mRNA_L-elsbetiae_contig8268.17268.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8268.17268.1
Unique NamemRNA_L-elsbetiae_contig8268.17268.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8268.17268.1 vs. uniprot
Match: A0A6H5KI88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI88_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.360e-9
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:  106 LEVT--VLVALSTFLGGNAAADVPPCLDLKSQHYRCNRLGAGGSINLSNCGLTDSHIDLIRPCLNTATGNNLDEIATLNLGDNQLETLPEGLFYSLTHLQTL 405
            LE+T  +L+ LST L  +A   V  CLD  +    C ++ AG +++LS+CG+TD+  D +  CL  A     + I TL L +N+L TLPEG+F SLT LQ L
Sbjct:    2 LEMTSIILLGLSTLLNTSA---VNVCLDT-TDAGNC-QIEAGETLDLSDCGITDADFDDLASCLEAAGP---EAITTLFLYENELTTLPEGIFGSLTGLQML 95
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BLAST of mRNA_L-elsbetiae_contig8268.17268.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.570e-6
Identity = 35/102 (34.31%), Postives = 56/102 (54.90%), Query Frame = 1 
Query:  112 VTVLVALSTFLGGNAAADVPPCLDLKSQHYRCNRLGAGGSINLSNCGLTDSHIDL--IRPCLNTATGNNLDEIATLNLGDNQLETLPEGLFYSLTHLQTLDL 411
            + VLV L+  L   + ++   CLD     YRC  + A G+++LS C + D  +D   +  CL+ A     + +  L+LG N L TLP+G+F  LT ++TL +
Sbjct:   46 LAVLVGLTALL---STSEANSCLDPTDTDYRCE-IDAEGTLDLSECLVADDDVDSGDLAACLDAA---GRESVIFLDLGRNDLTTLPDGVFLDLTSMETLHI 140
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BLAST of mRNA_L-elsbetiae_contig8268.17268.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.970e-6
Identity = 37/111 (33.33%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:   94 PSPSLEVTVLVALSTFLGGNA---AADVPPCLDLKSQHYRCNRLGAGGSINLSNCGLTDSHIDL--IRPCLNTATGNNLDEIATLNLGDNQLETLPEGLFYSLTHLQTLDL 411
            P   L  ++ V L+  LG  A    +    CLD     YRC  + A G+++LS C + D  +D   +  CL+ A     + +  L+LG N L TLP+G+F  LT ++TL +
Sbjct:   26 PLARLPRSMKVLLAVLLGPTALLGTSKANSCLDPTDTDYRCE-IDAEGTLDLSECLIADDDVDSGDLAACLDAA---GRESVIFLDLGRNDLTTLPDGVFLDLTAMETLHI 132
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BLAST of mRNA_L-elsbetiae_contig8268.17268.1 vs. uniprot
Match: A0A6H5KAY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY3_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.940e-5
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 1 
Query:  106 LEVTVLVALSTFLGGNAAADVPPCLDLKSQHYRCNRLGAGGSINLSNCGLTDSHIDLIRPCLNTATGNNLDEIATLNLGDNQLETLPEGLFYSLTHLQ 399
            LE+T ++ L  F   + +A V  CLD      RC  + A G ++L +CG+TD+  D +  CL  A     + I  L+L  N+L TLPEG+F  LT L+
Sbjct:  118 LEMTSIILLVLFTLLDISA-VNVCLDTTDAD-RCE-IDADGQLDLYSCGITDADFDDLASCLEDAGP---EAITYLSLSQNELTTLPEGIFGGLTALE 209
