mRNA_L-elsbetiae_contig8230.17234.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI) HSP 1 Score: 183 bits (465), Expect = 2.140e-51 Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 1 Query: 46 EAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNNKHGFKFEEYGTSITVRR 351 EAGVV+K++V NFMCHRKLSVPLC+ V NFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLN +HGF FEEYG SIT+RR Sbjct: 82 EAGVVLKVHVSNFMCHRKLSVPLCKHV--NFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNTEHGFMFEEYGESITIRR 181
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI) HSP 1 Score: 183 bits (465), Expect = 2.160e-51 Identity = 90/104 (86.54%), Postives = 96/104 (92.31%), Query Frame = 1 Query: 40 KTEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNNKHGFKFEEYGTSITVRR 351 K+EAGVV+KI V NFMCHRKL+VPLC+ QVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKM DFIRHGWKGDAVLEVTLLN +HGF FEEYG SIT+RR Sbjct: 173 KSEAGVVLKINVSNFMCHRKLTVPLCK--QVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRHGWKGDAVLEVTLLNTEHGFMFEEYGESITIRR 274
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: A0A836CML4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML4_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.060e-36 Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 1 Query: 43 TEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNNKHGFKFEEYGTSITVRR 351 +E+GV+++I V+NFMCHR L+V LCR + NFING NGSGKSAILAALQICLGA+A +THRA K+ D IRHGW GDA +EV +LN G KF+ YG SITVRR Sbjct: 72 SESGVILRIDVKNFMCHRHLTVDLCRNI--NFINGSNGSGKSAILAALQICLGARARVTHRAHKLEDLIRHGWGGDAEVEVKMLNTPDGHKFDVYGQSITVRR 172
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: W7U0X2_9STRA (Structural maintenance of chromosomes 6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0X2_9STRA) HSP 1 Score: 125 bits (314), Expect = 4.850e-31 Identity = 63/107 (58.88%), Postives = 81/107 (75.70%), Query Frame = 1 Query: 34 GAKTEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNN-KHGFKFEEYGTSITVRR 351 G E GV+VKIY ENFMCHRKLS+ LC V NFI+G+NGSGKSAILAALQICLGA+A++THR +++D IR G G A++ V+LLN +++++YG ITV R Sbjct: 142 GRPAETGVIVKIYCENFMCHRKLSINLCPNV--NFIHGQNGSGKSAILAALQICLGARANVTHRGARLSDMIRQGHDGHAIVRVSLLNKGPDAYEYDKYGDYITVER 246
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: F0YEV5_AURAN (SMC_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEV5_AURAN) HSP 1 Score: 115 bits (287), Expect = 6.580e-31 Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 1 Query: 49 AGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNN-KHGFKFEEYGTSITVRR 351 AG++ +IY E+FMCH+KL++ CRR+ NFING NGSGKSAILAALQICLGA A THR +M D +R G++G A++ V+L+N K E YG IT++R Sbjct: 11 AGIIHEIYCEHFMCHKKLTIKPCRRI--NFINGANGSGKSAILAALQICLGASAKSTHRGNRMGDLVREGYEGQALVRVSLVNEGSDAAKPEVYGDMITIQR 110
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: A0A7S1FSU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSU6_9STRA) HSP 1 Score: 119 bits (297), Expect = 9.260e-29 Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 1 Query: 34 GAKTEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNN-KHGFKFEEYGTSITVRR 351 G E G++ ++YVENFMCH+K+++ LCR V NFI+G+NGSGKSA+LAA+QICLGA A THRA+ + D IR GW G +V++V LLN ++ + YG +TV R Sbjct: 94 GRPAECGIIHRVYVENFMCHKKMTIDLCRNV--NFIHGQNGSGKSAVLAAVQICLGAGARRTHRARNLKDLIRKGWGGKSVVKVRLLNRGDDAYEHDLYGDYVTVER 198
