_contig8433:2209..2383 | 1622816925.728339-CDS-L-elsbetiae_contig8433:2209..2383 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8433 2210..2383 + |
1691683917.2929626-CDS-L-elsbetiae_contig8433:2209..2383 | 1691683917.2929626-CDS-L-elsbetiae_contig8433:2209..2383 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8433 2210..2383 + |
1622816925.73928-CDS-L-elsbetiae_contig8433:2613..2751 | 1622816925.73928-CDS-L-elsbetiae_contig8433:2613..2751 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8433 2614..2751 + |
1691683917.3040223-CDS-L-elsbetiae_contig8433:2613..2751 | 1691683917.3040223-CDS-L-elsbetiae_contig8433:2613..2751 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8433 2614..2751 + |
1622816925.7499208-CDS-L-elsbetiae_contig8433:3103..3721 | 1622816925.7499208-CDS-L-elsbetiae_contig8433:3103..3721 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8433 3104..3721 + |
1691683917.3210223-CDS-L-elsbetiae_contig8433:3103..3721 | 1691683917.3210223-CDS-L-elsbetiae_contig8433:3103..3721 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8433 3104..3721 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8433.17444.1 >prot_L-elsbetiae_contig8433.17444.1 ID=prot_L-elsbetiae_contig8433.17444.1|Name=mRNA_L-elsbetiae_contig8433.17444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=431bp
MSFVRSDGWETAAARRRARGGSFEVAVNASDRQGNVSIRGCGSESEAEVP TLCTLCLRSLESSLGNGLATFDVQDLPFGLGQLIYEFVSSNGSRMAHMEV LKALAPVLRRHVYSLDLSKAKVLGDSALLKLAAGCDSALLQLDLSSCCFV TDTGLLAALHRCPCLRDLTLSGCAQITDQTAFHLPHRCTGLTTLNLAGLE GITHSGVAYISFLPALEQLCLARCNVGDDAVVALAAGPCRQSLKRLDLSG TATTGKCLASLRSLGQLVYLALSSTDSCVSARSVAALGRDLRLPACLPEA PKTRGRCNRSLLSGSKWSERQLRCVPGKRRADGAAPVRSSWPNSAPAICC ERRGGSSKAMRLLGAASRLNSSPLPLSLSSSSSSSSSSSFSADDLVKVGF QEGGVGDGGRQMLLSLVQGIVRLWPAVPSR* back to topmRNA from alignment at L-elsbetiae_contig8433:1113..4784+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig8433.17444.1 ID=mRNA_L-elsbetiae_contig8433.17444.1|Name=mRNA_L-elsbetiae_contig8433.17444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3672bp|location=Sequence derived from alignment at L-elsbetiae_contig8433:1113..4784+ (Laminarionema elsbetiae ELsaHSoW15) AGGACCCTCTGGTGATGAGTTTCGTGAGGTCTGATGGCTGGGAGACCGCT
GCCGCTCGACGTCGAGCGCGGGGGGGCTCTTTCGAGGTAGCAGTTAACGC