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8268.17268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KI88_9PHAE1.360e-943.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7X7_ECTSI1.570e-634.31ATP binding / amino acid binding / protein kinase/... [more]
A0A6H5KF25_9PHAE3.970e-633.33Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KAY3_9PHAE1.940e-537.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8268contigL-elsbetiae_contig8268:1622..4747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size435
Cds size432
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8268.17268.1prot_L-elsbetiae_contig8268.17268.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8268 1623..4747 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.9668999-CDS-L-elsbetiae_contig8268:1622..16501622816909.9668999-CDS-L-elsbetiae_contig8268:1622..1650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8268 1623..1650 -
1691683905.2185905-CDS-L-elsbetiae_contig8268:1622..16501691683905.2185905-CDS-L-elsbetiae_contig8268:1622..1650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8268 1623..1650 -
1622816909.9773786-CDS-L-elsbetiae_contig8268:2440..25121622816909.9773786-CDS-L-elsbetiae_contig8268:2440..2512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8268 2441..2512 -
1691683905.2280803-CDS-L-elsbetiae_contig8268:2440..25121691683905.2280803-CDS-L-elsbetiae_contig8268:2440..2512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8268 2441..2512 -
1622816909.9908464-CDS-L-elsbetiae_contig8268:2816..29151622816909.9908464-CDS-L-elsbetiae_contig8268:2816..2915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8268 2817..2915 -
1691683905.2404943-CDS-L-elsbetiae_contig8268:2816..29151691683905.2404943-CDS-L-elsbetiae_contig8268:2816..2915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8268 2817..2915 -
1622816910.001534-CDS-L-elsbetiae_contig8268:3265..33381622816910.001534-CDS-L-elsbetiae_contig8268:3265..3338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8268 3266..3338 -
1691683905.2497478-CDS-L-elsbetiae_contig8268:3265..33381691683905.2497478-CDS-L-elsbetiae_contig8268:3265..3338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8268 3266..3338 -
1622816910.011847-CDS-L-elsbetiae_contig8268:3712..37891622816910.011847-CDS-L-elsbetiae_contig8268:3712..3789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8268 3713..3789 -
1691683905.2665706-CDS-L-elsbetiae_contig8268:3712..37891691683905.2665706-CDS-L-elsbetiae_contig8268:3712..3789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8268 3713..3789 -
1622816910.0235834-CDS-L-elsbetiae_contig8268:4664..47471622816910.0235834-CDS-L-elsbetiae_contig8268:4664..4747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8268 4665..4747 -
