prot_L-elsbetiae_contig8230.17234.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8230.17234.1
Unique Nameprot_L-elsbetiae_contig8230.17234.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length117
Homology
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 2.140e-51
Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 0
Query:   16 EAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNNKHGFKFEEYGTSITVRR 117
            EAGVV+K++V NFMCHRKLSVPLC+ V  NFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLN +HGF FEEYG SIT+RR
Sbjct:   82 EAGVVLKVHVSNFMCHRKLSVPLCKHV--NFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNTEHGFMFEEYGESITIRR 181          
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 2.160e-51
Identity = 90/104 (86.54%), Postives = 96/104 (92.31%), Query Frame = 0
Query:   14 KTEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNNKHGFKFEEYGTSITVRR 117
            K+EAGVV+KI V NFMCHRKL+VPLC+  QVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKM DFIRHGWKGDAVLEVTLLN +HGF FEEYG SIT+RR
Sbjct:  173 KSEAGVVLKINVSNFMCHRKLTVPLCK--QVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRHGWKGDAVLEVTLLNTEHGFMFEEYGESITIRR 274          
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: A0A836CML4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML4_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.060e-36
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 0
Query:   15 TEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNNKHGFKFEEYGTSITVRR 117
            +E+GV+++I V+NFMCHR L+V LCR +  NFING NGSGKSAILAALQICLGA+A +THRA K+ D IRHGW GDA +EV +LN   G KF+ YG SITVRR
Sbjct:   72 SESGVILRIDVKNFMCHRHLTVDLCRNI--NFINGSNGSGKSAILAALQICLGARARVTHRAHKLEDLIRHGWGGDAEVEVKMLNTPDGHKFDVYGQSITVRR 172          
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: W7U0X2_9STRA (Structural maintenance of chromosomes 6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0X2_9STRA)

HSP 1 Score: 125 bits (314), Expect = 4.850e-31
Identity = 63/107 (58.88%), Postives = 81/107 (75.70%), Query Frame = 0
Query:   12 GAKTEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNN-KHGFKFEEYGTSITVRR 117
            G   E GV+VKIY ENFMCHRKLS+ LC  V  NFI+G+NGSGKSAILAALQICLGA+A++THR  +++D IR G  G A++ V+LLN     +++++YG  ITV R
Sbjct:  142 GRPAETGVIVKIYCENFMCHRKLSINLCPNV--NFIHGQNGSGKSAILAALQICLGARANVTHRGARLSDMIRQGHDGHAIVRVSLLNKGPDAYEYDKYGDYITVER 246          
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: F0YEV5_AURAN (SMC_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEV5_AURAN)

HSP 1 Score: 115 bits (287), Expect = 6.580e-31
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 0
Query:   17 AGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNN-KHGFKFEEYGTSITVRR 117
            AG++ +IY E+FMCH+KL++  CRR+  NFING NGSGKSAILAALQICLGA A  THR  +M D +R G++G A++ V+L+N      K E YG  IT++R
Sbjct:   11 AGIIHEIYCEHFMCHKKLTIKPCRRI--NFINGANGSGKSAILAALQICLGASAKSTHRGNRMGDLVREGYEGQALVRVSLVNEGSDAAKPEVYGDMITIQR 110          
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: A0A7S1FSU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSU6_9STRA)

