mRNA_L-elsbetiae_contig8235.17241.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: D8LTZ2_ECTSI (DNA polymerase alpha subunit B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ2_ECTSI) HSP 1 Score: 379 bits (972), Expect = 2.030e-125 Identity = 188/222 (84.68%), Postives = 201/222 (90.54%), Query Frame = 1 Query: 1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGA---------GAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREVQ 639 F+ + PKVA+GDATIECVDG SESVDFETLFRLRLS+KL+ LFA D+DLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPE+RMF L +PKTGA A ARQKRVHLAPNPAWLRVNEVTIGVSS+D LFDLSGDEVSAGG+GTNRLARLAGH+LQQQSFYPLFPPPAGSAAQLDMRHA RWGMP+TPDVLLVPSRLAQFAR+VQ Sbjct: 413 FVDSEHPKVASGDATIECVDGGSESVDFETLFRLRLSEKLDKLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEERMFVLDVPKTGARTTSGGASAAAAARQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMPATPDVLLVPSRLAQFARQVQ 634
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A7S2F9H8_9STRA (DNA polymerase alpha subunit B n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9H8_9STRA) HSP 1 Score: 200 bits (509), Expect = 6.480e-60 Identity = 108/215 (50.23%), Postives = 142/215 (66.05%), Query Frame = 1 Query: 1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQ---LDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636 F+ N PK++ GD IE DG ESVD++T F ++S LE L+ + D Q VLVPSL D H++V+PQPPF DRVEGG + +PE+++F L IP TG G G KRVH NPA ++VNEV +GV+S+DVL L E++ +NRL RLA H+L+QQSF+PLFP G A + +DM + R MP +PDVLLVPSRLA FAR++ Sbjct: 82 FVDVNHPKLSGGDVDIETEDGV-ESVDYDTFFNFKISGVLETLYEENPDTKLQVVLVPSLHDAHHDYVFPQPPFADRVEGGQQSPF--FPEEKLFTLDIPHTG-GLGEDSKRVHCVSNPAMIKVNEVVVGVTSTDVLMQLGKAEIAQRPMSSNRLGRLAEHLLKQQSFHPLFPANGGVAGEPVPVDMTKSDRLRMPMSPDVLLVPSRLATFARKL 292
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A7S3URV2_HETAK (DNA polymerase alpha subunit B n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URV2_HETAK) HSP 1 Score: 188 bits (478), Expect = 2.810e-56 Identity = 107/214 (50.00%), Postives = 141/214 (65.89%), Query Frame = 1 Query: 1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKD--LPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636 F+ + P+VA G +E G+ E+VD TLF R+S+KL A +A+ T+ LVPS RD FH+ +PQPPF D+VEGGV Y D + L IP + AG +KRVH PNPA L +NEVTIGV+S+DVLFD+S + V NR+A+LA ++QQQS+YP++PPP A+LD+RHA +W MP TPDVL+VPSRLA FA+ V Sbjct: 6 FVDEDHPQVAAGAPKLEAEGGAEETVDAHTLFAARVSEKLRAFYAAGGAGAQRTRVALVPSPRDAFHDAAFPQPPFADKVEGGVPNPF--YEGDTLGTLDIPFS---AGL-EKRVHCVPNPATLSLNEVTIGVTSNDVLFDISSNSVMI--NAGNRMAKLAELLIQQQSYYPVYPPPERMEAKLDLRHAAKWRMPVTPDVLVVPSRLAYFAKNV 211
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: W7TPC9_9STRA (DNA polymerase alpha subunit B n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPC9_9STRA) HSP 1 Score: 189 bits (481), Expect = 5.530e-53 Identity = 105/212 (49.53%), Postives = 141/212 (66.51%), Query Frame = 1 Query: 1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636 F+ N P+VA+G+ I ESVDFE+LF++R+S LE L+ ++ L ++ VLVPSL DVFH+ PP DR+ GGV + E+R+ +LG+P GA KR++ NP++ VNEV +GV+++D+L LSGDEVS NRLARLA H+LQQQSF+PLFPPPA AQLD+RHA MP TPDVLL+PS+L F ++V Sbjct: 419 FVDANHPQVASGETEIAGAGEEKESVDFESLFKMRVSLFLEGLYDTNPTLASRIVLVPSLNDVFHD----HPPLADRIPGGVPSPW--FEEERLGDLGLPFASEKDGA-DKRLYCLSNPSFFTVNEVAVGVTTNDILCHLSGDEVSY--NPGNRLARLAAHLLQQQSFFPLFPPPADGQAQLDLRHADHLRMPITPDVLLLPSKLTPFVKDV 621
