prot_L-elsbetiae_contig8326.17329.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8326.17329.1
Unique Nameprot_L-elsbetiae_contig8326.17329.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length178
Homology
BLAST of mRNA_L-elsbetiae_contig8326.17329.1 vs. uniprot
Match: A0A6H5KG72_9PHAE (S1-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG72_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 7.140e-71
Identity = 127/180 (70.56%), Postives = 138/180 (76.67%), Query Frame = 0
Query:    1 MRNPVLWLLGIVILSNEGEAFVGVPARSPALVARPLA---ERCCTSLSTNSTPWAMPVARFVRAHDNCQATRRPVSVARVATSTALLAKKKRGRGGGNNEGAQPRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 177
            MRN +LWLLG+  LS+ GEAFVGVP R+ ALVAR  A   E CCTSL T+S         F   HD  +  RRP ++ R A ++ALLAK         NEGA+PRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK
Sbjct:    1 MRN-ILWLLGVAALSSMGEAFVGVPVRATALVARGRASQQESCCTSLVTHSIH-----RTFAVDHDGQETARRPANMGRAAATSALLAKXXXXXXX-XNEGAKPRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 173          
BLAST of mRNA_L-elsbetiae_contig8326.17329.1 vs. uniprot
Match: D7G916_ECTSI (S1-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G916_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 5.110e-52
Identity = 98/131 (74.81%), Postives = 102/131 (77.86%), Query Frame = 0
Query:   74 VARVATSTALLAKKKRGRGGGNNEGAQPRERKEKDDVIE---------------------------VEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 177
            +ARVA ++ALLAKKK GRGGGNNEGA+PRERKEKDDVIE                           VEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK
Sbjct:    1 MARVAATSALLAKKK-GRGGGNNEGAKPRERKEKDDVIEPDSIFTSHAEKDCSAKACRMLVLLSQKVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 130          
BLAST of mRNA_L-elsbetiae_contig8326.17329.1 vs. uniprot
Match: A0A835YXL6_9STRA (S1-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXL6_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.670e-45
Identity = 76/97 (78.35%), Postives = 87/97 (89.69%), Query Frame = 0
Query:   81 TALLAKKKRGRGGGNNEGAQPRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 177
            T ++ +KK+GRGG N EGA PRE+K KDDVIEVEGVVKE LPSAMFRVE+  T +++LCTISG+IRKNFVRILVGDPV+VELSPYDLTRGRITFRYK
Sbjct:   48 TTIMHQKKKGRGGQNTEGATPREKKVKDDVIEVEGVVKESLPSAMFRVEISPTNQIILCTISGKIRKNFVRILVGDPVKVELSPYDLTRGRITFRYK 144          
BLAST of mRNA_L-elsbetiae_contig8326.17329.1 vs. uniprot
Match: A0A7S4EBF0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBF0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.030e-31
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 0
Query:  102 RERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 175
            RERK KDD IEV+GVV E LPSA FRVE+GAT +V+LCTISG+IRKNFV+ILVGD V+VELSPYDLTRGRITFR
Sbjct:   54 RERKVKDDKIEVDGVVTEALPSANFRVEIGATKQVLLCTISGKIRKNFVKILVGDSVKVELSPYDLTRGRITFR 127          
BLAST of mRNA_L-elsbetiae_contig8326.17329.1 vs. uniprot
Match: A0A6U1NIU1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NIU1_9STRA)

HSP 1 Score: 119 bits (297), Expect = 7.040e-31
Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 0
Query:  107 KDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 177
            K+DVIEVEGVVKE LP+AMFRVE+ A   V+LCTISG+IRKNFV++LVGD VRVELSPYDLTRGRITFRY+
Sbjct:   90 KEDVIEVEGVVKESLPNAMFRVELEANQNVILCTISGKIRKNFVKVLVGDSVRVELSPYDLTRGRITFRYR 160          
BLAST of mRNA_L-elsbetiae_contig8326.17329.1 vs. uniprot
Match: A0A7R9YY09_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YY09_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.720e-27
Identity = 66/107 (61.68%), Postives = 75/107 (70.09%), Query Frame = 0
Query:   72 VSVARVATSTALLAKKKRGRGGGNNEGAQPRERKEKDDVIEVEGVVKEGLPSAMFRVEV-GA--TGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 175
            V V   A  TAL  KK     G   +    RE+K+KDDVIEVEGVV E LP+AMFR  + GA  T + VL TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFR
Sbjct:   47 VDVRFAAPKTALFGKKAARAQGNERKNKTVREKKKKDDVIEVEGVVLESLPNAMFRCAIDGAPDTQEPVLATISGKIRKNFVKILVGDKVTIELSPYDLTRGRITFR 153          
BLAST of mRNA_L-elsbetiae_contig8326.17329.1 vs. uniprot
Match: A0A7S2A1G4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1G4_TRICV)