1691683905.2755086-CDS-L-elsbetiae_contig8268:4664..47471691683905.2755086-CDS-L-elsbetiae_contig8268:4664..4747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8268 4665..4747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8268.17268.1

>prot_L-elsbetiae_contig8268.17268.1 ID=prot_L-elsbetiae_contig8268.17268.1|Name=mRNA_L-elsbetiae_contig8268.17268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
AAASTAVLNVYLRFAIYRRRNPSFRRRRMRKPSPSLEVTVLVALSTFLGG
NAAADVPPCLDLKSQHYRCNRLGAGGSINLSNCGLTDSHIDLIRPCLNTA
TGNNLDEIATLNLGDNQLETLPEGLFYSLTHLQTLDLQSNHLTT
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mRNA from alignment at L-elsbetiae_contig8268:1622..4747-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8268.17268.1 ID=mRNA_L-elsbetiae_contig8268.17268.1|Name=mRNA_L-elsbetiae_contig8268.17268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3126bp|location=Sequence derived from alignment at L-elsbetiae_contig8268:1622..4747- (Laminarionema elsbetiae ELsaHSoW15)
GCTGCTGCTTCTACTGCTGTGCTGAACGTTTATCTGAGGTTCGCAATTTA
CCGTAGGCGAAACCCAAGTTTCAGAAGAAGAAGGTGCGAGCGCCCATACA
TATTGAGACTACAACATAGACCTTTTATGTTCTAGATAGTCCAGATACAT
GGTCGCCGTTTGTGGCACCCGACTGCAAACAAACCTATCGTAATATTGTA
ATATTGTGGCAGCAGCGGTCTATCTATGTATCTCCGATAACATGCTGTGC
GATGGCGGAATGGGCAAATAATTGCACCGAAAGGTGTGCAGCGCGTGTGC
GCTCAACGTCTGAGCTGTTCGTGGTGGTTTGGCGCGTTGCAGACTTGCAG
ATGGTTGCTCGTTGCCTCATGTAAAAATACAACGAGTGCATGCATTTTAG
TTGTGTGCGCGGCTGTGCGCACTTACTTCATACGGACCGAAGATGAGCGA
CCTTGAATAGATTGTACATGTATAAACGAGTATGATCAAGTCAAATCACG
TACTACTACTGTATCTATCTAATCGAACAGCCAACAGCGTGCCGAGGAGC
CTAGTCATATGCATTAAAGCGAAGGATCCGAGCGACGAAAATACCGCACG
CCGCCCGGCACACCGCCGAGCAGCGAGGGCTTGCGCTAGTGAAACGGCTG
TTCGTTGAGCGTTTTGTCGACAGATTAATGTTTCGTTGCGAAGAGGATGC
CCACCAGCGCGGGCGCGCATATGCAGCAGAGGGGACGGCCATGAAAACAA
TATTGATGTGGACAGCAAGACTATGAAAATATGTTTCGGCGCCAAAAGGC
GTGAGAGAGATTCACCACGGCGGGCGGCGTACTATATGCACCGTTCCCTT
CCTATTTATTTCGTTGTGCTGACTACATGATGAGCTCTTCCCACCGTATT
CCCGTGTATTTCAAGCGATTCCTTCTTTATTTATTGGCAACACATCGCGC
ATCCTCAGGATGAGGAAACCCTCCCCATCACTGGAAGTGACTGTACTGGT
GGCGCTGTCGACATTCCTCGGCGGCAATGCTGCAGGTGGGTTGATAAGCC
TGTGGGTACTAGTGAACTTGTGACACCAGCCCGGCCACTCGAGTTCTTTC
TCTACACTCCCCTCTCCAGTTATCTCCACATAACAAGTCAGTCGCCCGCG
AATATTTCTAGAATGCTTTCCGATGGCTTAGTAGGGGACATGATAGTTGT
CCACAATCGGCGTGCTATGCATGGATCAGTTCGGTGGAGTTTTAGTATGC
AGAAGCTCGTACTACATAGGCAGCAAGGTTTACAAGAATGCGATATGAAA
AGTGTTGAATGATGTTCGTAACGGTTTGGCTCGTGGTGAGTCTCCTACTT
GTATGTTGATATGCTGCTCAACTGACATAATTCGCTCGCTTGTTCTTGGC
TTTCAACAGCCGATGTTCCACCATGCTTGGACCTAAAGAGCCAACACTAC
CGCTGCAATAGGCTGGGCGCCGGAGGCTCGATGTGAGGTCGATGTTGTCG
CAAGTTGCACGTACAGCCACAATCAAAACGCCGGCGAAAGTCTGATAGAT
TGGATGCAAGTCTGCCGGCAACAATTTGCAGGCCTGGCTTTTAGGTACTG
TTAGCGTGTGAAAGGTCGTTAGAGCTTGCACGCTTCCTGATTGTTTATGC
TGCCTACCATCGTGGGTTGTCTATCACTGGGGTTTTGACGAACTTAACAC
