prot_L-elsbetiae_contig84.17408.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig84.17408.1
Unique Nameprot_L-elsbetiae_contig84.17408.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length111
Homology
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BLAST of mRNA_L-elsbetiae_contig84.17408.1 vs. uniprot
Match: A0A6H5KQ41_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ41_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.240e-13
Identity = 61/115 (53.04%), Postives = 69/115 (60.00%), Query Frame = 0 
Query:    1 PRHVCALAASLMVSMCGLHSMVGSFLVTCPPRGLLPTAPS----PPHHRRSTAAVRGSTRRQSLVALKRGGVDGGKGGAEGSSXXXXXXXXXXXLDRGEFVRAVVGGLFAAPAIG 111
            P+ VCALAASL+ SMCGL  MVGSFLV CP  GLL + P     P  HRR     R      ++V  +  G  GG    +   XXXXXXXXX  +DR  FVRAVVGG  AAPAIG
Sbjct:   19 PKLVCALAASLVASMCGLPCMVGSFLVPCPRHGLLSSTPXXXRLPSSHRR-----RPGRNVVAVVLNRERGDRGGDAEEDXXXXXXXXXXXXSGMDRAGFVRAVVGGFIAAPAIG 128
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig84.17408.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQ41_9PHAE3.240e-1353.04Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..111
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.584
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig84contigL-elsbetiae_contig84:40638..40970 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig84.17408.1mRNA_L-elsbetiae_contig84.17408.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig84 40638..40972 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig84.17408.1 ID=prot_L-elsbetiae_contig84.17408.1|Name=mRNA_L-elsbetiae_contig84.17408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
PRHVCALAASLMVSMCGLHSMVGSFLVTCPPRGLLPTAPSPPHHRRSTAA
VRGSTRRQSLVALKRGGVDGGKGGAEGSSGGDGGRGGGEGLDRGEFVRAV
VGGLFAAPAIG
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