prot_L-elsbetiae_contig8203.17207.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8203.17207.1
Unique Nameprot_L-elsbetiae_contig8203.17207.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length83
Homology
BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.930e-37
Identity = 73/83 (87.95%), Postives = 80/83 (96.39%), Query Frame = 0
Query:    1 LKVSRESHEANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 83
            LK SR++HEANK +LKSDLKKTTAFTKKVKALSEDQR++L KDV+TLNL+RYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR
Sbjct:  440 LKASRDAHEANKPKLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 522          
BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.120e-28
Identity = 57/81 (70.37%), Postives = 70/81 (86.42%), Query Frame = 0
Query:    3 VSRESHEANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 83
             SR SH ANK++LKSDLKKT+ FT KV+ L+E QRA++ KD++TLNLS YVSE+VDAVAE +LK +DVSVAVHLCC+MHQR
Sbjct:   28 ASRASHNANKSKLKSDLKKTSTFTSKVRTLTEAQRATITKDIETLNLSHYVSEIVDAVAEAKLKTSDVSVAVHLCCMMHQR 108          
BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: A0A3R7M352_PENVA (Regulator of nonsense transcripts 2 n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7M352_PENVA)

HSP 1 Score: 84.3 bits (207), Expect = 9.580e-19
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 0
Query:    9 EANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 83
            E N A L S LKK TAF +K+K L+E Q  SL KD+ +LNL++YVSEV  AV E +LK +D+S AVHLC L+HQR
Sbjct:   54 ELNTALLDSSLKKNTAFIRKLKNLTESQHDSLVKDLQSLNLTKYVSEVAQAVVETKLKMSDISTAVHLCSLLHQR 128          
BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: A0A8J5NAL5_HOMAM (Regulator of nonsense transcripts 2-like n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5NAL5_HOMAM)

HSP 1 Score: 84.7 bits (208), Expect = 2.550e-17
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 0
Query:    1 LKVSRESHEANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 83
            L V+++  E N A L S LKK TAF KK+K L+E Q  SL +D+ +LNL++YVSEV  AV E +LK +D++ AVHLC L+HQR
Sbjct:  114 LAVAKDRPELNTAMLDSSLKKNTAFIKKLKNLTESQHDSLIRDLQSLNLTKYVSEVAQAVVEAKLKMSDITTAVHLCSLLHQR 196          
BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: UPI001C45EDC1 (regulator of nonsense transcripts 2-like isoform X1 n=5 Tax=Astacidea TaxID=6712 RepID=UPI001C45EDC1)

HSP 1 Score: 84.7 bits (208), Expect = 2.570e-17
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 0
Query:    1 LKVSRESHEANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 83
            L V+++  E N A L S LKK TAF KK+K L+E Q  SL +D+ +LNL++YVSEV  AV E +LK +D++ AVHLC L+HQR
Sbjct:  140 LAVAKDRPELNTAMLDSSLKKNTAFIKKLKNLTESQHDSLIRDLQSLNLTKYVSEVAQAVVEAKLKMSDITTAVHLCSLLHQR 222          
BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: A0A444TD93_ARMVU (Regulator of nonsense transcripts 2 n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TD93_ARMVU)

HSP 1 Score: 84.0 bits (206), Expect = 3.290e-17
Identity = 43/83 (51.81%), Postives = 62/83 (74.70%), Query Frame = 0
Query:    1 LKVSRESHEANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 83
            L  +++  E + ++L S LKK TAF KK++ ++E Q+A+L+K++  LNLS+YVSE+  AV E RLK ADV+ AVHLC L+HQR
Sbjct:  127 LLAAKDRQELDTSKLDSSLKKNTAFIKKMRNMTESQQATLEKELLCLNLSKYVSELAQAVVETRLKMADVATAVHLCSLLHQR 209          
BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: UPI001C716FA3 (regulator of nonsense transcripts 2-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C716FA3)

