mRNA_L-elsbetiae_contig8358.17359.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: D7FNY1_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY1_ECTSI) HSP 1 Score: 208 bits (529), Expect = 1.280e-59 Identity = 101/114 (88.60%), Postives = 105/114 (92.11%), Query Frame = 1 Query: 1 DRHMQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 342 DRHMQS+LAPV SDIIKACLPGGQA+PFP NCFSLMVLTGAKGSMVNHSQ+SCALGQQALEGRRVPVMVSGKSLP FQAFEPSPRANGFITDRFLTGIRPQEYY G +GL Sbjct: 940 DRHMQSALAPVSSDIIKACLPGGQAKPFPHNCFSLMVLTGAKGSMVNHSQVSCALGQQALEGRRVPVMVSGKSLPSFQAFEPSPRANGFITDRFLTGIRPQEYYFHCMAGREGL 1053
BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE) HSP 1 Score: 208 bits (529), Expect = 1.340e-59 Identity = 101/114 (88.60%), Postives = 105/114 (92.11%), Query Frame = 1 Query: 1 DRHMQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 342 DRHMQS+LAPV SDIIKACLPGGQA+PFP NCFSLMVLTGAKGSMVNHSQ+SCALGQQALEGRRVPVMVSGKSLP FQAFEPSPRANGFITDRFLTGIRPQEYY G +GL Sbjct: 935 DRHMQSALAPVSSDIIKACLPGGQAKPFPHNCFSLMVLTGAKGSMVNHSQVSCALGQQALEGRRVPVMVSGKSLPSFQAFEPSPRANGFITDRFLTGIRPQEYYFHCMAGREGL 1048
BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA) HSP 1 Score: 180 bits (456), Expect = 9.010e-50 Identity = 87/114 (76.32%), Postives = 96/114 (84.21%), Query Frame = 1 Query: 1 DRHMQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 342 D M S L+ V SDIIKACLPGGQ +PFP N FSLMVLTGAKGSMVNHSQ+SC LGQQALEGRRVP+M+SGKSLP FQAF+ +PRANGFITDRFLTGIRPQ+YY G +GL Sbjct: 792 DGFMMSELSGVASDIIKACLPGGQEKPFPSNNFSLMVLTGAKGSMVNHSQVSCGLGQQALEGRRVPIMISGKSLPSFQAFDSNPRANGFITDRFLTGIRPQDYYFHCMAGREGL 905
BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A6G0W4H0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W4H0_9STRA) HSP 1 Score: 176 bits (447), Expect = 1.470e-48 Identity = 85/114 (74.56%), Postives = 94/114 (82.46%), Query Frame = 1 Query: 1 DRHMQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 342 D HM S+ SDIIKACLP GQ + FP NCFSLMVLTGAKGSMVNHSQISC LGQQALEGRRVPV+VSGKSLP F+AF+P+PRA G+ITDRFLTG+RPQEYY G +GL Sbjct: 884 DSHMMGSVHGSSSDIIKACLPSGQTKAFPANCFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPVLVSGKSLPSFEAFDPNPRAGGYITDRFLTGLRPQEYYHHCMAGREGL 997
BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A485K284_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K284_9STRA) HSP 1 Score: 174 bits (442), Expect = 6.940e-48 Identity = 84/114 (73.68%), Postives = 93/114 (81.58%), Query Frame = 1 Query: 1 DRHMQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 342 D HM + SDIIKACLP GQ + FP NCFSLMVLTGAKGSMVNHSQISC LGQQALEGRRVPV+VSGKSLP F+AF+P+PRA G+ITDRFLTG+RPQEYY G +GL Sbjct: 892 DSHMMGFVHGSSSDIIKACLPSGQTKSFPSNCFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPVLVSGKSLPSFEAFDPNPRAGGYITDRFLTGLRPQEYYHHCMAGREGL 1005
BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A418BIQ5_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BIQ5_9STRA) HSP 1 Score: 171 bits (434), Expect = 8.160e-47 Identity = 83/114 (72.81%), Postives = 93/114 (81.58%), Query Frame = 1 Query: 1 DRHMQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 342 D HM + SDIIKACLP GQ + FP NCFSLMVLTGAKGSMVNHSQISC LGQQALEGRRVPV+VSGKSLP F+A++P+PRA G+ITDRFLTG+RPQEYY G +GL Sbjct: 425 DSHMMGFVHGSSSDIIKACLPHGQNKSFPANCFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPVLVSGKSLPSFEAYDPNPRAGGYITDRFLTGLRPQEYYHHCMAGREGL 538
BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A024TY59_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TY59_9STRA) HSP 1 Score: 171 bits (434), Expect = 8.290e-47 Identity = 83/114 (72.81%), Postives = 93/114 (81.58%), Query Frame = 1 Query: 1 DRHMQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 342 D HM + SDIIKACLP GQ + FP NCFSLMVLTGAKGSMVNHSQISC LGQQALEGRRVPV+VSGKSLP F+A++P+PRA G+ITDRFLTG+RPQEYY G +GL Sbjct: 901 DSHMMGFVHGSSSDIIKACLPHGQNKSFPANCFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPVLVSGKSLPSFEAYDPNPRAGGYITDRFLTGLRPQEYYHHCMAGREGL 1014
BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: W4FVL2_9STRA (DNA-directed RNA polymerase subunit n=12 Tax=Aphanomyces TaxID=100860 RepID=W4FVL2_9STRA) HSP 1 Score: 171 bits (434), Expect = 8.290e-47 Identity = 83/114 (72.81%), Postives = 93/114 (81.58%), Query Frame = 1 Query: 1 DRHMQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 342 D HM + SDIIKACLP GQ + FP NCFSLMVLTGAKGSMVNHSQISC LGQQALEGRRVPV+VSGKSLP F+A++P+PRA G+ITDRFLTG+RPQEYY G +GL Sbjct: 906 DSHMMGFVHGSSSDIIKACLPHGQNKSFPANCFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPVLVSGKSLPSFEAYDPNPRAGGYITDRFLTGLRPQEYYHHCMAGREGL 1019
BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A1V9ZTF5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTF5_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.540e-46 Identity = 83/114 (72.81%), Postives = 93/114 (81.58%), Query Frame = 1 Query: 1 DRHMQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 342 D HM + S+IIK+CLP GQ + FP NCFSLMVLTGAKGSMVNHSQISC LGQQALEGRRVPV+VSGKSLP F+AF+PSPRA G+ITDRFLTG+RPQEYY G +GL Sbjct: 873 DSHMMGFVHGSNSEIIKSCLPHGQNKSFPANCFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPVLVSGKSLPSFEAFDPSPRAGGYITDRFLTGLRPQEYYHHCMAGREGL 986
BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Match: A0A067CB10_SAPPC (DNA-directed RNA polymerase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CB10_SAPPC) HSP 1 Score: 169 bits (427), Expect = 7.160e-46 Identity = 82/114 (71.93%), Postives = 92/114 (80.70%), Query Frame = 1 Query: 1 DRHMQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCALGQQALEGRRVPVMVSGKSLPRFQAFEPSPRANGFITDRFLTGIRPQEYYCTAWQGGKGL 342 D HM + S+IIK+CLP GQ + FP NCFSLMVLTGAKGSMVNHSQISC LGQQALEGRRVPV+VSGKSLP F+ F+PSPRA G+ITDRFLTG+RPQEYY G +GL Sbjct: 454 DSHMMGFVHGSNSEIIKSCLPHGQNKSFPANCFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPVLVSGKSLPSFEPFDPSPRAGGYITDRFLTGLRPQEYYHHCMAGREGL 567 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8358.17359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8358.17359.1 >prot_L-elsbetiae_contig8358.17359.1 ID=prot_L-elsbetiae_contig8358.17359.1|Name=mRNA_L-elsbetiae_contig8358.17359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp MQSSLAPVLSDIIKACLPGGQAEPFPQNCFSLMVLTGAKGSMVNHSQISCback to top mRNA from alignment at L-elsbetiae_contig8358:6770..7895- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8358.17359.1 ID=mRNA_L-elsbetiae_contig8358.17359.1|Name=mRNA_L-elsbetiae_contig8358.17359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1126bp|location=Sequence derived from alignment at L-elsbetiae_contig8358:6770..7895- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8358:6770..7895- >mRNA_L-elsbetiae_contig8358.17359.1 ID=mRNA_L-elsbetiae_contig8358.17359.1|Name=mRNA_L-elsbetiae_contig8358.17359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig8358:6770..7895- (Laminarionema elsbetiae ELsaHSoW15)back to top |