mRNA_L-elsbetiae_contig84.17408.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig84.17408.1
Unique NamemRNA_L-elsbetiae_contig84.17408.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig84.17408.1 vs. uniprot
Match: A0A6H5KQ41_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ41_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.240e-13
Identity = 61/115 (53.04%), Postives = 69/115 (60.00%), Query Frame = 1 
Query:    1 PRHVCALAASLMVSMCGLHSMVGSFLVTCPPRGLLPTAPS----PPHHRRSTAAVRGSTRRQSLVALKRGGVDGGKGGAEGSSXXXXXXXXXXXLDRGEFVRAVVGGLFAAPAIG 333
            P+ VCALAASL+ SMCGL  MVGSFLV CP  GLL + P     P  HRR     R      ++V  +  G  GG    +   XXXXXXXXX  +DR  FVRAVVGG  AAPAIG
Sbjct:   19 PKLVCALAASLVASMCGLPCMVGSFLVPCPRHGLLSSTPXXXRLPSSHRR-----RPGRNVVAVVLNRERGDRGGDAEEDXXXXXXXXXXXXSGMDRAGFVRAVVGGFIAAPAIG 128
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig84.17408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQ41_9PHAE3.240e-1353.04Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig84contigL-elsbetiae_contig84:40638..40972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPeptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
Ec32 orthologEc-04_003010.2
Exons1
Model size337
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816921.867056-CDS-L-elsbetiae_contig84:40637..409701622816921.867056-CDS-L-elsbetiae_contig84:40637..40970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 40638..40970 +
1691683914.2725677-CDS-L-elsbetiae_contig84:40637..409701691683914.2725677-CDS-L-elsbetiae_contig84:40637..40970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 40638..40970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig84.17408.1prot_L-elsbetiae_contig84.17408.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig84 40638..40970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig84.17408.1

>prot_L-elsbetiae_contig84.17408.1 ID=prot_L-elsbetiae_contig84.17408.1|Name=mRNA_L-elsbetiae_contig84.17408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
PRHVCALAASLMVSMCGLHSMVGSFLVTCPPRGLLPTAPSPPHHRRSTAA
VRGSTRRQSLVALKRGGVDGGKGGAEGSSGGDGGRGGGEGLDRGEFVRAV
VGGLFAAPAIG
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mRNA from alignment at L-elsbetiae_contig84:40638..40972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig84.17408.1 ID=mRNA_L-elsbetiae_contig84.17408.1|Name=mRNA_L-elsbetiae_contig84.17408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=335bp|location=Sequence derived from alignment at L-elsbetiae_contig84:40638..40972+ (Laminarionema elsbetiae ELsaHSoW15)
CCCAGGCACGTCTGCGCGCTCGCCGCCTCTCTGATGGTGTCCATGTGCGG
TCTCCACAGCATGGTGGGCTCGTTCCTCGTGACCTGCCCGCCGCGAGGGC
TGCTTCCCACGGCACCGTCACCGCCGCACCATCGAAGAAGCACAGCAGCA
GTTAGAGGGAGTACGCGTCGTCAGAGCCTGGTGGCCTTGAAACGCGGAGG
AGTGGACGGAGGGAAAGGAGGGGCGGAAGGGAGCAGCGGCGGCGATGGTG
GTCGTGGTGGTGGAGAGGGGTTAGACAGGGGGGAGTTTGTTCGGGCCGTG
GTTGGGGGCCTTTTCGCGGCGCCGGCGATCGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig84:40638..40972+

>mRNA_L-elsbetiae_contig84.17408.1 ID=mRNA_L-elsbetiae_contig84.17408.1|Name=mRNA_L-elsbetiae_contig84.17408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig84:40638..40972+ (Laminarionema elsbetiae ELsaHSoW15)
CCCAGGCACGTCTGCGCGCTCGCCGCCTCTCTGATGGTGTCCATGTGCGG
TCTCCACAGCATGGTGGGCTCGTTCCTCGTGACCTGCCCGCCGCGAGGGC
TGCTTCCCACGGCACCGTCACCGCCGCACCATCGAAGAAGCACAGCAGCA
GTTAGAGGGAGTACGCGTCGTCAGAGCCTGGTGGCCTTGAAACGCGGAGG
AGTGGACGGAGGGAAAGGAGGGGCGGAAGGGAGCAGCGGCGGCGATGGTG
GTCGTGGTGGTGGAGAGGGGTTAGACAGGGGGGAGTTTGTTCGGGCCGTG
GTTGGGGGCCTTTTCGCGGCGCCGGCGATCGGGCCCAGGCACGTCTGCGC
GCTCGCCGCCTCTCTGATGGTGTCCATGTGCGGTCTCCACAGCATGGTGG
GCTCGTTCCTCGTGACCTGCCCGCCGCGAGGGCTGCTTCCCACGGCACCG
TCACCGCCGCACCATCGAAGAAGCACAGCAGCAGTTAGAGGGAGTACGCG
TCGTCAGAGCCTGGTGGCCTTGAAACGCGGAGGAGTGGACGGAGGGAAAG
GAGGGGCGGAAGGGAGCAGCGGCGGCGATGGTGGTCGTGGTGGTGGAGAG
GGGTTAGACAGGGGGGAGTTTGTTCGGGCCGTGGTTGGGGGCCTTTTCGC
GGCGCCGGCGATCGGG
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