prot_L-elsbetiae_contig8235.17241.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8235.17241.1
Unique Nameprot_L-elsbetiae_contig8235.17241.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length212
Homology
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: D8LTZ2_ECTSI (DNA polymerase alpha subunit B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ2_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 1.550e-124
Identity = 187/216 (86.57%), Postives = 198/216 (91.67%), Query Frame = 0
Query:    6 PKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGA---------GAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREVQ 212
            PKVA+GDATIECVDG SESVDFETLFRLRLS+KL+ LFA D+DLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPE+RMF L +PKTGA          A ARQKRVHLAPNPAWLRVNEVTIGVSS+D LFDLSGDEVSAGG+GTNRLARLAGH+LQQQSFYPLFPPPAGSAAQLDMRHA RWGMP+TPDVLLVPSRLAQFAR+VQ
Sbjct:  419 PKVASGDATIECVDGGSESVDFETLFRLRLSEKLDKLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEERMFVLDVPKTGARTTSGGASAAAAARQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMPATPDVLLVPSRLAQFARQVQ 634          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A7S2F9H8_9STRA (DNA polymerase alpha subunit B n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9H8_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.400e-58
Identity = 107/211 (50.71%), Postives = 140/211 (66.35%), Query Frame = 0
Query:    4 NTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQ---LDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 211
            N PK++ GD  IE  DG  ESVD++T F  ++S  LE L+  + D   Q VLVPSL D  H++V+PQPPF DRVEGG +     +PE+++F L IP TG G G   KRVH   NPA ++VNEV +GV+S+DVL  L   E++     +NRL RLA H+L+QQSF+PLFP   G A +   +DM  + R  MP +PDVLLVPSRLA FAR++
Sbjct:   86 NHPKLSGGDVDIETEDGV-ESVDYDTFFNFKISGVLETLYEENPDTKLQVVLVPSLHDAHHDYVFPQPPFADRVEGGQQSPF--FPEEKLFTLDIPHTG-GLGEDSKRVHCVSNPAMIKVNEVVVGVTSTDVLMQLGKAEIAQRPMSSNRLGRLAEHLLKQQSFHPLFPANGGVAGEPVPVDMTKSDRLRMPMSPDVLLVPSRLATFARKL 292          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A7S3URV2_HETAK (DNA polymerase alpha subunit B n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URV2_HETAK)

HSP 1 Score: 186 bits (473), Expect = 1.540e-55
Identity = 106/208 (50.96%), Postives = 138/208 (66.35%), Query Frame = 0
Query:    6 PKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKD--LPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 211
            P+VA G   +E   G+ E+VD  TLF  R+S+KL A +A+       T+  LVPS RD FH+  +PQPPF D+VEGGV      Y  D +  L IP +   AG  +KRVH  PNPA L +NEVTIGV+S+DVLFD+S + V       NR+A+LA  ++QQQS+YP++PPP    A+LD+RHA +W MP TPDVL+VPSRLA FA+ V
Sbjct:   12 PQVAAGAPKLEAEGGAEETVDAHTLFAARVSEKLRAFYAAGGAGAQRTRVALVPSPRDAFHDAAFPQPPFADKVEGGVPNPF--YEGDTLGTLDIPFS---AGL-EKRVHCVPNPATLSLNEVTIGVTSNDVLFDISSNSVMI--NAGNRMAKLAELLIQQQSYYPVYPPPERMEAKLDLRHAAKWRMPVTPDVLVVPSRLAYFAKNV 211          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: W7TPC9_9STRA (DNA polymerase alpha subunit B n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPC9_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.040e-51
Identity = 104/208 (50.00%), Postives = 139/208 (66.83%), Query Frame = 0
Query:    4 NTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 211
            N P+VA+G+  I       ESVDFE+LF++R+S  LE L+ ++  L ++ VLVPSL DVFH+     PP  DR+ GGV      + E+R+ +LG+P      GA  KR++   NP++  VNEV +GV+++D+L  LSGDEVS      NRLARLA H+LQQQSF+PLFPPPA   AQLD+RHA    MP TPDVLL+PS+L  F ++V
Sbjct:  423 NHPQVASGETEIAGAGEEKESVDFESLFKMRVSLFLEGLYDTNPTLASRIVLVPSLNDVFHD----HPPLADRIPGGVPSPW--FEEERLGDLGLPFASEKDGA-DKRLYCLSNPSFFTVNEVAVGVTTNDILCHLSGDEVSY--NPGNRLARLAAHLLQQQSFFPLFPPPADGQAQLDLRHADHLRMPITPDVLLLPSKLTPFVKDV 621          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A836CA88_9STRA (DNA polymerase alpha subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA88_9STRA)

