mRNA_L-elsbetiae_contig8263.17264.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8263.17264.1
Unique NamemRNA_L-elsbetiae_contig8263.17264.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.400e-10
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   97 IARSGMASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKV 225
            IARSG+ASRREAER+VEAGVV +NG  VQTPALNVG R IVKV
Sbjct:  119 IARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKV 161
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BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.210e-10
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   97 IARSGMASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKV 225
            IARSG+ASRREAER+VEAGVV +NG  VQTPALNVG R IVKV
Sbjct:  119 IARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKV 161
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BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: A0A7S9LT73_9RHOB (Pseudouridine synthase n=1 Tax=Pontivivens ytuae TaxID=2789856 RepID=A0A7S9LT73_9RHOB)

HSP 1 Score: 60.1 bits (144), Expect = 5.020e-8
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   97 IARSGMASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGE 234
            IAR+G ASRREAERL+EAG V++NG P+ +PALNV  R  ++V+GE
Sbjct:   15 IARAGRASRREAERLIEAGRVRVNGKPIDSPALNVTDRDRIEVDGE 60
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BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: A0A4R7BRR5_9HYPH (Pseudouridine synthase n=2 Tax=Enterovirga rhinocerotis TaxID=1339210 RepID=A0A4R7BRR5_9HYPH)

HSP 1 Score: 60.5 bits (145), Expect = 5.910e-8
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   97 IARSGMASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGEHWSGRTTTR 261
            IAR+G+ASRR+AE ++EAG V +NG P+ +PA+NVG   ++ V+GE    R  TR
Sbjct:  113 IARAGVASRRDAEAMIEAGRVTLNGAPLTSPAINVGPNDVITVDGEALPSRERTR 167
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BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: UPI000DD3FCD2 (rRNA pseudouridine synthase n=1 Tax=Oceanibium sediminis TaxID=2026339 RepID=UPI000DD3FCD2)

HSP 1 Score: 58.9 bits (141), Expect = 1.440e-7
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:   97 IARSGMASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGEHWSGRTTTRPNCGWRTRLGASL 300
            +AR+G+ASRREAER++EAG V++NG  + +PALNVG R  ++V+G+  +     R    WR    A L
Sbjct:   12 LARAGVASRREAERMIEAGRVRVNGKTIDSPALNVGPRDSIEVDGKPLAAAEPVRM---WRYHKPAGL 76
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BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: UPI000E1BE2F3 (pseudouridine synthase n=1 Tax=Jannaschia formosa TaxID=2259592 RepID=UPI000E1BE2F3)

HSP 1 Score: 58.2 bits (139), Expect = 3.760e-7
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   97 IARSGMASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEG 231
            IAR+G+ASRR+AER++E G V++NG PV +PALN+G R  V V+G
Sbjct:   15 IARAGLASRRDAERMIEEGRVQVNGKPVDSPALNIGPRDRVTVDG 59
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BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: A0A5B8FU82_9RHOB (Pseudouridine synthase n=1 Tax=Paroceanicella profunda TaxID=2579971 RepID=A0A5B8FU82_9RHOB)

HSP 1 Score: 57.4 bits (137), Expect = 6.490e-7
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   97 IARSGMASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGEHWSGRTTTR 261
            +AR+G+ASRREAER++EAG V++NG  + +PALNV  R  ++V+G+  +    TR
Sbjct:   15 LARAGLASRREAERMIEAGRVRVNGKEIDSPALNVTARDRIEVDGKPVAAAEPTR 69
[Close]
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: UPI000FD84D24 (pseudouridine synthase n=1 Tax=Solirhodobacter olei TaxID=2493082 RepID=UPI000FD84D24)

