mRNA_L-elsbetiae_contig8203.17207.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8203.17207.1
Unique NamemRNA_L-elsbetiae_contig8203.17207.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.930e-37
Identity = 73/83 (87.95%), Postives = 80/83 (96.39%), Query Frame = 1 
Query:    1 LKVSRESHEANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 249
            LK SR++HEANK +LKSDLKKTTAFTKKVKALSEDQR++L KDV+TLNL+RYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR
Sbjct:  440 LKASRDAHEANKPKLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 522
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BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.120e-28
Identity = 57/81 (70.37%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:    7 VSRESHEANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 249
             SR SH ANK++LKSDLKKT+ FT KV+ L+E QRA++ KD++TLNLS YVSE+VDAVAE +LK +DVSVAVHLCC+MHQR
Sbjct:   28 ASRASHNANKSKLKSDLKKTSTFTSKVRTLTEAQRATITKDIETLNLSHYVSEIVDAVAEAKLKTSDVSVAVHLCCMMHQR 108
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BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: A0A3R7M352_PENVA (Regulator of nonsense transcripts 2 n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7M352_PENVA)

HSP 1 Score: 84.3 bits (207), Expect = 9.580e-19
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   25 EANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 249
            E N A L S LKK TAF +K+K L+E Q  SL KD+ +LNL++YVSEV  AV E +LK +D+S AVHLC L+HQR
Sbjct:   54 ELNTALLDSSLKKNTAFIRKLKNLTESQHDSLVKDLQSLNLTKYVSEVAQAVVETKLKMSDISTAVHLCSLLHQR 128
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BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: A0A8J5NAL5_HOMAM (Regulator of nonsense transcripts 2-like n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5NAL5_HOMAM)

HSP 1 Score: 84.7 bits (208), Expect = 2.550e-17
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    1 LKVSRESHEANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 249
            L V+++  E N A L S LKK TAF KK+K L+E Q  SL +D+ +LNL++YVSEV  AV E +LK +D++ AVHLC L+HQR
Sbjct:  114 LAVAKDRPELNTAMLDSSLKKNTAFIKKLKNLTESQHDSLIRDLQSLNLTKYVSEVAQAVVEAKLKMSDITTAVHLCSLLHQR 196
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BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: UPI001C45EDC1 (regulator of nonsense transcripts 2-like isoform X1 n=5 Tax=Astacidea TaxID=6712 RepID=UPI001C45EDC1)

HSP 1 Score: 84.7 bits (208), Expect = 2.570e-17
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    1 LKVSRESHEANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 249
            L V+++  E N A L S LKK TAF KK+K L+E Q  SL +D+ +LNL++YVSEV  AV E +LK +D++ AVHLC L+HQR
Sbjct:  140 LAVAKDRPELNTAMLDSSLKKNTAFIKKLKNLTESQHDSLIRDLQSLNLTKYVSEVAQAVVEAKLKMSDITTAVHLCSLLHQR 222
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BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: A0A444TD93_ARMVU (Regulator of nonsense transcripts 2 n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TD93_ARMVU)

HSP 1 Score: 84.0 bits (206), Expect = 3.290e-17
Identity = 43/83 (51.81%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    1 LKVSRESHEANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 249
            L  +++  E + ++L S LKK TAF KK++ ++E Q+A+L+K++  LNLS+YVSE+  AV E RLK ADV+ AVHLC L+HQR
Sbjct:  127 LLAAKDRQELDTSKLDSSLKKNTAFIKKMRNMTESQQATLEKELLCLNLSKYVSELAQAVVETRLKMADVATAVHLCSLLHQR 209
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BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: UPI001C716FA3 (regulator of nonsense transcripts 2-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C716FA3)

HSP 1 Score: 84.3 bits (207), Expect = 3.460e-17
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   25 EANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 249
            E N A L S LKK TAF KK+K L+E Q  SL KD+ +LNL++YVSEV  AV E +LK +D++ AVHLC L+HQR
Sbjct:  138 ELNTALLDSSLKKNTAFIKKLKNLTESQHDSLVKDLQSLNLTKYVSEVAQAVVETKLKMSDIATAVHLCSLLHQR 212
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BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: UPI001C710D49 (regulator of nonsense transcripts 2-like n=5 Tax=Penaeus TaxID=133894 RepID=UPI001C710D49)

HSP 1 Score: 84.3 bits (207), Expect = 3.510e-17
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   25 EANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 249
            E N A L S LKK TAF KK+K L+E Q  SL KD+ +LNL++YVSEV  AV E +LK +D++ AVHLC L+HQR
Sbjct:  138 ELNTALLDSSLKKNTAFIKKLKNLTESQHDSLVKDLQSLNLTKYVSEVAQAVVETKLKMSDIATAVHLCSLLHQR 212
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BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: UPI001C8AE1E4 (regulator of nonsense transcripts 2-like n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8AE1E4)

HSP 1 Score: 83.6 bits (205), Expect = 4.710e-17
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   25 EANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 249
            EA  +RL S LKK TAF KK++ L+E QRASL +D D+LNLS+Y+ E V ++ E +LK +DV  AVHLC L HQR
Sbjct:  157 EAFFSRLDSSLKKNTAFVKKLRTLTEQQRASLSQDFDSLNLSKYIGEAVSSMVEAKLKISDVGCAVHLCSLFHQR 231
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BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Match: A0A0P4WH54_SCYOL (Uncharacterized protein n=3 Tax=Portunidae TaxID=6757 RepID=A0A0P4WH54_SCYOL)