HSP 1 Score: 119 bits (297), Expect = 9.260e-29
Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 0
Query:   12 GAKTEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNN-KHGFKFEEYGTSITVRR 117
            G   E G++ ++YVENFMCH+K+++ LCR V  NFI+G+NGSGKSA+LAA+QICLGA A  THRA+ + D IR GW G +V++V LLN     ++ + YG  +TV R
Sbjct:   94 GRPAECGIIHRVYVENFMCHKKMTIDLCRNV--NFIHGQNGSGKSAVLAAVQICLGAGARRTHRARNLKDLIRKGWGGKSVVKVRLLNRGDDAYEHDLYGDYVTVER 198          
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: A0A7S2KU12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KU12_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.490e-28
Identity = 65/110 (59.09%), Postives = 77/110 (70.00%), Query Frame = 0
Query:   12 GAKTEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGD---AVLEVTLLNN-KHGFKFEEYGTSITVRR 117
            G   EAG++ ++YVENFMCHRKLSV LCR V  NFI+G+NGSGKSAILAA+Q+CLGA A  THRA+ + D +R     D   A L VTLLN    GF  E YG +ITV R
Sbjct:  108 GKPAEAGIIQEVYVENFMCHRKLSVKLCRNV--NFIHGQNGSGKSAILAAIQVCLGAGARRTHRARNLKDLVRKEAGADCSGAKLRVTLLNKGSDGFMPEVYGDTITVER 215          
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: A0A3F2RUL6_9STRA (SMC_N domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUL6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 6.100e-28
Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 0
Query:   15 TEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNNKHG---FKFEEYGTSITVRR 117
            TE GVV +IY ENFMCHRKL V LC  +  NFI G NGSGKSAI+AA+QICLGA A  THR K + + IRHG +G+A++ +TL N+  G   F+ E++G  I V R
Sbjct:   71 TEMGVVEEIYCENFMCHRKLRVQLCPHI--NFITGENGSGKSAIIAAIQICLGASARSTHRGKSIKNLIRHGHEGNALVRITLRNDAKGSDAFRPEQFGKKIMVER 174          
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: W2R5D0_PHYPN (SMC_N domain-containing protein n=24 Tax=Phytophthora TaxID=4783 RepID=W2R5D0_PHYPN)

HSP 1 Score: 116 bits (291), Expect = 6.100e-28
Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 0
Query:   15 TEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNNKHG---FKFEEYGTSITVRR 117
            TE GVV +IY ENFMCHRKL V LC  +  NFI G NGSGKSAI+AA+QICLGA A  THR K + + IRHG +G+A++ +TL N+  G   F+ E++G  I V R
Sbjct:   73 TEMGVVEEIYCENFMCHRKLRVSLCPNI--NFITGENGSGKSAIIAAIQICLGASARSTHRGKSIKNLIRHGHEGNALVRITLRNDAKGSDAFRPEQFGRKIQVER 176          
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: A0A662YEN6_9STRA (AAA_23 domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEN6_9STRA)

HSP 1 Score: 116 bits (290), Expect = 8.290e-28
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 0
Query:   12 GAKTEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNNKHG---FKFEEYGTSITVRR 117
            G  +E GVV +IY ENFMCHRK+ V LC  +  NFI G NGSGKSAI+AA+QICLGA A +THR K + + IRHG +G+A++ +TL N+  G   F+ E++G  I V R
Sbjct:  107 GIDSEMGVVEEIYCENFMCHRKMRVALCPHI--NFITGENGSGKSAIIAAIQICLGASARVTHRGKSIKNLIRHGHEGNALVRITLRNDAKGSDAFRPEQFGKRIMVER 213          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M1_ECTSI2.140e-5187.25Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7G4M2_ECTSI2.160e-5186.54Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A836CML4_9STRA1.060e-3666.99P-loop containing nucleoside triphosphate hydrolas... [more]
W7U0X2_9STRA4.850e-3158.88Structural maintenance of chromosomes 6 n=2 Tax=Mo... [more]
F0YEV5_AURAN6.580e-3155.88SMC_N domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S1FSU6_9STRA9.260e-2953.27Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2KU12_9STRA2.490e-2859.09Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A3F2RUL6_9STRA6.100e-2856.60SMC_N domain-containing protein n=3 Tax=Phytophtho... [more]
W2R5D0_PHYPN6.100e-2856.60SMC_N domain-containing protein n=24 Tax=Phytophth... [more]
A0A662YEN6_9STRA8.290e-2854.13AAA_23 domain-containing protein (Fragment) n=2 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 20..117
e-value: 1.9E-18
score: 69.4
NoneNo IPR availablePANTHERPTHR19306STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6coord: 6..117
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 20..114
e-value: 2.8E-11
score: 43.3
IPR027132Structural maintenance of chromosomes protein 6PANTHERPTHR19306:SF6STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6coord: 6..117
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 20..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8230contigL-elsbetiae_contig8230:4192..5883 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8230.17234.1mRNA_L-elsbetiae_contig8230.17234.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8230 4192..5883 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8230.17234.1 ID=prot_L-elsbetiae_contig8230.17234.1|Name=mRNA_L-elsbetiae_contig8230.17234.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MDKKTKKEGEEGAKTEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGR
NGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNN
KHGFKFEEYGTSITVRR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027132SMC6
IPR027417P-loop_NTPase