CAGCGATCGCCAAGGCAACGTGAGCATCCGCGGCTGTGGGAGTGAAAGCG
AAGCTGAGGTGCCGACGCTGTGCACCCTGTGCCTGCGCTCCCTGGAATCG
TCCCTCGGGAACGGCCTCGCGACCTTCGACGTTCAAGACCTGCCCTTCGG
CCTGGGTCAGCTGATTTATGAGTTCGTCTCGTCGAACGGCTCGCGAATGG
CCCACATGGAGGTGTTGAAAGCGCTCGCTCCCGTGTTACGACGACACGTC
TACTCCCTCGACTTAAGCAAAGCCAAGGTGAACTACCGTAGATGACACAA
GATACCACACCCCCTGGACATATTTTCAAAGCTCGATTCCTCCCCAGCAA
GAAGAGTGTCATTCGAAAAGGGGTGGCGTTGCAAAGATCTCGTCAAGGGC
TGTCTGAAAATGTGTCGTTTTGCGCTGGCACCCTCTTCGTTACGGAGTAA
TGGAGCTCTAAAAGTCGGTCCGGGGGGTGTGGTATCTTGTGTCACCTACG
GTACACAACCCCAGTCCTCGCCGGGTGGTATGTAGGTGTACCACACGTTC
CTTCTGCCGGCAGGAGAGGAATGCCACCCAAAAGGAACTTGCCATGCGCG
TTGCGTGTGGAGAGGGTGCAGACCACGCGCGACGTTCGGTCGCCCTGGAC
GCCACGCCCGGTATCGTTGTGTAATATGTAGTGCAGTTATCGCGAAGCAG
AAAATAAACAGCCTGCAGCAGTGAGTGGCGCGAAGAACTAGGTAGGTGGC
CGTGGCACGGCCCAGGAGACGAAACCACGGCGGGCATAAATACGAACGTA
CCTCCTCCGATGCGTCGGCCACGAAGCTGTAGTGGCGCTCGTTTGTGCGA
GGGCCACGCCGCCCCGGTTTCTCGCCGGGGTTGGTGATCGGATCGGTGTC
GAAGAGGAGACGACGACCCCGCTTGTGACAGCATCATTTTGGGCAGATAT
TTTACCCCCCCCCCCTTCCGTCGATGCGCGCGTACTCTTGGCGACAGGTT
CTGGGCGACTCCGCCCTCTTGAAGCTGGCCGCCGGATGCGACTCTGCGCT
GTTGCAGCTGGACCTCAGCTCTTGTTGCTTCGTCACGGATACCGGTCTCC
TCGCGGCCCTTCACAGATGCCCCTGTCTCAGAGACCTGACGCTCTCGGGG
TGTGCACAAATTACTGATCAGGTATTATTTTTTTCTTCCACCATCATGCT
GCCTAAGCTCGCTTCTTCCTTGATTCCCCCCCCCCCCCCCCTGCGCAAAA
CCCGACTCCACCCACATTTTCACCCGCTCATGATGTTCGGGCAGCAACAC
TCCCCGCTCTCCCTCGCTTATGTCCCTGTGTGCTTTTTTTTGTCCTCGTC
CTGTCCGATGGCATGTCGGTTTTGTTTCCATGCGTTTCTAAATACACGCA
GACGGCGTTTCACTTGCCACATCGATGCACGGGCCTGACCACGCTAAACC
TGGCGGGATTAGAAGGAATCACCCACAGCGGCGTGGCCTACATTTCCTTC
CTGCCCGCTCTCGAGCAGCTGTGCCTGGCGAGGTGTAACGTGAGAGAGAC
CAGCAACATATCTTTGAGACCTATTTCCTGACGTGTGACATATTGTACCA
GAGTTGAGCAGTCCGAAAAGGAGGAGGAGGAGAAGGAGGAAGAGGCATGC
GTCGGAGTGATGTGGTTTAGCCGCCGTTGTGATTTTGGCAGGTTGCTTAG
AAGCCCGTCGTGCGTAACAACATGTGCTGATTCTTGTGCCGCAAGCAAGC
GCCGTACGTACGCTTGCACAGACTCGGCAAACCCTCGACAGCAGGGCAGC
CCCCCCCCCCCCGCCCCCCGCGTTCGCTGCTCACCTCCCATGTCTCCCCG
CGCGCCCCGTCACTCTTCCCCGTGTTTTTCTATCCCCTCAGGTCGGGGAC
GACGCCGTGGTCGCCCTCGCGGCCGGCCCGTGCCGCCAAAGCCTCAAACG
GCTCGACCTTTCCGGCACGGCGACCACGGGCAAGTGCCTGGCGTCGCTCA
GGAGCCTGGGGCAGCTGGTGTACCTCGCCCTGTCATCGACGGACAGCTGC
GTCTCGGCGAGGTCGGTCGCGGCGCTCGGCCGCGACCTCCGCCTGCCTGC
CTGCCTGCCGGAGGCCCCGAAGACGCGGGGCAGGTGCAACCGCTCGCTCC
TTTCCGGGTCGAAGTGGTCCGAGCGGCAGCTGCGGTGCGTGCCGGGGAAG