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A836CA88_9STRA (DNA polymerase alpha subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA88_9STRA) HSP 1 Score: 180 bits (457), Expect = 1.910e-49 Identity = 107/224 (47.77%), Postives = 132/224 (58.93%), Query Frame = 1 Query: 1 FMSTNTPKVANGDATIECVDG--------SSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMP---STPDVLLVPSRLAQFAREVQ 639 F+ P +A G A + G ++E VDFETLFRLR+ DKLE + A D PTQFVL+PS RD FH+ YPQPPF D V GG LG+G Y +D ++ LG+P R RV PNPA V +S+D LFDLS +E + G G RLARLA H+LQQ+SFYPL P AG LD R A + + PDVLL+P RLAQFAR+V+ Sbjct: 430 FVDAEHPLIAAGAAALPVPGGXXXXXXXDAAEPVDFETLFRLRVCDKLERVLA-DPAHPTQFVLIPSTRDAFHDATYPQPPFADAVAGGAPLGIGEYADDAVYTLGLP--------RDARVACLPNPAAFAVGGAVFAATSADSLFDLSCEEAAGGAGGAPRLARLADHLLQQRSFYPLRPARAG--VPLDPRRAAALALAPRGAAPDVLLLPGRLAQFARDVR 642
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A1Z5K576_FISSO (DNA polymerase alpha subunit B n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K576_FISSO) HSP 1 Score: 175 bits (444), Expect = 9.080e-48 Identity = 93/212 (43.87%), Postives = 130/212 (61.32%), Query Frame = 1 Query: 1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636 F+ N P V +G ++ DG+ V +ET F ++S LE L + L TQFVLVPSL D E+VYPQPPF DRV GG++ + + +G+ KRVH PNP L++NEV IG++S+DVLF +S DE +A +RLAR++ H+LQQ+S+YPLFPP G +D ++ + W MP PD+LL+PS+LA F+R V Sbjct: 397 FVDMNHPAVQSGQTALQDEDGNDVIVPYETFFMHKISLLLEELLTENPLLMTQFVLVPSLEDATAEWVYPQPPFQDRVSGGLQPNIPGADGITIGTMGLDYVETATELPAKRVHCVPNPCTLQINEVVIGITSTDVLFHMSADETNANLPPGSRLARISQHLLQQRSYYPLFPPAPGM--NMDYQYMEYWSMPCQPDLLLLPSKLACFSRIV 606
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A7S2ERG3_9STRA (DNA polymerase alpha subunit B n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ERG3_9STRA) HSP 1 Score: 174 bits (441), Expect = 2.810e-47 Identity = 94/222 (42.34%), Postives = 133/222 (59.91%), Query Frame = 1 Query: 1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRV-EGGVELGVGAYPEDRMFELGIPKTGA-----GAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSA----AQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636 F+ P V +G+ I+ +G+ + E LF R+S LE LF ++ L TQFVLVP L D EFVYPQPP DR+ +GG +L + + LG+ + G KR+H PNP LR+NEVTIG++S+DVLF ++ DE + +RLARL H++QQQS+YPL+PPP +A LD++ ++W M PD+L+VPS+L FAR+V Sbjct: 399 FVDIKHPLVQSGNVEIDVGEGNMSKIPHEALFAQRISALLEQLFEDEEGLGTQFVLVPHLDDAVAEFVYPQPPLSDRLPKGGKQLNLSSAEAIDFGSLGLHHIESANRQPGQSTTPKRIHCVPNPCTLRINEVTIGITSTDVLFHMNCDEANGNLPPGSRLARLTQHLIQQQSYYPLYPPPVSNARNSSVNLDLKQMEKWSMECQPDILIVPSKLTTFARKV 620