TTTTCATCTTGTTTCCGGTGTGTAGCAAGCACAACAACTCGCTCCCAGCT
TCTGTGGAAATCGGCTTGAACCCTTTACCCTCTTGAACTGACGCTCTGGA
TGCTCAACGTGCCCTCGTGTGACCTGCCACAGAAACCTGTCGAACTGCGG
CCTAACGGACAGCCATATAGACCTTATCAGGCCGTGCCTCAACACAGCTA
CGGGCAATAACCTGGACGAAATCGCGACTCTGTGAGTACAAAAGGATGCA
TCGGCTCCGCCACGTTGTCGTTCGCATCCCAGTTTTCACACCGCGGATGA
CGTTAGGAACGCGATTGAAACTTCGACATATGACGCCAGCCTTTTTTCTC
CAGGGCAATTATTGGATCCCCCACTATTACTCCAACTCTTTCATCTACAG
TACAACAGGAACTGGGGTTGCGCGGTACAATAGCATCCAAACGTTCAGCC
TTATCATCAATTGCATTGCTCAGTTGTGCTACGTTTGCCATCCCTTGCCC
GGCCCGGCATGTCTCGTTCTGCGATAACTCCGCAGTAACCTGGGGGACAA
CCAGCTGGAGACGCTGCCTGAAGGGCTATTCTATTCTCTCACCCATCTTC
AGACGCTGTAAGTTCACCTCTCCAATGCTGTTTGACTAGCTCGGGAGGAG
AATGGTTGAAACTTCGCACAGTTTGAGTTCCGCTAGACGTTGGAATCGAG
ACAAGGGAAGGCAAGGTTTCTCGATCCTTGCTTTCTTCCATTCGCGAAAC
AGCTAAGTTGTAACGCGTGGGGGTTGCTGCAAAGTGGAGCACGACAGCTC
GCGTGGAATTGTTTTTCTCTTCAGCCTATTTTCCTCTGGCGTCGAGTCAT
GATTGATCGATTGACTTTTGAAGGCGCTGCGCTCGATCGAACCCAATATT
ATTTGCCTGGTCGGGTGGTCGGGGGGCGCGTTGTGCATCTCGATGGGCCT
GCGGTGTCTGTGCCACGCTCTTCTGCGGTGTCTGTGCCACGGTCTTGGCG
GGGTAACGGGTTAGTGCAGCAGGTCTTCCCCGATATGTTTCAATTGGTTG
GAGGTACAATTAGAGGTGGAGGACAGTCAATCATACGGGACTACTGGGTC
CTTGCGTTCTCCATTCAGGCCGAACCCCGGCTCTCGGTCTTCGGAACCTA
ACACAGCGCGGAAGAGTGACCAGCAAGCCCACCCGACGGTGGTCACGTTG
CTCTCTCGGAATCGTCACGAAGTAGCCAGTCTGGTCAACTCGCCACCCGA
AGAGTGAGCGTGCCTGAGCCTGCCACCGCGGCGCTCAAACACGCCTCGCG
CTATAATAGAGACATGCCGCGTGGCATGCCGTTTCACCAGAAGGGTGATG
TTTTCTACCCCCCTCGCTCATGTCTCGTTTCCCCGACATCTTTAAAGTGA
CCTGCAGTCGAACCACCTGACGACGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8268:1622..4747-

>mRNA_L-elsbetiae_contig8268.17268.1 ID=mRNA_L-elsbetiae_contig8268.17268.1|Name=mRNA_L-elsbetiae_contig8268.17268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig8268:1622..4747- (Laminarionema elsbetiae ELsaHSoW15)
GCTGCTGCTTCTACTGCTGTGCTGAACGTTTATCTGAGGTTCGCAATTTA
CCGTAGGCGAAACCCAAGTTTCAGAAGAAGAAGGCTGCTGCTTCTACTGC
TGTGCTGAACGTTTATCTGAGGTTCGCAATTTACCGTAGGCGAAACCCAA
GTTTCAGAAGAAGAAGGATGAGGAAACCCTCCCCATCACTGGAAGTGACT
GTACTGGTGGCGCTGTCGACATTCCTCGGCGGCAATGCTGCAGGATGAGG
AAACCCTCCCCATCACTGGAAGTGACTGTACTGGTGGCGCTGTCGACATT
CCTCGGCGGCAATGCTGCAGCCGATGTTCCACCATGCTTGGACCTAAAGA
GCCAACACTACCGCTGCAATAGGCTGGGCGCCGGAGGCTCGATCCGATGT
TCCACCATGCTTGGACCTAAAGAGCCAACACTACCGCTGCAATAGGCTGG
GCGCCGGAGGCTCGATAAACCTGTCGAACTGCGGCCTAACGGACAGCCAT
ATAGACCTTATCAGGCCGTGCCTCAACACAGCTACGGGCAATAACCTGGA
CGAAATCGCGACTCTAAACCTGTCGAACTGCGGCCTAACGGACAGCCATA
TAGACCTTATCAGGCCGTGCCTCAACACAGCTACGGGCAATAACCTGGAC
GAAATCGCGACTCTTAACCTGGGGGACAACCAGCTGGAGACGCTGCCTGA
AGGGCTATTCTATTCTCTCACCCATCTTCAGACGCTTAACCTGGGGGACA
ACCAGCTGGAGACGCTGCCTGAAGGGCTATTCTATTCTCTCACCCATCTT
CAGACGCTTGACCTGCAGTCGAACCACCTGACGACGTGACCTGCAGTCGA
ACCACCTGACGACG
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