AGGCGGGCCGACGGGGCGGCCCCCGTCCGGTCTTCTTGGCCGAACAGCGC
GCCCGCCATCTGCTGCGAGCGCAGGGGGGGCTCGAGCAAAGCGATGCGTC
TCCTCGGGGCGGCTAGCCGCTTGAATTCGTCGCCGTTGCCGTTGTCGTTG
TCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCCTTCTCCGCGGATGATCT
CGTCAAGGTCGGGTTTCAGGAGGGAGGGGTCGGAGACGGCGGGCGGCAGA
TGTTGCTGAGCCTGGTCCAGGGCATCGTGAGGCTCTGGCCGGCGGTCCCG
TCGCGCTGAACCCCGCCGCTACTCGCTGGGGGGGGTGCCTCGGTCGGCCC
GGCCCGGCTTGCTCGCCCTCCGGCGGACAGCGAGGAGCAGGTCCGTGAGC
CAGCTGTGCCACTGCCGGTTTTTTCCTTGTGTATTTGTGGAGATCGTTCA
TCCGCGGCACTAAATAGATGGATGTACTCGTCGATTTTATGATATGTATG
TATACATGATATTTGTAAAGTATTTTTAAATGTATGTATAATACTTCTAG
TGTTTTTCGTGAAAAGTACTCGTTGGGGGAGACTTTCGCTGCCGTGTGTT
CTGAAAACATACCGCAGCCCACTTCGTTTTTTGCACGGATTTGTAGTGTC
AATATCGGCCGGGGTAATGGGCCGCTCGCCCAGCGTTTCGTGTTGTGTCA
GCTCTCGCCTTGCTTGGGTGTGAAGGAAGGGGGGCGTGTTTTAAATAGCA
CATGTACAGAATGTTATATGCGCTCTCCTTCCGTCAAGAGCTGTCTGTGT
GCTGCAAAATTGATAGGAATATGATACTTCGAAAGCATGTGGGTGATCGT
GCCCTCGGGTTGGGGCTTTGGACCTGCAAGGTGACCACGAAGATTCAAGC
GAGAGACGATTTGTATATTTCCACAAAAACTTCGTCTCGTGTATGTGTAG
TGTGATCCCACTCTGTAAATAGCGTTACAGCAGTAGCACCAAAAGTGCTT
TCATTTTGTGGGCCATCGGGAGAGGGGGCGATCGGCGCGCGGCACGCGCA
GCAAGTACAGCTGTTTTTTTTAGGTTTTCGCGAAGGCCAGCTGTTTTACA
GCGAGTACACTTTTTTTTTTGGTTTTCGAGGGGGAAGCGGAGATGTCCAC
GTTGACATGAAATATCTTGCATGAAATTTCTTGTTCCGTGTCGCGGACTT
CGAGGTTACCACGAACACGAACGAGCGGGAGCTCGTCGATTACTTGGCTA
CCCTCGACTACATGAGTTAGAACCCTGATTCGAGCGCGCTTATTTTTTGG
AATACTTCTATGTATGCAATGCGGAAACAGAGTTGTGGAACGGAGCCAAC
CGGTGGGTTCGGCCTCGAGGTG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig8433:1113..4784+ >mRNA_L-elsbetiae_contig8433.17444.1 ID=mRNA_L-elsbetiae_contig8433.17444.1|Name=mRNA_L-elsbetiae_contig8433.17444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2586bp|location=Sequence derived from alignment at L-elsbetiae_contig8433:1113..4784+ (Laminarionema elsbetiae ELsaHSoW15) ATGAGTTTCGTGAGGTCTGATGGCTGGGAGACCGCTGCCGCTCGACGTCG AGCGCGGGGGGGCTCTTTCGAGGTAGCAGTTAACGCCAGCGATCGCCAAG GCAACGTGAGCATCCGCGGCTGTGGGAGTGAAAGCGAAGCTGAGGTGCCG ACGCTGTGCACCCTGTGCCTGCGCTCCCTGGAATCGTCCCTCGGGAACGG CCTCGCGACCTTCGACGTTCAAGACCTGCCCTTCGGCCTGGGTCAGCTGA TTTATGAGTTCGTCTCGTCGAACGGCTCGCGAATGGCCCACATGGAGGTG TTGAAAGCGCTCGCTCCCGTGTTACGACGACACGTCTACTCCCTCGACTT AAGCAAAGCCAAGATGAGTTTCGTGAGGTCTGATGGCTGGGAGACCGCTG CCGCTCGACGTCGAGCGCGGGGGGGCTCTTTCGAGGTAGCAGTTAACGCC