prot_L-elsbetiae_contig8358.17359.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig8358.17359.1
Unique Name	prot_L-elsbetiae_contig8358.17359.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	129

Homology

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BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: D7FNY1_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY1_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 4.100e-57
Identity = 98/111 (88.29%), Postives = 102/111 (91.89%), Query Frame = 0

Query:    1 MQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 111
            MQS+LAPV SDIIKACLPGGQA+PFP NCFSLMVLTGAKGSMVNHSQ+SCALGQQALEGRRVPVMVSGKSLP FQAFEPSPRANGFITDRFLTGIRPQEYY     G +GL
Sbjct:  943 MQSALAPVSSDIIKACLPGGQAKPFPHNCFSLMVLTGAKGSMVNHSQVSCALGQQALEGRRVPVMVSGKSLPSFQAFEPSPRANGFITDRFLTGIRPQEYYFHCMAGREGL 1053

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BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 4.240e-57
Identity = 98/111 (88.29%), Postives = 102/111 (91.89%), Query Frame = 0

Query:    1 MQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 111
            MQS+LAPV SDIIKACLPGGQA+PFP NCFSLMVLTGAKGSMVNHSQ+SCALGQQALEGRRVPVMVSGKSLP FQAFEPSPRANGFITDRFLTGIRPQEYY     G +GL
Sbjct:  938 MQSALAPVSSDIIKACLPGGQAKPFPHNCFSLMVLTGAKGSMVNHSQVSCALGQQALEGRRVPVMVSGKSLPSFQAFEPSPRANGFITDRFLTGIRPQEYYFHCMAGREGL 1048

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BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 178 bits (452), Expect = 2.010e-49
Identity = 86/111 (77.48%), Postives = 95/111 (85.59%), Query Frame = 0

Query:    1 MQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 111
            M S L+ V SDIIKACLPGGQ +PFP N FSLMVLTGAKGSMVNHSQ+SC LGQQALEGRRVP+M+SGKSLP FQAF+ +PRANGFITDRFLTGIRPQ+YY     G +GL
Sbjct:  795 MMSELSGVASDIIKACLPGGQEKPFPSNNFSLMVLTGAKGSMVNHSQVSCGLGQQALEGRRVPIMISGKSLPSFQAFDSNPRANGFITDRFLTGIRPQDYYFHCMAGREGL 905

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BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A6G0W4H0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W4H0_9STRA)

HSP 1 Score: 171 bits (433), Expect = 7.290e-47
Identity = 83/111 (74.77%), Postives = 92/111 (82.88%), Query Frame = 0

Query:    1 MQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 111
            M  S+    SDIIKACLP GQ + FP NCFSLMVLTGAKGSMVNHSQISC LGQQALEGRRVPV+VSGKSLP F+AF+P+PRA G+ITDRFLTG+RPQEYY     G +GL
Sbjct:  887 MMGSVHGSSSDIIKACLPSGQTKAFPANCFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPVLVSGKSLPSFEAFDPNPRAGGYITDRFLTGLRPQEYYHHCMAGREGL 997

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BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A485K284_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K284_9STRA)

HSP 1 Score: 171 bits (433), Expect = 7.290e-47
Identity = 81/102 (79.41%), Postives = 89/102 (87.25%), Query Frame = 0

Query:   10 SDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 111
            SDIIKACLP GQ + FP NCFSLMVLTGAKGSMVNHSQISC LGQQALEGRRVPV+VSGKSLP F+AF+P+PRA G+ITDRFLTG+RPQEYY     G +GL
Sbjct:  904 SDIIKACLPSGQTKSFPSNCFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPVLVSGKSLPSFEAFDPNPRAGGYITDRFLTGLRPQEYYHHCMAGREGL 1005

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BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A418BIQ5_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BIQ5_9STRA)

HSP 1 Score: 168 bits (425), Expect = 8.600e-46
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 0

Query:   10 SDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 111
            SDIIKACLP GQ + FP NCFSLMVLTGAKGSMVNHSQISC LGQQALEGRRVPV+VSGKSLP F+A++P+PRA G+ITDRFLTG+RPQEYY     G +GL
Sbjct:  437 SDIIKACLPHGQNKSFPANCFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPVLVSGKSLPSFEAYDPNPRAGGYITDRFLTGLRPQEYYHHCMAGREGL 538

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BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A024TY59_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TY59_9STRA)

HSP 1 Score: 168 bits (425), Expect = 8.720e-46
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 0

