prot_L-elsbetiae_contig8200.17205.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8200.17205.1
Unique Nameprot_L-elsbetiae_contig8200.17205.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length155
Homology
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BLAST of mRNA_L-elsbetiae_contig8200.17205.1 vs. uniprot
Match: A0A6H5KH38_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH38_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 6.470e-41
Identity = 78/110 (70.91%), Postives = 91/110 (82.73%), Query Frame = 0 
Query:   27 SQAVVVMRLPDGTSATHTFGGVATLREVVSWLQSNEPTAGKLEGKEVELRCPFPPPGLAVTGGDLDSNTVEGVGLCPRGRLMVQFSGEAGIKQGEGGMPSA-NSRPGAHR 135
            ++A+VVMRLPDGTS TH+FG  ATLREV++WLQS EPTAGKL  KE++LRCPFPPPG A+ G +LDS+TVE VGL PRGRLMVQFS  A IK+GEG MPSA N + GA R
Sbjct:  150 AEAMVVMRLPDGTSTTHSFGTAATLREVLTWLQSTEPTAGKLRSKELQLRCPFPPPGRAIAGDELDSSTVESVGLFPRGRLMVQFSDGATIKKGEGAMPSADNDQAGATR 259
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8200.17205.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH38_9PHAE6.470e-4170.91UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 22..111
e-value: 3.4E-9
score: 38.7
IPR001012UBX domainPFAMPF00789UBXcoord: 24..110
e-value: 9.6E-6
score: 25.7
IPR001012UBX domainPROSITEPS50033UBXcoord: 24..109
score: 11.631
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 6..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8200contigL-elsbetiae_contig8200:3045..8409 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8200.17205.1mRNA_L-elsbetiae_contig8200.17205.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8200 3045..8409 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8200.17205.1 ID=prot_L-elsbetiae_contig8200.17205.1|Name=mRNA_L-elsbetiae_contig8200.17205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
SGGGEAEAKEKEKEGPPPSSPPAEAASQAVVVMRLPDGTSATHTFGGVAT
LREVVSWLQSNEPTAGKLEGKEVELRCPFPPPGLAVTGGDLDSNTVEGVG
LCPRGRLMVQFSGEAGIKQGEGGMPSANSRPGAHRTHFGGLGGGGGRGPP
FHLGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001012UBX_dom
IPR029071Ubiquitin-like_domsf