HSP 1 Score: 84.0 bits (206), Expect = 4.790e-17
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    1 LKVSRESHEANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLSRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR 249
            L V+++  E N A L S LKK TAF KK+K L+E Q  SL +D+ +LNL++YVSEV  AV E +LK +D++ AVH+C L+HQR
Sbjct:  128 LAVAKDRPELNTALLDSSLKKNTAFIKKLKNLTESQHESLVRDLQSLNLTKYVSEVAQAVVEAKLKMSDINTAVHICSLLHQR 210
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8203.17207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEF3_ECTSI1.930e-3787.95Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YRH9_9STRA2.120e-2870.37Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A3R7M352_PENVA9.580e-1958.67Regulator of nonsense transcripts 2 n=1 Tax=Penaeu... [more]
A0A8J5NAL5_HOMAM2.550e-1754.22Regulator of nonsense transcripts 2-like n=1 Tax=H... [more]
UPI001C45EDC12.570e-1754.22regulator of nonsense transcripts 2-like isoform X... [more]
A0A444TD93_ARMVU3.290e-1751.81Regulator of nonsense transcripts 2 n=1 Tax=Armadi... [more]
UPI001C716FA33.460e-1758.67regulator of nonsense transcripts 2-like n=1 Tax=P... [more]
UPI001C710D493.510e-1758.67regulator of nonsense transcripts 2-like n=5 Tax=P... [more]
UPI001C8AE1E44.710e-1757.33regulator of nonsense transcripts 2-like n=1 Tax=P... [more]
A0A0P4WH54_SCYOL4.790e-1753.01Uncharacterized protein n=3 Tax=Portunidae TaxID=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8203contigL-elsbetiae_contig8203:8027..8275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue3e-32
Seed eggNOG ortholog2880.D8LEF3
Preferred nameUPF2
KEGG koko:K14327
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006259,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007274,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009751,GO:0009753,GO:0009755,GO:0009863,GO:0009867,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019899,GO:0023052,GO:0031503,GO:0031974,GO:0031981,GO:0032870,GO:0032991,GO:0033036,GO:0034427,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0035690,GO:0035770,GO:0036464,GO:0042162,GO:0042221,GO:0042493,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0048571,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070727,GO:0070887,GO:0071166,GO:0071229,GO:0071236,GO:0071310,GO:0071395,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097159,GO:0098542,GO:0098916,GO:0099536,GO:0099537,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1901701,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsKOG2051@1,KOG2051@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.6399276-CDS-L-elsbetiae_contig8203:8026..82751622816904.6399276-CDS-L-elsbetiae_contig8203:8026..8275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8203 8027..8275 +
1691683901.2488968-CDS-L-elsbetiae_contig8203:8026..82751691683901.2488968-CDS-L-elsbetiae_contig8203:8026..8275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8203 8027..8275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8203.17207.1prot_L-elsbetiae_contig8203.17207.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8203 8027..8275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8203.17207.1

>prot_L-elsbetiae_contig8203.17207.1 ID=prot_L-elsbetiae_contig8203.17207.1|Name=mRNA_L-elsbetiae_contig8203.17207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
LKVSRESHEANKARLKSDLKKTTAFTKKVKALSEDQRASLDKDVDTLNLS
RYVSEVVDAVAENRLKNADVSVAVHLCCLMHQR
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mRNA from alignment at L-elsbetiae_contig8203:8027..8275+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8203.17207.1 ID=mRNA_L-elsbetiae_contig8203.17207.1|Name=mRNA_L-elsbetiae_contig8203.17207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=249bp|location=Sequence derived from alignment at L-elsbetiae_contig8203:8027..8275+ (Laminarionema elsbetiae ELsaHSoW15)
CTGAAGGTGTCTCGGGAGTCGCACGAAGCCAACAAGGCCAGGCTCAAGTC
CGACCTCAAGAAGACGACTGCCTTCACCAAGAAGGTCAAGGCGCTCTCGG
AGGACCAGCGCGCGTCCCTCGACAAGGACGTCGACACCCTGAACCTCAGC
CGCTACGTCAGCGAGGTGGTGGACGCGGTGGCGGAGAACAGGCTCAAGAA
CGCCGACGTGTCCGTCGCGGTGCACCTGTGCTGCCTCATGCACCAGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8203:8027..8275+

>mRNA_L-elsbetiae_contig8203.17207.1 ID=mRNA_L-elsbetiae_contig8203.17207.1|Name=mRNA_L-elsbetiae_contig8203.17207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig8203:8027..8275+ (Laminarionema elsbetiae ELsaHSoW15)
CTGAAGGTGTCTCGGGAGTCGCACGAAGCCAACAAGGCCAGGCTCAAGTC
CGACCTCAAGAAGACGACTGCCTTCACCAAGAAGGTCAAGGCGCTCTCGG
AGGACCAGCGCGCGTCCCTCGACAAGGACGTCGACACCCTGAACCTCAGC
CGCTACGTCAGCGAGGTGGTGGACGCGGTGGCGGAGAACAGGCTCAAGAA
CGCCGACGTGTCCGTCGCGGTGCACCTGTGCTGCCTCATGCACCAGAGGC
TGAAGGTGTCTCGGGAGTCGCACGAAGCCAACAAGGCCAGGCTCAAGTCC
GACCTCAAGAAGACGACTGCCTTCACCAAGAAGGTCAAGGCGCTCTCGGA
GGACCAGCGCGCGTCCCTCGACAAGGACGTCGACACCCTGAACCTCAGCC
GCTACGTCAGCGAGGTGGTGGACGCGGTGGCGGAGAACAGGCTCAAGAAC
GCCGACGTGTCCGTCGCGGTGCACCTGTGCTGCCTCATGCACCAGAGG
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