Query:   10 SDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 111
            SDIIKACLP GQ + FP NCFSLMVLTGAKGSMVNHSQISC LGQQALEGRRVPV+VSGKSLP F+A++P+PRA G+ITDRFLTG+RPQEYY     G +GL
Sbjct:  913 SDIIKACLPHGQNKSFPANCFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPVLVSGKSLPSFEAYDPNPRAGGYITDRFLTGLRPQEYYHHCMAGREGL 1014

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BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: W4FVL2_9STRA (DNA-directed RNA polymerase subunit n=12 Tax=Aphanomyces TaxID=100860 RepID=W4FVL2_9STRA)

HSP 1 Score: 168 bits (425), Expect = 8.720e-46
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 0

Query:   10 SDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 111
            SDIIKACLP GQ + FP NCFSLMVLTGAKGSMVNHSQISC LGQQALEGRRVPV+VSGKSLP F+A++P+PRA G+ITDRFLTG+RPQEYY     G +GL
Sbjct:  918 SDIIKACLPHGQNKSFPANCFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPVLVSGKSLPSFEAYDPNPRAGGYITDRFLTGLRPQEYYHHCMAGREGL 1019

[Close]

BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A1V9ZTF5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTF5_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.190e-45
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 0

Query:   10 SDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 111
            S+IIK+CLP GQ + FP NCFSLMVLTGAKGSMVNHSQISC LGQQALEGRRVPV+VSGKSLP F+AF+PSPRA G+ITDRFLTG+RPQEYY     G +GL
Sbjct:  885 SEIIKSCLPHGQNKSFPANCFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPVLVSGKSLPSFEAFDPSPRAGGYITDRFLTGLRPQEYYHHCMAGREGL 986

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BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A067CB10_SAPPC (DNA-directed RNA polymerase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CB10_SAPPC)

HSP 1 Score: 166 bits (419), Expect = 5.540e-45
Identity = 79/102 (77.45%), Postives = 88/102 (86.27%), Query Frame = 0

Query:   10 SDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 111
            S+IIK+CLP GQ + FP NCFSLMVLTGAKGSMVNHSQISC LGQQALEGRRVPV+VSGKSLP F+ F+PSPRA G+ITDRFLTG+RPQEYY     G +GL
Sbjct:  466 SEIIKSCLPHGQNKSFPANCFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPVLVSGKSLPSFEPFDPSPRAGGYITDRFLTGLRPQEYYHHCMAGREGL 567

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FNY1_ECTSI	4.100e-57	88.29	DNA-directed RNA polymerase subunit n=1 Tax=Ectoca...	[more]
A0A6H5KJ16_9PHAE	4.240e-57	88.29	DNA-directed RNA polymerase subunit n=1 Tax=Ectoca...	[more]
A0A836C8M0_9STRA	2.010e-49	77.48	DNA-directed RNA polymerase subunit n=1 Tax=Tribon...	[more]
A0A6G0W4H0_9STRA	7.290e-47	74.77	DNA-directed RNA polymerase subunit n=1 Tax=Aphano...	[more]
A0A485K284_9STRA	7.290e-47	79.41	DNA-directed RNA polymerase subunit n=1 Tax=Aphano...	[more]
A0A418BIQ5_9STRA	8.600e-46	78.43	DNA-directed RNA polymerase (Fragment) n=1 Tax=Aph...	[more]
A0A024TY59_9STRA	8.720e-46	78.43	DNA-directed RNA polymerase subunit n=1 Tax=Aphano...	[more]
W4FVL2_9STRA	8.720e-46	78.43	DNA-directed RNA polymerase subunit n=12 Tax=Aphan...	[more]
A0A1V9ZTF5_9STRA	1.190e-45	78.43	DNA-directed RNA polymerase subunit n=1 Tax=Achlya...	[more]
A0A067CB10_SAPPC	5.540e-45	77.45	DNA-directed RNA polymerase n=1 Tax=Saprolegnia pa...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 11..87 e-value: 5.2E-21 score: 74.6
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 1..96 e-value: 2.2E-44 score: 153.6
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..107
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 6..111
IPR015699	DNA-directed RNA pol I, largest subunit	PANTHER	PTHR19376:SF11	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1	coord: 1..107

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig8358	contig	L-elsbetiae_contig8358:6796..7886 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig8358.17359.1	mRNA_L-elsbetiae_contig8358.17359.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig8358 6770..7895 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig8358.17359.1 ID=prot_L-elsbetiae_contig8358.17359.1|Name=mRNA_L-elsbetiae_contig8358.17359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISC
ALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEY
YCTAWQGGKGLWTRRSRRRGRGISSAAW*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007083	RNA_pol_Rpb1_4
IPR038120	Rpb1_funnel_sf
IPR015699	DNA-dir_RNA_pol1_lsu