HSP 1 Score: 178 bits (452), Expect = 9.420e-49
Identity = 106/218 (48.62%), Postives = 130/218 (59.63%), Query Frame = 0
Query:    6 PKVANGDATIECVDG--------SSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMP---STPDVLLVPSRLAQFAREVQ 212
            P +A G A +    G        ++E VDFETLFRLR+ DKLE + A D   PTQFVL+PS RD FH+  YPQPPF D V GG  LG+G Y +D ++ LG+P        R  RV   PNPA   V       +S+D LFDLS +E + G  G  RLARLA H+LQQ+SFYPL P  AG    LD R A    +    + PDVLL+P RLAQFAR+V+
Sbjct:  436 PLIAAGAAALPVPGGXXXXXXXDAAEPVDFETLFRLRVCDKLERVLA-DPAHPTQFVLIPSTRDAFHDATYPQPPFADAVAGGAPLGIGEYADDAVYTLGLP--------RDARVACLPNPAAFAVGGAVFAATSADSLFDLSCEEAAGGAGGAPRLARLADHLLQQRSFYPLRPARAG--VPLDPRRAAALALAPRGAAPDVLLLPGRLAQFARDVR 642          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A7S2ERG3_9STRA (DNA polymerase alpha subunit B n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ERG3_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.000e-46
Identity = 93/216 (43.06%), Postives = 131/216 (60.65%), Query Frame = 0
Query:    6 PKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRV-EGGVELGVGAYPEDRMFELGIPKTGA-----GAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSA----AQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 211
            P V +G+  I+  +G+   +  E LF  R+S  LE LF  ++ L TQFVLVP L D   EFVYPQPP  DR+ +GG +L + +        LG+    +     G     KR+H  PNP  LR+NEVTIG++S+DVLF ++ DE +      +RLARL  H++QQQS+YPL+PPP  +A      LD++  ++W M   PD+L+VPS+L  FAR+V
Sbjct:  405 PLVQSGNVEIDVGEGNMSKIPHEALFAQRISALLEQLFEDEEGLGTQFVLVPHLDDAVAEFVYPQPPLSDRLPKGGKQLNLSSAEAIDFGSLGLHHIESANRQPGQSTTPKRIHCVPNPCTLRINEVTIGITSTDVLFHMNCDEANGNLPPGSRLARLTQHLIQQQSYYPLYPPPVSNARNSSVNLDLKQMEKWSMECQPDILIVPSKLTTFARKV 620          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A1Z5K576_FISSO (DNA polymerase alpha subunit B n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K576_FISSO)

HSP 1 Score: 172 bits (436), Expect = 1.200e-46
Identity = 92/208 (44.23%), Postives = 128/208 (61.54%), Query Frame = 0
Query:    4 NTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 211
            N P V +G   ++  DG+   V +ET F  ++S  LE L   +  L TQFVLVPSL D   E+VYPQPPF DRV GG++  +       +  +G+           KRVH  PNP  L++NEV IG++S+DVLF +S DE +A     +RLAR++ H+LQQ+S+YPLFPP  G    +D ++ + W MP  PD+LL+PS+LA F+R V
Sbjct:  401 NHPAVQSGQTALQDEDGNDVIVPYETFFMHKISLLLEELLTENPLLMTQFVLVPSLEDATAEWVYPQPPFQDRVSGGLQPNIPGADGITIGTMGLDYVETATELPAKRVHCVPNPCTLQINEVVIGITSTDVLFHMSADETNANLPPGSRLARISQHLLQQRSYYPLFPPAPGM--NMDYQYMEYWSMPCQPDLLLLPSKLACFSRIV 606          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A1Z5KI39_FISSO (DNA polymerase alpha subunit B n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KI39_FISSO)

HSP 1 Score: 168 bits (425), Expect = 3.370e-45
Identity = 89/206 (43.20%), Postives = 127/206 (61.65%), Query Frame = 0
Query:    6 PKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 211
            P V +G   ++  +G+   V +ET F  ++S  LE L      L TQFVLVPSL D   E+VYPQPPF DRV GG++  +       +  +G+           +RVH  PNP  L++NEV IG++S+DVLF +S DE +A     +RLAR++ H+LQQ+S+YPLFPP  G    +D ++ ++W MP  PDVL++PS+LA F+R V
Sbjct:  378 PAVQSGQTILQDEEGNDVIVPYETFFVHKISLLLEELLTEHPMLMTQFVLVPSLEDATAEWVYPQPPFQDRVPGGLQPNIPGADGITIGTMGLDYVETATELPCQRVHCVPNPCTLQINEVVIGITSTDVLFHMSADETNANLPPGSRLARISQHLLQQRSYYPLFPPAPGM--NMDYQYMEQWSMPCQPDVLILPSKLACFSRTV 581          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A7S1CYY6_CYCTE (DNA polymerase alpha subunit B n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYY6_CYCTE)

HSP 1 Score: 160 bits (404), Expect = 1.030e-44
Identity = 89/207 (43.00%), Postives = 126/207 (60.87%), Query Frame = 0
Query:    8 VANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRV-EGGVELGVGAYPEDRMFELGIP--KTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 211
            +   D  +E  DG++ +V FE  F  +++  LE LF ++ DL TQFVLVPSL D   E+VYPQ P  DR+  GG  L +          LG+   +T        +RVH   NP  L++NE+ +G++S+DV+F +S +E +   Q  +RL R+A H+LQQ+S+YPLFPP    AA LD+ H Q+W MP  PD+L+VPS+L  FAR V
Sbjct:   47 IGTQDPMLELDDGTTMNVTFEVFFAHKIAAMLEELFETNSDLQTQFVLVPSLDDAVAEWVYPQAPLSDRLPNGGSSLNLPGADGIENGTLGLEHIETMGREHGGPRRVHCVANPCTLQINEIVVGMTSTDVIFHMSCEETNENLQPGSRLGRIAQHLLQQRSYYPLFPP----AASLDLGHMQQWAMPCQPDLLIVPSKLTCFARTV 249          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: B8BYS5_THAPS (DNA polymerase alpha subunit B n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYS5_THAPS)

HSP 1 Score: 164 bits (414), Expect = 2.420e-43
Identity = 92/212 (43.40%), Postives = 126/212 (59.43%), Query Frame = 0
Query:    6 PKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIP------KTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 211
            P V  G+ TI   DG+ + V +E LF+ + +  LE ++A+D D+ TQFVLVPS  D+  E VYPQPP    V   V  GV  +  D    LG+       +       R KRVH   NP  L++NE+++GV+SSDVLF +S DE +A      RL R+A H++QQ+S+YPLFP  A   A LD+  +  W MP  PD+L+VPS+L  FAR+V
Sbjct:  457 PLVQGGEPTITDEDGNEKKVSYENLFQTKFAALLEEMYANDPDMKTQFVLVPSTEDMICESVYPQPPL---VNQEVTSGVKKF-NDEFGNLGLNYVEIAGRENIKTSERTKRVHCVSNPCTLKINELSVGVTSSDVLFHISSDETNANLPPGGRLTRIAQHLIQQRSYYPLFP--AAKGACLDLSRSDEWEMPVQPDILIVPSKLTTFARKV 662          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTZ2_ECTSI1.550e-12486.57DNA polymerase alpha subunit B n=2 Tax=Ectocarpus ... [more]
A0A7S2F9H8_9STRA1.400e-5850.71DNA polymerase alpha subunit B n=1 Tax=Florenciell... [more]
A0A7S3URV2_HETAK1.540e-5550.96DNA polymerase alpha subunit B n=1 Tax=Heterosigma... [more]
W7TPC9_9STRA1.040e-5150.00DNA polymerase alpha subunit B n=2 Tax=Monodopsida... [more]
A0A836CA88_9STRA9.420e-4948.62DNA polymerase alpha subunit B n=1 Tax=Tribonema m... [more]
A0A7S2ERG3_9STRA1.000e-4643.06DNA polymerase alpha subunit B n=2 Tax=Ditylum bri... [more]
A0A1Z5K576_FISSO1.200e-4644.23DNA polymerase alpha subunit B n=1 Tax=Fistulifera... [more]
A0A1Z5KI39_FISSO3.370e-4543.20DNA polymerase alpha subunit B n=1 Tax=Fistulifera... [more]
A0A7S1CYY6_CYCTE1.030e-4443.00DNA polymerase alpha subunit B n=1 Tax=Cyclophora ... [more]
B8BYS5_THAPS2.420e-4343.40DNA polymerase alpha subunit B n=1 Tax=Thalassiosi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.60.21.60coord: 1..144
e-value: 1.9E-14
score: 55.2
IPR007185DNA polymerase alpha/delta/epsilon, subunit BPFAMPF04042DNA_pol_E_Bcoord: 22..208
e-value: 6.2E-24
score: 84.5
IPR016722DNA polymerase alpha, subunit BPANTHERPTHR23061DNA POLYMERASE 2 ALPHA 70 KDA SUBUNITcoord: 12..212

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8235contigL-elsbetiae_contig8235:7520..8735 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8235.17241.1mRNA_L-elsbetiae_contig8235.17241.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8235 7520..8738 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8235.17241.1 ID=prot_L-elsbetiae_contig8235.17241.1|Name=mRNA_L-elsbetiae_contig8235.17241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
MSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLP
TQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPK
TGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQG
TNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLV
PSRLAQFAREVQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007185DNA_pol_a/d/e_bsu
IPR016722DNA_pol_alpha_bsu