prot_L-elsbetiae_contig8263.17264.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8263.17264.1
Unique Nameprot_L-elsbetiae_contig8263.17264.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length103
Homology
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.950e-8
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0
Query:    1 MASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKV 38
            +ASRREAER+VEAGVV +NG  VQTPALNVG R IVKV
Sbjct:  124 IASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKV 161          
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 6.080e-8
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0
Query:    1 MASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKV 38
            +ASRREAER+VEAGVV +NG  VQTPALNVG R IVKV
Sbjct:  124 IASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKV 161          
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: A0A7S9LT73_9RHOB (Pseudouridine synthase n=1 Tax=Pontivivens ytuae TaxID=2789856 RepID=A0A7S9LT73_9RHOB)

HSP 1 Score: 53.1 bits (126), Expect = 5.210e-6
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 0
Query:    2 ASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGE 41
            ASRREAERL+EAG V++NG P+ +PALNV  R  ++V+GE
Sbjct:   21 ASRREAERLIEAGRVRVNGKPIDSPALNVTDRDRIEVDGE 60          
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: A0A4R7BRR5_9HYPH (Pseudouridine synthase n=2 Tax=Enterovirga rhinocerotis TaxID=1339210 RepID=A0A4R7BRR5_9HYPH)

HSP 1 Score: 53.1 bits (126), Expect = 6.590e-6
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:    1 MASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGEHWSGRTTTR 50
            +ASRR+AE ++EAG V +NG P+ +PA+NVG   ++ V+GE    R  TR
Sbjct:  118 VASRRDAEAMIEAGRVTLNGAPLTSPAINVGPNDVITVDGEALPSRERTR 167          
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: UPI000DD3FCD2 (rRNA pseudouridine synthase n=1 Tax=Oceanibium sediminis TaxID=2026339 RepID=UPI000DD3FCD2)

HSP 1 Score: 52.4 bits (124), Expect = 1.040e-5
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 0
Query:    1 MASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGEHWSGRTTTRPNCGWRTRLGASL 63
            +ASRREAER++EAG V++NG  + +PALNVG R  ++V+G+  +     R    WR    A L
Sbjct:   17 VASRREAERMIEAGRVRVNGKTIDSPALNVGPRDSIEVDGKPLAAAEPVRM---WRYHKPAGL 76          
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: UPI001653308F (rRNA pseudouridine synthase n=1 Tax=Roseobacter litoralis TaxID=42443 RepID=UPI001653308F)

HSP 1 Score: 51.2 bits (121), Expect = 2.690e-5
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 0
Query:    1 MASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGE 41
            +ASRREAER++EAG V++NGT + +PALNV L+  + V+G+
Sbjct:   23 IASRREAERMIEAGRVRVNGTQISSPALNVTLQDAIIVDGK 63          
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: A0A2E9YV95_9RHOB (Pseudouridine synthase n=4 Tax=root TaxID=1 RepID=A0A2E9YV95_9RHOB)

HSP 1 Score: 50.8 bits (120), Expect = 3.960e-5
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 0
Query:    1 MASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEG 40
            +ASRREAER++EAG V++NGT + +PALNV  R  + V+G
Sbjct:   29 IASRREAERMIEAGRVRVNGTQIDSPALNVTARDEISVDG 68          
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: A0A5B8FU82_9RHOB (Pseudouridine synthase n=1 Tax=Paroceanicella profunda TaxID=2579971 RepID=A0A5B8FU82_9RHOB)

HSP 1 Score: 50.8 bits (120), Expect = 4.100e-5
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    1 MASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGEHWSGRTTTR 50
            +ASRREAER++EAG V++NG  + +PALNV  R  ++V+G+  +    TR
Sbjct:   20 LASRREAERMIEAGRVRVNGKEIDSPALNVTARDRIEVDGKPVAAAEPTR 69          
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: UPI000FD84D24 (pseudouridine synthase n=1 Tax=Solirhodobacter olei TaxID=2493082 RepID=UPI000FD84D24)

HSP 1 Score: 50.8 bits (120), Expect = 4.110e-5
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:    1 MASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGEHWSGRTTTR 50
            +ASRREAERL+EAG+V +NG  + +PALNV  R  + VEG+    R   R
Sbjct:   20 VASRREAERLIEAGLVTVNGKVIDSPALNVTARDRIMVEGKPLPQREPAR 69          
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: UPI000E1BE2F3 (pseudouridine synthase n=1 Tax=Jannaschia formosa TaxID=2259592 RepID=UPI000E1BE2F3)

HSP 1 Score: 50.8 bits (120), Expect = 4.270e-5
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 0
Query:    1 MASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEG 40
            +ASRR+AER++E G V++NG PV +PALN+G R  V V+G
Sbjct:   20 LASRRDAERMIEEGRVQVNGKPVDSPALNIGPRDRVTVDG 59          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5J9J6_9PHAE4.950e-878.95S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LDE8_ECTSI6.080e-878.95RNA pseudouridylate synthase domain-containing pro... [more]
A0A7S9LT73_9RHOB5.210e-662.50Pseudouridine synthase n=1 Tax=Pontivivens ytuae T... [more]
A0A4R7BRR5_9HYPH6.590e-648.00Pseudouridine synthase n=2 Tax=Enterovirga rhinoce... [more]
UPI000DD3FCD21.040e-544.44rRNA pseudouridine synthase n=1 Tax=Oceanibium sed... [more]
UPI001653308F2.690e-556.10rRNA pseudouridine synthase n=1 Tax=Roseobacter li... [more]
A0A2E9YV95_9RHOB3.960e-557.50Pseudouridine synthase n=4 Tax=root TaxID=1 RepID=... [more]
A0A5B8FU82_9RHOB4.100e-548.00Pseudouridine synthase n=1 Tax=Paroceanicella prof... [more]
UPI000FD84D244.110e-552.00pseudouridine synthase n=1 Tax=Solirhodobacter ole... [more]
UPI000E1BE2F34.270e-557.50pseudouridine synthase n=1 Tax=Jannaschia formosa ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 2..31
e-value: 2.9E-5
score: 23.7
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 1..50
e-value: 1.0E-7
score: 33.2
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 2..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8263contigL-elsbetiae_contig8263:1947..2561 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8263.17264.1mRNA_L-elsbetiae_contig8263.17264.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8263 1947..2672 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8263.17264.1 ID=prot_L-elsbetiae_contig8263.17264.1|Name=mRNA_L-elsbetiae_contig8263.17264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGEHWSGRTTTR
PNCGWRTRLGASLSRCTIRQAGGACAKCTSCLLRKAGGFFYGARTRAAIT
SSR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR036986S4_RNA-bd_sf