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: A0A7S2KU12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KU12_9STRA) HSP 1 Score: 117 bits (293), Expect = 2.490e-28 Identity = 65/110 (59.09%), Postives = 77/110 (70.00%), Query Frame = 1 Query: 34 GAKTEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGD---AVLEVTLLNN-KHGFKFEEYGTSITVRR 351 G EAG++ ++YVENFMCHRKLSV LCR V NFI+G+NGSGKSAILAA+Q+CLGA A THRA+ + D +R D A L VTLLN GF E YG +ITV R Sbjct: 108 GKPAEAGIIQEVYVENFMCHRKLSVKLCRNV--NFIHGQNGSGKSAILAAIQVCLGAGARRTHRARNLKDLVRKEAGADCSGAKLRVTLLNKGSDGFMPEVYGDTITVER 215
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: A0A3F2RUL6_9STRA (SMC_N domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUL6_9STRA) HSP 1 Score: 116 bits (291), Expect = 6.100e-28 Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 1 Query: 43 TEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNNKHG---FKFEEYGTSITVRR 351 TE GVV +IY ENFMCHRKL V LC + NFI G NGSGKSAI+AA+QICLGA A THR K + + IRHG +G+A++ +TL N+ G F+ E++G I V R Sbjct: 71 TEMGVVEEIYCENFMCHRKLRVQLCPHI--NFITGENGSGKSAIIAAIQICLGASARSTHRGKSIKNLIRHGHEGNALVRITLRNDAKGSDAFRPEQFGKKIMVER 174
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: W2R5D0_PHYPN (SMC_N domain-containing protein n=24 Tax=Phytophthora TaxID=4783 RepID=W2R5D0_PHYPN) HSP 1 Score: 116 bits (291), Expect = 6.100e-28 Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 1 Query: 43 TEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNNKHG---FKFEEYGTSITVRR 351 TE GVV +IY ENFMCHRKL V LC + NFI G NGSGKSAI+AA+QICLGA A THR K + + IRHG +G+A++ +TL N+ G F+ E++G I V R Sbjct: 73 TEMGVVEEIYCENFMCHRKLRVSLCPNI--NFITGENGSGKSAIIAAIQICLGASARSTHRGKSIKNLIRHGHEGNALVRITLRNDAKGSDAFRPEQFGRKIQVER 176
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Match: A0A662YEN6_9STRA (AAA_23 domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEN6_9STRA) HSP 1 Score: 116 bits (290), Expect = 8.290e-28 Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 1 Query: 34 GAKTEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNNKHG---FKFEEYGTSITVRR 351 G +E GVV +IY ENFMCHRK+ V LC + NFI G NGSGKSAI+AA+QICLGA A +THR K + + IRHG +G+A++ +TL N+ G F+ E++G I V R Sbjct: 107 GIDSEMGVVEEIYCENFMCHRKMRVALCPHI--NFITGENGSGKSAIIAAIQICLGASARVTHRGKSIKNLIRHGHEGNALVRITLRNDAKGSDAFRPEQFGKRIMVER 213 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8230.17234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8230.17234.1 >prot_L-elsbetiae_contig8230.17234.1 ID=prot_L-elsbetiae_contig8230.17234.1|Name=mRNA_L-elsbetiae_contig8230.17234.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp MDKKTKKEGEEGAKTEAGVVVKIYVENFMCHRKLSVPLCRRVQVNFINGRback to top mRNA from alignment at L-elsbetiae_contig8230:4192..5883- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8230.17234.1 ID=mRNA_L-elsbetiae_contig8230.17234.1|Name=mRNA_L-elsbetiae_contig8230.17234.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1692bp|location=Sequence derived from alignment at L-elsbetiae_contig8230:4192..5883- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8230:4192..5883- >mRNA_L-elsbetiae_contig8230.17234.1 ID=mRNA_L-elsbetiae_contig8230.17234.1|Name=mRNA_L-elsbetiae_contig8230.17234.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig8230:4192..5883- (Laminarionema elsbetiae ELsaHSoW15)back to top |