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A1Z5KI39_FISSO (DNA polymerase alpha subunit B n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KI39_FISSO) HSP 1 Score: 170 bits (430), Expect = 6.780e-46 Identity = 90/212 (42.45%), Postives = 130/212 (61.32%), Query Frame = 1 Query: 1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636 F+ + P V +G ++ +G+ V +ET F ++S LE L L TQFVLVPSL D E+VYPQPPF DRV GG++ + + +G+ +RVH PNP L++NEV IG++S+DVLF +S DE +A +RLAR++ H+LQQ+S+YPLFPP G +D ++ ++W MP PDVL++PS+LA F+R V Sbjct: 372 FVDLDHPAVQSGQTILQDEEGNDVIVPYETFFVHKISLLLEELLTEHPMLMTQFVLVPSLEDATAEWVYPQPPFQDRVPGGLQPNIPGADGITIGTMGLDYVETATELPCQRVHCVPNPCTLQINEVVIGITSTDVLFHMSADETNANLPPGSRLARISQHLLQQRSYYPLFPPAPGM--NMDYQYMEQWSMPCQPDVLILPSKLACFSRTV 581
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A7S1CYY6_CYCTE (DNA polymerase alpha subunit B n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYY6_CYCTE) HSP 1 Score: 160 bits (404), Expect = 1.060e-44 Identity = 89/207 (43.00%), Postives = 126/207 (60.87%), Query Frame = 1 Query: 25 VANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRV-EGGVELGVGAYPEDRMFELGIP--KTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636 + D +E DG++ +V FE F +++ LE LF ++ DL TQFVLVPSL D E+VYPQ P DR+ GG L + LG+ +T +RVH NP L++NE+ +G++S+DV+F +S +E + Q +RL R+A H+LQQ+S+YPLFPP AA LD+ H Q+W MP PD+L+VPS+L FAR V Sbjct: 47 IGTQDPMLELDDGTTMNVTFEVFFAHKIAAMLEELFETNSDLQTQFVLVPSLDDAVAEWVYPQAPLSDRLPNGGSSLNLPGADGIENGTLGLEHIETMGREHGGPRRVHCVANPCTLQINEIVVGMTSTDVIFHMSCEETNENLQPGSRLGRIAQHLLQQRSYYPLFPP----AASLDLGHMQQWAMPCQPDLLIVPSKLTCFARTV 249
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: B8BYS5_THAPS (DNA polymerase alpha subunit B n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYS5_THAPS) HSP 1 Score: 165 bits (418), Expect = 6.920e-44 Identity = 93/218 (42.66%), Postives = 128/218 (58.72%), Query Frame = 1 Query: 1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIP------KTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636 F+ P V G+ TI DG+ + V +E LF+ + + LE ++A+D D+ TQFVLVPS D+ E VYPQPP V V GV + D LG+ + R KRVH NP L++NE+++GV+SSDVLF +S DE +A RL R+A H++QQ+S+YPLFP A A LD+ + W MP PD+L+VPS+L FAR+V Sbjct: 451 FVDGRQPLVQGGEPTITDEDGNEKKVSYENLFQTKFAALLEEMYANDPDMKTQFVLVPSTEDMICESVYPQPPL---VNQEVTSGVKKF-NDEFGNLGLNYVEIAGRENIKTSERTKRVHCVSNPCTLKINELSVGVTSSDVLFHISSDETNANLPPGGRLTRIAQHLIQQRSYYPLFP--AAKGACLDLSRSDEWEMPVQPDILIVPSKLTTFARKV 662 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8235.17241.1 >prot_L-elsbetiae_contig8235.17241.1 ID=prot_L-elsbetiae_contig8235.17241.1|Name=mRNA_L-elsbetiae_contig8235.17241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp MSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPback to top mRNA from alignment at L-elsbetiae_contig8235:7520..8738- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8235.17241.1 ID=mRNA_L-elsbetiae_contig8235.17241.1|Name=mRNA_L-elsbetiae_contig8235.17241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1219bp|location=Sequence derived from alignment at L-elsbetiae_contig8235:7520..8738- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8235:7520..8738- >mRNA_L-elsbetiae_contig8235.17241.1 ID=mRNA_L-elsbetiae_contig8235.17241.1|Name=mRNA_L-elsbetiae_contig8235.17241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1272bp|location=Sequence derived from alignment at L-elsbetiae_contig8235:7520..8738- (Laminarionema elsbetiae ELsaHSoW15)back to top |