HSP 1 Score: 84.3 bits (207), Expect = 3.460e-17
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 0
Query:    9 EANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 83
            E N A L S LKK TAF KK+K L+E Q  SL KD+ +LNL++YVSEV  AV E +LK +D++ AVHLC L+HQR
Sbjct:  138 ELNTALLDSSLKKNTAFIKKLKNLTESQHDSLVKDLQSLNLTKYVSEVAQAVVETKLKMSDIATAVHLCSLLHQR 212          
BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: UPI001C710D49 (regulator of nonsense transcripts 2-like n=5 Tax=Penaeus TaxID=133894 RepID=UPI001C710D49)

HSP 1 Score: 84.3 bits (207), Expect = 3.510e-17
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 0
Query:    9 EANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 83
            E N A L S LKK TAF KK+K L+E Q  SL KD+ +LNL++YVSEV  AV E +LK +D++ AVHLC L+HQR
Sbjct:  138 ELNTALLDSSLKKNTAFIKKLKNLTESQHDSLVKDLQSLNLTKYVSEVAQAVVETKLKMSDIATAVHLCSLLHQR 212          
BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: UPI001C8AE1E4 (regulator of nonsense transcripts 2-like n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8AE1E4)

HSP 1 Score: 83.6 bits (205), Expect = 4.710e-17
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 0
Query:    9 EANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 83
            EA  +RL S LKK TAF KK++ L+E QRASL +D D+LNLS+Y+ E V ++ E +LK +DV  AVHLC L HQR
Sbjct:  157 EAFFSRLDSSLKKNTAFVKKLRTLTEQQRASLSQDFDSLNLSKYIGEAVSSMVEAKLKISDVGCAVHLCSLFHQR 231          
BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: A0A0P4WH54_SCYOL (Uncharacterized protein n=3 Tax=Portunidae TaxID=6757 RepID=A0A0P4WH54_SCYOL)

HSP 1 Score: 84.0 bits (206), Expect = 4.790e-17
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 0
Query:    1 LKVSRESHEANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 83
            L V+++  E N A L S LKK TAF KK+K L+E Q  SL +D+ +LNL++YVSEV  AV E +LK +D++ AVH+C L+HQR
Sbjct:  128 LAVAKDRPELNTALLDSSLKKNTAFIKKLKNLTESQHESLVRDLQSLNLTKYVSEVAQAVVEAKLKMSDINTAVHICSLLHQR 210          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEF3_ECTSI1.930e-3787.95Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YRH9_9STRA2.120e-2870.37Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A3R7M352_PENVA9.580e-1958.67Regulator of nonsense transcripts 2 n=1 Tax=Penaeu... [more]
A0A8J5NAL5_HOMAM2.550e-1754.22Regulator of nonsense transcripts 2-like n=1 Tax=H... [more]
UPI001C45EDC12.570e-1754.22regulator of nonsense transcripts 2-like isoform X... [more]
A0A444TD93_ARMVU3.290e-1751.81Regulator of nonsense transcripts 2 n=1 Tax=Armadi... [more]
UPI001C716FA33.460e-1758.67regulator of nonsense transcripts 2-like n=1 Tax=P... [more]
UPI001C710D493.510e-1758.67regulator of nonsense transcripts 2-like n=5 Tax=P... [more]
UPI001C8AE1E44.710e-1757.33regulator of nonsense transcripts 2-like n=1 Tax=P... [more]
A0A0P4WH54_SCYOL4.790e-1753.01Uncharacterized protein n=3 Tax=Portunidae TaxID=6... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016021MIF4G-like domain superfamilyGENE3D1.25.40.180coord: 1..83
e-value: 1.2E-28
score: 102.2
IPR039762Nonsense-mediated mRNA decay protein Nmd2/UPF2PANTHERPTHR12839NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2coord: 8..83
NoneNo IPR availablePANTHERPTHR12839:SF7REGULATOR OF NONSENSE TRANSCRIPTS 2coord: 8..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8203contigL-elsbetiae_contig8203:8027..8275 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8203.17207.1mRNA_L-elsbetiae_contig8203.17207.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8203 8027..8275 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8203.17207.1 ID=prot_L-elsbetiae_contig8203.17207.1|Name=mRNA_L-elsbetiae_contig8203.17207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
LKVSRESHEANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLS
RYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016021MIF4-like_sf
IPR039762Nmd2/UPF2