HSP 1 Score: 109 bits (272), Expect = 3.340e-27
Identity = 64/102 (62.75%), Postives = 73/102 (71.57%), Query Frame = 0
Query:   77 VATSTALLAKKKRGRGGGNNEGAQPRERKEKDDVIEVEGVVKEGLPSAMFRVEV-GA--TGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 175
            V T TAL  KK     G   +    R +K+KDDVIEVEGVV E LP+AMFR  + GA  T + VL TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFR
Sbjct:   51 VLTDTALFGKKAARAQGNERKNRTERVKKQKDDVIEVEGVVLESLPNAMFRCAIDGAPETQEPVLATISGKIRKNFVKILVGDKVTIELSPYDLTRGRITFR 152          
BLAST of mRNA_L-elsbetiae_contig8326.17329.1 vs. uniprot
Match: A0A7S4K9U1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K9U1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 6.860e-27
Identity = 68/109 (62.39%), Postives = 78/109 (71.56%), Query Frame = 0
Query:   71 PVSVARVATSTALLAKKKRGRGGGNNEGAQP-RERKEKDDVIEVEGVVKEGLPSAMFRVEV-GA--TGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 175
            PV V+ VA    +L  KK  R  GN    +P RE+K KDDVIEVEG V E LP+AMFR  + GA  T + VL TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFR
Sbjct:   46 PVHVS-VAVPNTILFGKKAARAQGNERKNRPVREKKVKDDVIEVEGTVLESLPNAMFRCAIDGAPETQEPVLATISGKIRKNFVKILVGDTVTIELSPYDLTRGRITFR 153          
BLAST of mRNA_L-elsbetiae_contig8326.17329.1 vs. uniprot
Match: A0A1Z5KC21_FISSO (Translation initiation factor IF-1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC21_FISSO)

HSP 1 Score: 107 bits (266), Expect = 1.180e-26
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 0
Query:   75 ARVATSTALLAKKKRGRGGGNNEGAQPRERKEKDDVIEVEGVVKEGLPSAMFRVEV-GA--TGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 177
            A +  S+A+  KK+    G   +    R RK KDDVIEVE VV EGLP+AMFR  + GA  + + +L TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFRY+
Sbjct:   20 ATLRQSSAIYGKKEARAQGNERKNKTERVRKTKDDVIEVEAVVVEGLPNAMFRCAIDGAPESQEPILATISGKIRKNFVKILVGDKVLIELSPYDLTRGRITFRYR 125          
BLAST of mRNA_L-elsbetiae_contig8326.17329.1 vs. uniprot
Match: A0A6U4EV19_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4EV19_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.590e-26
Identity = 64/104 (61.54%), Postives = 73/104 (70.19%), Query Frame = 0
Query:   75 ARVATSTALLAKKKRGRGGGNNEGAQPRERKEKDDVIEVEGVVKEGLPSAMFRVEV-GA--TGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 175
            A V + TAL  KK     G   +    R RK+KDDVIEVEG V E LP+AMFR  + GA  T + VL TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFR
Sbjct:   48 ATVPSKTALFGKKAARAQGNERKNKTERVRKKKDDVIEVEGTVIESLPNAMFRCAIDGAPETQEPVLATISGKIRKNFVKILVGDSVTIELSPYDLTRGRITFR 151          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8326.17329.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG72_9PHAE7.140e-7170.56S1-like domain-containing protein n=1 Tax=Ectocarp... [more]
D7G916_ECTSI5.110e-5274.81S1-like domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YXL6_9STRA2.670e-4578.35S1-like domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S4EBF0_9STRA2.030e-3181.08Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6U1NIU1_9STRA7.040e-3180.28Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9YY09_9STRA1.720e-2761.68Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2A1G4_TRICV3.340e-2762.75Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4K9U1_9STRA6.860e-2762.39Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5KC21_FISSO1.180e-2658.49Translation initiation factor IF-1 n=1 Tax=Fistuli... [more]
A0A6U4EV19_9STRA2.590e-2661.54Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 98..177
e-value: 4.8E-30
score: 105.1
NoneNo IPR availablePANTHERPTHR33370:SF1TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 80..177
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..177
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.726
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 111..175
e-value: 1.8E-21
score: 75.7
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 101..177
score: 18.452
IPR004368Translation initiation factor IF-1TIGRFAMTIGR00008TIGR00008coord: 107..176
e-value: 2.0E-26
score: 89.8
IPR004368Translation initiation factor IF-1PANTHERPTHR33370FAMILY NOT NAMEDcoord: 80..177
IPR004368Translation initiation factor IF-1HAMAPMF_00075IF_1coord: 105..177
score: 23.172
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 87..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8326contigL-elsbetiae_contig8326:4511..6142 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8326.17329.1mRNA_L-elsbetiae_contig8326.17329.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8326 4511..6142 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8326.17329.1 ID=prot_L-elsbetiae_contig8326.17329.1|Name=mRNA_L-elsbetiae_contig8326.17329.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
MRNPVLWLLGIVILSNEGEAFVGVPARSPALVARPLAERCCTSLSTNSTP
WAMPVARFVRAHDNCQATRRPVSVARVATSTALLAKKKRGRGGGNNEGAQ
PRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFV
RILVGDPVRVELSPYDLTRGRITFRYK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006196RNA-binding_domain_S1_IF1
IPR004368TIF_IF1
IPR012340NA-bd_OB-fold