HSP 1 Score: 57.4 bits (137), Expect = 6.500e-7
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   97 IARSGMASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGEHWSGRTTTR 261
            +AR+G+ASRREAERL+EAG+V +NG  + +PALNV  R  + VEG+    R   R
Sbjct:   15 LARAGVASRREAERLIEAGLVTVNGKVIDSPALNVTARDRIMVEGKPLPQREPAR 69
[Close]
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: UPI0013007C82 (rRNA pseudouridine synthase n=1 Tax=Oceanicella sp. SM1341 TaxID=1548889 RepID=UPI0013007C82)

HSP 1 Score: 57.0 bits (136), Expect = 7.180e-7
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   97 IARSGMASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGEHWSGRTTTR 261
            +AR+G+ASRREAER++EAG V++NG  + +PALNV  R  ++V+G+  +    TR
Sbjct:   15 LARAGLASRREAERMIEAGRVRVNGKEITSPALNVTARDRIEVDGKPIAAAEPTR 69
[Close]
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Match: UPI001653308F (rRNA pseudouridine synthase n=1 Tax=Roseobacter litoralis TaxID=42443 RepID=UPI001653308F)

HSP 1 Score: 56.6 bits (135), Expect = 9.680e-7
Identity = 25/46 (54.35%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   97 IARSGMASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGE 234
            ++R+G+ASRREAER++EAG V++NGT + +PALNV L+  + V+G+
Sbjct:   18 LSRAGIASRREAERMIEAGRVRVNGTQISSPALNVTLQDAIIVDGK 63
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8263.17264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9J6_9PHAE1.400e-1081.40S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LDE8_ECTSI2.210e-1081.40RNA pseudouridylate synthase domain-containing pro... [more]
A0A7S9LT73_9RHOB5.020e-863.04Pseudouridine synthase n=1 Tax=Pontivivens ytuae T... [more]
A0A4R7BRR5_9HYPH5.910e-850.91Pseudouridine synthase n=2 Tax=Enterovirga rhinoce... [more]
UPI000DD3FCD21.440e-745.59rRNA pseudouridine synthase n=1 Tax=Oceanibium sed... [more]
UPI000E1BE2F33.760e-760.00pseudouridine synthase n=1 Tax=Jannaschia formosa ... [more]
A0A5B8FU82_9RHOB6.490e-749.09Pseudouridine synthase n=1 Tax=Paroceanicella prof... [more]
UPI000FD84D246.500e-752.73pseudouridine synthase n=1 Tax=Solirhodobacter ole... [more]
UPI0013007C827.180e-749.09rRNA pseudouridine synthase n=1 Tax=Oceanicella sp... [more]
UPI001653308F9.680e-754.35rRNA pseudouridine synthase n=1 Tax=Roseobacter li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8263contigL-elsbetiae_contig8263:1947..2672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size421
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8263.17264.1prot_L-elsbetiae_contig8263.17264.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8263 1947..2561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.584197-CDS-L-elsbetiae_contig8263:1946..21381622816909.584197-CDS-L-elsbetiae_contig8263:1946..2138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8263 1947..2138 -
1691683904.9010215-CDS-L-elsbetiae_contig8263:1946..21381691683904.9010215-CDS-L-elsbetiae_contig8263:1946..2138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8263 1947..2138 -
1622816909.5973635-CDS-L-elsbetiae_contig8263:2444..25611622816909.5973635-CDS-L-elsbetiae_contig8263:2444..2561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8263 2445..2561 -
1691683904.9143682-CDS-L-elsbetiae_contig8263:2444..25611691683904.9143682-CDS-L-elsbetiae_contig8263:2444..2561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8263 2445..2561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.609129-UTR-L-elsbetiae_contig8263:2561..26721622816909.609129-UTR-L-elsbetiae_contig8263:2561..2672Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8263 2562..2672 -
1691683904.9264479-UTR-L-elsbetiae_contig8263:2561..26721691683904.9264479-UTR-L-elsbetiae_contig8263:2561..2672Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8263 2562..2672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8263.17264.1

>prot_L-elsbetiae_contig8263.17264.1 ID=prot_L-elsbetiae_contig8263.17264.1|Name=mRNA_L-elsbetiae_contig8263.17264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MASRREAERLVEAGVVKMNGTPVQTPALNVGLRYIVKVEGEHWSGRTTTR
PNCGWRTRLGASLSRCTIRQAGGACAKCTSCLLRKAGGFFYGARTRAAIT
SSR
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mRNA from alignment at L-elsbetiae_contig8263:1947..2672-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8263.17264.1 ID=mRNA_L-elsbetiae_contig8263.17264.1|Name=mRNA_L-elsbetiae_contig8263.17264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig8263:1947..2672- (Laminarionema elsbetiae ELsaHSoW15)
AGCACAGCGCCTCCGGCGCGGACTAAAGCGAGAGGGGCGTGGACGAGATA
CTGCGACTGCAGATGAAGGACGTTTTCAATATGCGCTTGTCTCGCTATCG
CGAGGTCCGGCATGGCTTCCCGTCGAGAAGCCGAGCGCCTGGTGGAGGCG
GGGGTGGTGAAGATGAACGGAACACCGGTGCAGACCCCGGCGCTGAACGT
GGGGCTCCGATACATCGTCAAAGTCGAGGTTAGGTTAGGCTCTTTGTTAT
CGTTTTGATTTGGGCACAGTAGGGTACGGGGCGGGCCGGCAGTGCGCCCA
GTCAGATTGGATCAAGATCGATACGTTGATCAGCGAAATGAAACCGATTT
GACTTTCAGTATAGGGTTTAAGCATCTGCGCCAGCCAGGCTGGTGAGCAA
ATCCCGCCACCTTGTTTGATTGGTTGCCTGTTGGCATGTCTGTTTGTTTG
TGTGTCGGACCGTTCCGTGCTTGTTTTTTTGGCGTGTTTTTTGTTTATCG
TTTGTTGTTCATGTCGATGTTGATGGCCGCCAAGGGAGAGCACTGGAGCG
GCCGGACGACCACACGCCCGAACTGTGGATGGCGGACACGACTAGGCGCG
AGCTTGTCACGATGCACGATTCGACAGGCTGGTGGTGCGTGCGCAAAATG
TACAAGTTGCCTATTGCGTAAAGCGGGGGGGTTCTTTTATGGCGCGCGTA
CACGTGCAGCAATTACTTCAAGCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8263:1947..2672-

>mRNA_L-elsbetiae_contig8263.17264.1 ID=mRNA_L-elsbetiae_contig8263.17264.1|Name=mRNA_L-elsbetiae_contig8263.17264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig8263:1947..2672- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTCCCGTCGAGAAGCCGAGCGCCTGGTGGAGGCGGGGGTGGTGAA
GATGAACGGAACACCGGTGCAGACCCCGGCGCTGAACGTGGGGCTCCGAT
ACATCGTCAAAGTCGAGATGGCTTCCCGTCGAGAAGCCGAGCGCCTGGTG
GAGGCGGGGGTGGTGAAGATGAACGGAACACCGGTGCAGACCCCGGCGCT
GAACGTGGGGCTCCGATACATCGTCAAAGTCGAGGGAGAGCACTGGAGCG
GCCGGACGACCACACGCCCGAACTGTGGATGGCGGACACGACTAGGCGCG
AGCTTGTCACGATGCACGATTCGACAGGCTGGTGGTGCGTGCGCAAAATG
TACAAGTTGCCTATTGCGTAAAGCGGGGGGGTTCTTTTATGGCGCGCGTA
CACGTGCAGCAATTACTTCAAGCCGGGGAGAGCACTGGAGCGGCCGGACG
ACCACACGCCCGAACTGTGGATGGCGGACACGACTAGGCGCGAGCTTGTC
ACGATGCACGATTCGACAGGCTGGTGGTGCGTGCGCAAAATGTACAAGTT
GCCTATTGCGTAAAGCGGGGGGGTTCTTTTATGGCGCGCGTACACGTGCA
GCAATTACTTCAAGCCGG
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