AGCGATCGCCAAGGCAACGTGAGCATCCGCGGCTGTGGGAGTGAAAGCGA AGCTGAGGTGCCGACGCTGTGCACCCTGTGCCTGCGCTCCCTGGAATCGT CCCTCGGGAACGGCCTCGCGACCTTCGACGTTCAAGACCTGCCCTTCGGC CTGGGTCAGCTGATTTATGAGTTCGTCTCGTCGAACGGCTCGCGAATGGC CCACATGGAGGTGTTGAAAGCGCTCGCTCCCGTGTTACGACGACACGTCT ACTCCCTCGACTTAAGCAAAGCCAAGGTTCTGGGCGACTCCGCCCTCTTG AAGCTGGCCGCCGGATGCGACTCTGCGCTGTTGCAGCTGGACCTCAGCTC TTGTTGCTTCGTCACGGATACCGGTCTCCTCGCGGCCCTTCACAGATGCC CCTGTCTCAGAGACCTGACGCTCTCGGGGTGTGCACAAATTACTGATCAG GTTCTGGGCGACTCCGCCCTCTTGAAGCTGGCCGCCGGATGCGACTCTGC GCTGTTGCAGCTGGACCTCAGCTCTTGTTGCTTCGTCACGGATACCGGTC TCCTCGCGGCCCTTCACAGATGCCCCTGTCTCAGAGACCTGACGCTCTCG GGGTGTGCACAAATTACTGATCAGACGGCGTTTCACTTGCCACATCGATG CACGGGCCTGACCACGCTAAACCTGGCGGGATTAGAAGGAATCACCCACA GCGGCGTGGCCTACATTTCCTTCCTGCCCGCTCTCGAGCAGCTGTGCCTG GCGAGGTGTAACACGGCGTTTCACTTGCCACATCGATGCACGGGCCTGAC CACGCTAAACCTGGCGGGATTAGAAGGAATCACCCACAGCGGCGTGGCCT ACATTTCCTTCCTGCCCGCTCTCGAGCAGCTGTGCCTGGCGAGGTGTAAC GTCGGGGACGACGCCGTGGTCGCCCTCGCGGCCGGCCCGTGCCGCCAAAG CCTCAAACGGCTCGACCTTTCCGGCACGGCGACCACGGGCAAGTGCCTGG CGTCGCTCAGGAGCCTGGGGCAGCTGGTGTACCTCGCCCTGTCATCGACG GACAGCTGCGTCTCGGCGAGGTCGGTCGCGGCGCTCGGCCGCGACCTCCG CCTGCCTGCCTGCCTGCCGGAGGCCCCGAAGACGCGGGGCAGGTGCAACC GCTCGCTCCTTTCCGGGTCGAAGTGGTCCGAGCGGCAGCTGCGGTGCGTG CCGGGGAAGAGGCGGGCCGACGGGGCGGCCCCCGTCCGGTCTTCTTGGCC GAACAGCGCGCCCGCCATCTGCTGCGAGCGCAGGGGGGGCTCGAGCAAAG CGATGCGTCTCCTCGGGGCGGCTAGCCGCTTGAATTCGTCGCCGTTGCCG TTGTCGTTGTCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCCTTCTCCGC GGATGATCTCGTCAAGGTCGGGTTTCAGGAGGGAGGGGTCGGAGACGGCG GGCGGCAGATGTTGCTGAGCCTGGTCCAGGGCATCGTGAGGCTCTGGCCG GCGGTCCCGTCGCGCTGAGTCGGGGACGACGCCGTGGTCGCCCTCGCGGC CGGCCCGTGCCGCCAAAGCCTCAAACGGCTCGACCTTTCCGGCACGGCGA CCACGGGCAAGTGCCTGGCGTCGCTCAGGAGCCTGGGGCAGCTGGTGTAC CTCGCCCTGTCATCGACGGACAGCTGCGTCTCGGCGAGGTCGGTCGCGGC GCTCGGCCGCGACCTCCGCCTGCCTGCCTGCCTGCCGGAGGCCCCGAAGA CGCGGGGCAGGTGCAACCGCTCGCTCCTTTCCGGGTCGAAGTGGTCCGAG CGGCAGCTGCGGTGCGTGCCGGGGAAGAGGCGGGCCGACGGGGCGGCCCC CGTCCGGTCTTCTTGGCCGAACAGCGCGCCCGCCATCTGCTGCGAGCGCA GGGGGGGCTCGAGCAAAGCGATGCGTCTCCTCGGGGCGGCTAGCCGCTTG AATTCGTCGCCGTTGCCGTTGTCGTTGTCGTCGTCGTCGTCCTCCTCCTC CTCCTCCTCCTTCTCCGCGGATGATCTCGTCAAGGTCGGGTTTCAGGAGG GAGGGGTCGGAGACGGCGGGCGGCAGATGTTGCTGAGCCTGGTCCAGGGC ATCGTGAGGCTCTGGCCGGCGGTCCCGTCGCGCTGA back to top
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