prot_L-elsbetiae_contig8268.17268.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig8268.17268.1
Unique Name	prot_L-elsbetiae_contig8268.17268.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	144

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig8268.17268.1 vs. uniprot
Match: A0A6H5KI88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI88_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.360e-9
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 0

Query:   36 LEVT--VLVALSTFLGGNAAADVPPCLDLKSQHYRCNRLGAGGSINLSNCGLTDSHIDLIRPCLNTATGNNLDEIATLNLGDNQLETLPEGLFYSLTHLQTL 135
            LE+T  +L+ LST L  +A   V  CLD  +    C ++ AG +++LS+CG+TD+  D +  CL  A     + I TL L +N+L TLPEG+F SLT LQ L
Sbjct:    2 LEMTSIILLGLSTLLNTSA---VNVCLDT-TDAGNC-QIEAGETLDLSDCGITDADFDDLASCLEAAGP---EAITTLFLYENELTTLPEGIFGSLTGLQML 95

[Close]

BLAST of mRNA_L-elsbetiae_contig8268.17268.1 vs. uniprot
Match: A0A6H5KAY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY3_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.940e-5
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 0

Query:   36 LEVTVLVALSTFLGGNAAADVPPCLDLKSQHYRCNRLGAGGSINLSNCGLTDSHIDLIRPCLNTATGNNLDEIATLNLGDNQLETLPEGLFYSLTHLQ 133
            LE+T ++ L  F   + +A V  CLD      RC  + A G ++L +CG+TD+  D +  CL  A     + I  L+L  N+L TLPEG+F  LT L+
Sbjct:  118 LEMTSIILLVLFTLLDISA-VNVCLDTTDAD-RCE-IDADGQLDLYSCGITDADFDDLASCLEDAGP---EAITYLSLSQNELTTLPEGIFGGLTALE 209

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig8268.17268.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig8268.17268.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KI88_9PHAE	1.360e-9	43.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAY3_9PHAE	1.940e-5	37.76	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 56..144 e-value: 8.8E-11 score: 43.3
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 101..142 e-value: 8.3E-8 score: 31.9
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..54
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..37
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 50..54
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 55..144
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 38..49
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 77..143

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig8268	contig	L-elsbetiae_contig8268:1623..4747 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig8268.17268.1	mRNA_L-elsbetiae_contig8268.17268.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig8268 1622..4747 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig8268.17268.1 ID=prot_L-elsbetiae_contig8268.17268.1|Name=mRNA_L-elsbetiae_contig8268.17268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
AAASTAVLNVYLRFAIYRRRNPSFRRRRMRKPSPSLEVTVLVALSTFLGG
NAAADVPPCLDLKSQHYRCNRLGAGGSINLSNCGLTDSHIDLIRPCLNTA
TGNNLDEIATLNLGDNQLETLPEGLFYSLTHLQTLDLQSNHLTT

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt