mRNA_L-elsbetiae_contig8235.17241.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8235.17241.1
Unique NamemRNA_L-elsbetiae_contig8235.17241.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: D8LTZ2_ECTSI (DNA polymerase alpha subunit B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ2_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 2.030e-125
Identity = 188/222 (84.68%), Postives = 201/222 (90.54%), Query Frame = 1
Query:    1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGA---------GAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREVQ 639
            F+ +  PKVA+GDATIECVDG SESVDFETLFRLRLS+KL+ LFA D+DLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPE+RMF L +PKTGA          A ARQKRVHLAPNPAWLRVNEVTIGVSS+D LFDLSGDEVSAGG+GTNRLARLAGH+LQQQSFYPLFPPPAGSAAQLDMRHA RWGMP+TPDVLLVPSRLAQFAR+VQ
Sbjct:  413 FVDSEHPKVASGDATIECVDGGSESVDFETLFRLRLSEKLDKLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEERMFVLDVPKTGARTTSGGASAAAAARQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMPATPDVLLVPSRLAQFARQVQ 634          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A7S2F9H8_9STRA (DNA polymerase alpha subunit B n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9H8_9STRA)

HSP 1 Score: 200 bits (509), Expect = 6.480e-60
Identity = 108/215 (50.23%), Postives = 142/215 (66.05%), Query Frame = 1
Query:    1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQ---LDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636
            F+  N PK++ GD  IE  DG  ESVD++T F  ++S  LE L+  + D   Q VLVPSL D  H++V+PQPPF DRVEGG +     +PE+++F L IP TG G G   KRVH   NPA ++VNEV +GV+S+DVL  L   E++     +NRL RLA H+L+QQSF+PLFP   G A +   +DM  + R  MP +PDVLLVPSRLA FAR++
Sbjct:   82 FVDVNHPKLSGGDVDIETEDGV-ESVDYDTFFNFKISGVLETLYEENPDTKLQVVLVPSLHDAHHDYVFPQPPFADRVEGGQQSPF--FPEEKLFTLDIPHTG-GLGEDSKRVHCVSNPAMIKVNEVVVGVTSTDVLMQLGKAEIAQRPMSSNRLGRLAEHLLKQQSFHPLFPANGGVAGEPVPVDMTKSDRLRMPMSPDVLLVPSRLATFARKL 292          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A7S3URV2_HETAK (DNA polymerase alpha subunit B n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URV2_HETAK)

HSP 1 Score: 188 bits (478), Expect = 2.810e-56
Identity = 107/214 (50.00%), Postives = 141/214 (65.89%), Query Frame = 1
Query:    1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKD--LPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636
            F+  + P+VA G   +E   G+ E+VD  TLF  R+S+KL A +A+       T+  LVPS RD FH+  +PQPPF D+VEGGV      Y  D +  L IP +   AG  +KRVH  PNPA L +NEVTIGV+S+DVLFD+S + V       NR+A+LA  ++QQQS+YP++PPP    A+LD+RHA +W MP TPDVL+VPSRLA FA+ V
Sbjct:    6 FVDEDHPQVAAGAPKLEAEGGAEETVDAHTLFAARVSEKLRAFYAAGGAGAQRTRVALVPSPRDAFHDAAFPQPPFADKVEGGVPNPF--YEGDTLGTLDIPFS---AGL-EKRVHCVPNPATLSLNEVTIGVTSNDVLFDISSNSVMI--NAGNRMAKLAELLIQQQSYYPVYPPPERMEAKLDLRHAAKWRMPVTPDVLVVPSRLAYFAKNV 211          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: W7TPC9_9STRA (DNA polymerase alpha subunit B n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPC9_9STRA)

HSP 1 Score: 189 bits (481), Expect = 5.530e-53
Identity = 105/212 (49.53%), Postives = 141/212 (66.51%), Query Frame = 1
Query:    1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636
            F+  N P+VA+G+  I       ESVDFE+LF++R+S  LE L+ ++  L ++ VLVPSL DVFH+     PP  DR+ GGV      + E+R+ +LG+P      GA  KR++   NP++  VNEV +GV+++D+L  LSGDEVS      NRLARLA H+LQQQSF+PLFPPPA   AQLD+RHA    MP TPDVLL+PS+L  F ++V
Sbjct:  419 FVDANHPQVASGETEIAGAGEEKESVDFESLFKMRVSLFLEGLYDTNPTLASRIVLVPSLNDVFHD----HPPLADRIPGGVPSPW--FEEERLGDLGLPFASEKDGA-DKRLYCLSNPSFFTVNEVAVGVTTNDILCHLSGDEVSY--NPGNRLARLAAHLLQQQSFFPLFPPPADGQAQLDLRHADHLRMPITPDVLLLPSKLTPFVKDV 621          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A836CA88_9STRA (DNA polymerase alpha subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA88_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.910e-49
Identity = 107/224 (47.77%), Postives = 132/224 (58.93%), Query Frame = 1
Query:    1 FMSTNTPKVANGDATIECVDG--------SSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMP---STPDVLLVPSRLAQFAREVQ 639
            F+    P +A G A +    G        ++E VDFETLFRLR+ DKLE + A D   PTQFVL+PS RD FH+  YPQPPF D V GG  LG+G Y +D ++ LG+P        R  RV   PNPA   V       +S+D LFDLS +E + G  G  RLARLA H+LQQ+SFYPL P  AG    LD R A    +    + PDVLL+P RLAQFAR+V+
Sbjct:  430 FVDAEHPLIAAGAAALPVPGGXXXXXXXDAAEPVDFETLFRLRVCDKLERVLA-DPAHPTQFVLIPSTRDAFHDATYPQPPFADAVAGGAPLGIGEYADDAVYTLGLP--------RDARVACLPNPAAFAVGGAVFAATSADSLFDLSCEEAAGGAGGAPRLARLADHLLQQRSFYPLRPARAG--VPLDPRRAAALALAPRGAAPDVLLLPGRLAQFARDVR 642          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A1Z5K576_FISSO (DNA polymerase alpha subunit B n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K576_FISSO)

HSP 1 Score: 175 bits (444), Expect = 9.080e-48
Identity = 93/212 (43.87%), Postives = 130/212 (61.32%), Query Frame = 1
Query:    1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636
            F+  N P V +G   ++  DG+   V +ET F  ++S  LE L   +  L TQFVLVPSL D   E+VYPQPPF DRV GG++  +       +  +G+           KRVH  PNP  L++NEV IG++S+DVLF +S DE +A     +RLAR++ H+LQQ+S+YPLFPP  G    +D ++ + W MP  PD+LL+PS+LA F+R V
Sbjct:  397 FVDMNHPAVQSGQTALQDEDGNDVIVPYETFFMHKISLLLEELLTENPLLMTQFVLVPSLEDATAEWVYPQPPFQDRVSGGLQPNIPGADGITIGTMGLDYVETATELPAKRVHCVPNPCTLQINEVVIGITSTDVLFHMSADETNANLPPGSRLARISQHLLQQRSYYPLFPPAPGM--NMDYQYMEYWSMPCQPDLLLLPSKLACFSRIV 606          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A7S2ERG3_9STRA (DNA polymerase alpha subunit B n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ERG3_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.810e-47
Identity = 94/222 (42.34%), Postives = 133/222 (59.91%), Query Frame = 1
Query:    1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRV-EGGVELGVGAYPEDRMFELGIPKTGA-----GAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSA----AQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636
            F+    P V +G+  I+  +G+   +  E LF  R+S  LE LF  ++ L TQFVLVP L D   EFVYPQPP  DR+ +GG +L + +        LG+    +     G     KR+H  PNP  LR+NEVTIG++S+DVLF ++ DE +      +RLARL  H++QQQS+YPL+PPP  +A      LD++  ++W M   PD+L+VPS+L  FAR+V
Sbjct:  399 FVDIKHPLVQSGNVEIDVGEGNMSKIPHEALFAQRISALLEQLFEDEEGLGTQFVLVPHLDDAVAEFVYPQPPLSDRLPKGGKQLNLSSAEAIDFGSLGLHHIESANRQPGQSTTPKRIHCVPNPCTLRINEVTIGITSTDVLFHMNCDEANGNLPPGSRLARLTQHLIQQQSYYPLYPPPVSNARNSSVNLDLKQMEKWSMECQPDILIVPSKLTTFARKV 620          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A1Z5KI39_FISSO (DNA polymerase alpha subunit B n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KI39_FISSO)

HSP 1 Score: 170 bits (430), Expect = 6.780e-46
Identity = 90/212 (42.45%), Postives = 130/212 (61.32%), Query Frame = 1
Query:    1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPKTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636
            F+  + P V +G   ++  +G+   V +ET F  ++S  LE L      L TQFVLVPSL D   E+VYPQPPF DRV GG++  +       +  +G+           +RVH  PNP  L++NEV IG++S+DVLF +S DE +A     +RLAR++ H+LQQ+S+YPLFPP  G    +D ++ ++W MP  PDVL++PS+LA F+R V
Sbjct:  372 FVDLDHPAVQSGQTILQDEEGNDVIVPYETFFVHKISLLLEELLTEHPMLMTQFVLVPSLEDATAEWVYPQPPFQDRVPGGLQPNIPGADGITIGTMGLDYVETATELPCQRVHCVPNPCTLQINEVVIGITSTDVLFHMSADETNANLPPGSRLARISQHLLQQRSYYPLFPPAPGM--NMDYQYMEQWSMPCQPDVLILPSKLACFSRTV 581          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: A0A7S1CYY6_CYCTE (DNA polymerase alpha subunit B n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYY6_CYCTE)

HSP 1 Score: 160 bits (404), Expect = 1.060e-44
Identity = 89/207 (43.00%), Postives = 126/207 (60.87%), Query Frame = 1
Query:   25 VANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRV-EGGVELGVGAYPEDRMFELGIP--KTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636
            +   D  +E  DG++ +V FE  F  +++  LE LF ++ DL TQFVLVPSL D   E+VYPQ P  DR+  GG  L +          LG+   +T        +RVH   NP  L++NE+ +G++S+DV+F +S +E +   Q  +RL R+A H+LQQ+S+YPLFPP    AA LD+ H Q+W MP  PD+L+VPS+L  FAR V
Sbjct:   47 IGTQDPMLELDDGTTMNVTFEVFFAHKIAAMLEELFETNSDLQTQFVLVPSLDDAVAEWVYPQAPLSDRLPNGGSSLNLPGADGIENGTLGLEHIETMGREHGGPRRVHCVANPCTLQINEIVVGMTSTDVIFHMSCEETNENLQPGSRLGRIAQHLLQQRSYYPLFPP----AASLDLGHMQQWAMPCQPDLLIVPSKLTCFARTV 249          
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Match: B8BYS5_THAPS (DNA polymerase alpha subunit B n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYS5_THAPS)

HSP 1 Score: 165 bits (418), Expect = 6.920e-44
Identity = 93/218 (42.66%), Postives = 128/218 (58.72%), Query Frame = 1
Query:    1 FMSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIP------KTGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQGTNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLVPSRLAQFAREV 636
            F+    P V  G+ TI   DG+ + V +E LF+ + +  LE ++A+D D+ TQFVLVPS  D+  E VYPQPP    V   V  GV  +  D    LG+       +       R KRVH   NP  L++NE+++GV+SSDVLF +S DE +A      RL R+A H++QQ+S+YPLFP  A   A LD+  +  W MP  PD+L+VPS+L  FAR+V
Sbjct:  451 FVDGRQPLVQGGEPTITDEDGNEKKVSYENLFQTKFAALLEEMYANDPDMKTQFVLVPSTEDMICESVYPQPPL---VNQEVTSGVKKF-NDEFGNLGLNYVEIAGRENIKTSERTKRVHCVSNPCTLKINELSVGVTSSDVLFHISSDETNANLPPGGRLTRIAQHLIQQRSYYPLFP--AAKGACLDLSRSDEWEMPVQPDILIVPSKLTTFARKV 662          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8235.17241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTZ2_ECTSI2.030e-12584.68DNA polymerase alpha subunit B n=2 Tax=Ectocarpus ... [more]
A0A7S2F9H8_9STRA6.480e-6050.23DNA polymerase alpha subunit B n=1 Tax=Florenciell... [more]
A0A7S3URV2_HETAK2.810e-5650.00DNA polymerase alpha subunit B n=1 Tax=Heterosigma... [more]
W7TPC9_9STRA5.530e-5349.53DNA polymerase alpha subunit B n=2 Tax=Monodopsida... [more]
A0A836CA88_9STRA1.910e-4947.77DNA polymerase alpha subunit B n=1 Tax=Tribonema m... [more]
A0A1Z5K576_FISSO9.080e-4843.87DNA polymerase alpha subunit B n=1 Tax=Fistulifera... [more]
A0A7S2ERG3_9STRA2.810e-4742.34DNA polymerase alpha subunit B n=2 Tax=Ditylum bri... [more]
A0A1Z5KI39_FISSO6.780e-4642.45DNA polymerase alpha subunit B n=1 Tax=Fistulifera... [more]
A0A7S1CYY6_CYCTE1.060e-4443.00DNA polymerase alpha subunit B n=1 Tax=Cyclophora ... [more]
B8BYS5_THAPS6.920e-4442.66DNA polymerase alpha subunit B n=1 Tax=Thalassiosi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8235contigL-elsbetiae_contig8235:7520..8738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score378.6
Seed ortholog evalue1.9e-102
Seed eggNOG ortholog2880.D8LTZ2
Preferred namePOLA2
KEGG rclassRC02795
KEGG koko:K02321
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000228,GO:0000278,GO:0000428,GO:0000723,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005657,GO:0005658,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006273,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0012505,GO:0016043,GO:0016070,GO:0016233,GO:0018130,GO:0019438,GO:0019725,GO:0022402,GO:0022616,GO:0030880,GO:0030894,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032201,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0034641,GO:0034645,GO:0034654,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0046483,GO:0046982,GO:0046983,GO:0051276,GO:0055029,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1901362,GO:1901576,GO:1902292,GO:1902295,GO:1902315,GO:1902318,GO:1902494,GO:1902969,GO:1902975,GO:1902981,GO:1903047,GO:1990234
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG5214@1,KOG1625@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032
Exons2
Model size639
Cds size636
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8235.17241.1prot_L-elsbetiae_contig8235.17241.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8235 7520..8735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.153288-CDS-L-elsbetiae_contig8235:7519..79451622816907.153288-CDS-L-elsbetiae_contig8235:7519..7945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8235 7520..7945 -
1691683903.0267317-CDS-L-elsbetiae_contig8235:7519..79451691683903.0267317-CDS-L-elsbetiae_contig8235:7519..7945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8235 7520..7945 -
1622816907.1643434-CDS-L-elsbetiae_contig8235:8525..87351622816907.1643434-CDS-L-elsbetiae_contig8235:8525..8735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8235 8526..8735 -
1691683903.0451293-CDS-L-elsbetiae_contig8235:8525..87351691683903.0451293-CDS-L-elsbetiae_contig8235:8525..8735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8235 8526..8735 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.1773207-UTR-L-elsbetiae_contig8235:8735..87381622816907.1773207-UTR-L-elsbetiae_contig8235:8735..8738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8235 8736..8738 -
1691683903.058205-UTR-L-elsbetiae_contig8235:8735..87381691683903.058205-UTR-L-elsbetiae_contig8235:8735..8738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8235 8736..8738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8235.17241.1

>prot_L-elsbetiae_contig8235.17241.1 ID=prot_L-elsbetiae_contig8235.17241.1|Name=mRNA_L-elsbetiae_contig8235.17241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
MSTNTPKVANGDATIECVDGSSESVDFETLFRLRLSDKLEALFASDKDLP
TQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEDRMFELGIPK
TGAGAGARQKRVHLAPNPAWLRVNEVTIGVSSSDVLFDLSGDEVSAGGQG
TNRLARLAGHMLQQQSFYPLFPPPAGSAAQLDMRHAQRWGMPSTPDVLLV
PSRLAQFAREVQ
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mRNA from alignment at L-elsbetiae_contig8235:7520..8738-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8235.17241.1 ID=mRNA_L-elsbetiae_contig8235.17241.1|Name=mRNA_L-elsbetiae_contig8235.17241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1219bp|location=Sequence derived from alignment at L-elsbetiae_contig8235:7520..8738- (Laminarionema elsbetiae ELsaHSoW15)
TTTATGTCCACGAACACGCCGAAGGTGGCGAACGGGGACGCAACGATCGA GTGCGTGGACGGGAGCTCCGAGTCGGTGGACTTCGAGACCCTCTTCCGGC TCCGCCTCTCGGACAAGCTGGAGGCGCTCTTCGCCAGCGACAAGGACCTC CCCACGCAGTTCGTCCTCGTGCCGTCCCTGCGCGACGTTTTCCACGAGTT TGTCTACCCCCAGGTATGTATGTTGTACCTCTGTGTATGTGTGTAAGAGG ATTTATCGGTATCTACAATTATTTGATGCTGTTTATTTTCTTAATTATTT TTAATTCTCCCCTCTCCCTTGTTTCAAGCATCGTTGTACAACAATACTGC TGATTTACTGCTGCTGCTGCTGAAAAGCAGCTAGGATGGGAGGGGCGCGG TGTATGTTATGATCCACGAAACGCAGCAGCAGCAGAGCAGCAGCAGCGCA AGGCAGACCTGGAAGTGTCAATATTCATGCTCGTGAGACGAACATCTGCG TGCCCCCCCCCCCCCCCCCCCCCCCACACACCTTCAATCGCACAAAAAGC GCTGCCCTCTCTCCAACCAGATATCTCGTTAGGCCTTCGTTTTCATTCGT CTAGCGGTGAACAACCTGACACAAGCCCCCCCCCCCCTGCCCCCTTTGTA TTTCTGGATTGTCCCATCGTCTGTCCCCCCTTTCCCTTCCCTTCCCTGCC CCTATTTACTCCACGTAACCGAAAAAAAAAAAAACGCAACAACTATTTAC ATGCACATAAAATAAAACACACGCGCACAAAAACCCCACCCAGCCTCCGT TCCACGATCGGGTCGAGGGGGGCGTCGAGCTGGGCGTGGGAGCCTACCCA GAGGACCGGATGTTCGAGCTCGGCATCCCCAAAACGGGAGCAGGGGCCGG AGCGCGCCAGAAGCGGGTGCACCTCGCCCCGAACCCGGCCTGGCTGCGCG TGAACGAGGTGACGATCGGAGTGTCCTCGTCGGACGTCCTGTTCGACCTC TCCGGGGACGAGGTCAGCGCGGGCGGGCAGGGGACGAACCGACTGGCGCG GCTCGCGGGTCACATGCTGCAGCAGCAGTCGTTCTACCCGCTCTTCCCGC CGCCGGCGGGCTCGGCCGCGCAGCTGGACATGCGCCACGCGCAGCGCTGG GGGATGCCGTCGACGCCCGACGTGCTGCTCGTTCCGTCCAGGCTGGCGCA GTTCGCGCGAGAAGTGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8235:7520..8738-

>mRNA_L-elsbetiae_contig8235.17241.1 ID=mRNA_L-elsbetiae_contig8235.17241.1|Name=mRNA_L-elsbetiae_contig8235.17241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1272bp|location=Sequence derived from alignment at L-elsbetiae_contig8235:7520..8738- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCACGAACACGCCGAAGGTGGCGAACGGGGACGCAACGATCGAGTG
CGTGGACGGGAGCTCCGAGTCGGTGGACTTCGAGACCCTCTTCCGGCTCC
GCCTCTCGGACAAGCTGGAGGCGCTCTTCGCCAGCGACAAGGACCTCCCC
ACGCAGTTCGTCCTCGTGCCGTCCCTGCGCGACGTTTTCCACGAGTTTGT
CTACCCCCAGATGTCCACGAACACGCCGAAGGTGGCGAACGGGGACGCAA
CGATCGAGTGCGTGGACGGGAGCTCCGAGTCGGTGGACTTCGAGACCCTC
TTCCGGCTCCGCCTCTCGGACAAGCTGGAGGCGCTCTTCGCCAGCGACAA
GGACCTCCCCACGCAGTTCGTCCTCGTGCCGTCCCTGCGCGACGTTTTCC
ACGAGTTTGTCTACCCCCAGCCTCCGTTCCACGATCGGGTCGAGGGGGGC
GTCGAGCTGGGCGTGGGAGCCTACCCAGAGGACCGGATGTTCGAGCTCGG
CATCCCCAAAACGGGAGCAGGGGCCGGAGCGCGCCAGAAGCGGGTGCACC
TCGCCCCGAACCCGGCCTGGCTGCGCGTGAACGAGGTGACGATCGGAGTG
TCCTCGTCGGACGTCCTGTTCGACCTCTCCGGGGACGAGGTCAGCGCGGG
CGGGCAGGGGACGAACCGACTGGCGCGGCTCGCGGGTCACATGCTGCAGC
AGCAGTCGTTCTACCCGCTCTTCCCGCCGCCGGCGGGCTCGGCCGCGCAG
CTGGACATGCGCCACGCGCAGCGCTGGGGGATGCCGTCGACGCCCGACGT
GCTGCTCGTTCCGTCCAGGCTGGCGCAGTTCGCGCGAGAAGTGCAGCCTC
CGTTCCACGATCGGGTCGAGGGGGGCGTCGAGCTGGGCGTGGGAGCCTAC
CCAGAGGACCGGATGTTCGAGCTCGGCATCCCCAAAACGGGAGCAGGGGC
CGGAGCGCGCCAGAAGCGGGTGCACCTCGCCCCGAACCCGGCCTGGCTGC
GCGTGAACGAGGTGACGATCGGAGTGTCCTCGTCGGACGTCCTGTTCGAC
CTCTCCGGGGACGAGGTCAGCGCGGGCGGGCAGGGGACGAACCGACTGGC
GCGGCTCGCGGGTCACATGCTGCAGCAGCAGTCGTTCTACCCGCTCTTCC
CGCCGCCGGCGGGCTCGGCCGCGCAGCTGGACATGCGCCACGCGCAGCGC
TGGGGGATGCCGTCGACGCCCGACGTGCTGCTCGTTCCGTCCAGGCTGGC
GCAGTTCGCGCGAGAAGTGCAG
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