mRNA_L-elsbetiae_contig8200.17205.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8200.17205.1
Unique NamemRNA_L-elsbetiae_contig8200.17205.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8200.17205.1 vs. uniprot
Match: A0A6H5KH38_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH38_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 6.470e-41
Identity = 78/110 (70.91%), Postives = 91/110 (82.73%), Query Frame = 1 
Query:   79 SQAVVVMRLPDGTSATHTFGGVATLREVVSWLQSNEPTAGKLEGKEVELRCPFPPPGLAVTGGDLDSNTVEGVGLCPRGRLMVQFSGEAGIKQGEGGMPSA-NSRPGAHR 405
            ++A+VVMRLPDGTS TH+FG  ATLREV++WLQS EPTAGKL  KE++LRCPFPPPG A+ G +LDS+TVE VGL PRGRLMVQFS  A IK+GEG MPSA N + GA R
Sbjct:  150 AEAMVVMRLPDGTSTTHSFGTAATLREVLTWLQSTEPTAGKLRSKELQLRCPFPPPGRAIAGDELDSSTVESVGLFPRGRLMVQFSDGATIKKGEGAMPSADNDQAGATR 259
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8200.17205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH38_9PHAE6.470e-4170.91UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8200contigL-elsbetiae_contig8200:3045..8409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size467
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8200.17205.1prot_L-elsbetiae_contig8200.17205.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8200 3045..8409 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.5217743-CDS-L-elsbetiae_contig8200:3044..31741622816904.5217743-CDS-L-elsbetiae_contig8200:3044..3174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8200 3045..3174 -
1691683901.1516137-CDS-L-elsbetiae_contig8200:3044..31741691683901.1516137-CDS-L-elsbetiae_contig8200:3044..3174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8200 3045..3174 -
1622816904.5329542-CDS-L-elsbetiae_contig8200:4623..47621622816904.5329542-CDS-L-elsbetiae_contig8200:4623..4762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8200 4624..4762 -
1691683901.1649244-CDS-L-elsbetiae_contig8200:4623..47621691683901.1649244-CDS-L-elsbetiae_contig8200:4623..4762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8200 4624..4762 -
1622816904.5436003-CDS-L-elsbetiae_contig8200:6907..70191622816904.5436003-CDS-L-elsbetiae_contig8200:6907..7019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8200 6908..7019 -
1691683901.179127-CDS-L-elsbetiae_contig8200:6907..70191691683901.179127-CDS-L-elsbetiae_contig8200:6907..7019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8200 6908..7019 -
1622816904.5537815-CDS-L-elsbetiae_contig8200:8325..84091622816904.5537815-CDS-L-elsbetiae_contig8200:8325..8409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8200 8326..8409 -
1691683901.191336-CDS-L-elsbetiae_contig8200:8325..84091691683901.191336-CDS-L-elsbetiae_contig8200:8325..8409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8200 8326..8409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8200.17205.1

>prot_L-elsbetiae_contig8200.17205.1 ID=prot_L-elsbetiae_contig8200.17205.1|Name=mRNA_L-elsbetiae_contig8200.17205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
SGGGEAEAKEKEKEGPPPSSPPAEAASQAVVVMRLPDGTSATHTFGGVAT
LREVVSWLQSNEPTAGKLEGKEVELRCPFPPPGLAVTGGDLDSNTVEGVG
LCPRGRLMVQFSGEAGIKQGEGGMPSANSRPGAHRTHFGGLGGGGGRGPP
FHLGG
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mRNA from alignment at L-elsbetiae_contig8200:3045..8409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8200.17205.1 ID=mRNA_L-elsbetiae_contig8200.17205.1|Name=mRNA_L-elsbetiae_contig8200.17205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5365bp|location=Sequence derived from alignment at L-elsbetiae_contig8200:3045..8409- (Laminarionema elsbetiae ELsaHSoW15)
AGTGGGGGCGGCGAGGCGGAGGCAAAGGAAAAGGAAAAGGAGGGACCGCC
GCCGTCGTCACCCCCGGCCGAGGCTGCCTCTCAGGTATTTTCTCGGAATT
TTATTTCGTCCTGTTCCATGTATGTGTGTATGTGATTATGTACGGTATTC
AACCACGCGACGCAAGGGGTTCCGTCAATGCGATTGTACGGTATTCAACC
GCGCGACGCAGGGGTTCCGTGATGCGATCTTTCATTCAGCAGTTGATGGG
ACACATATACTTACTCTGTGTATGACGCGAAAGGCAGGAGTCATTTTTGC
TCCGAGCCGCCGTCGAGCTTCCTTGCCTCCCCCCCCCCCCCCCCCCCCAG
CCCCCCCTCCCCCCCCCGACCCCCCACCCCTCCCCACACCGCGGCCCGGC
GCCTTGNNNNNNNNNNAAAGGCAGGGGTCCTTTTTGCTCCCAGCCGCCGT
CCAGCTTCCTTGCCCCCCCCCCCCCCCTCTCTCTTCTCCTCCTCCTCCTC
CCCGTCATCCTCTCGCTGTATATTTTGGCGGGGGCGCTTTTAGCCAGCCA
GGGCCCCCCCCCCCCCCCCCAGTTCCTCTCCTGCCCCCCCCCCGTCCCAA
TATGGGATCTGTGTGCTATGTTATGTGTGATATGCATGTTGTGTGTGCAC
TTGTCCTCCTCGTCTGCCGCTGTTTGCAGTACAAGGTGGCAGCATGGCAG
CAGCAGCAGCAGTACCTTAGCAGTGGAGGGGTAGTTTGCGTTCCTTTGTC
GCCTACTGTGCAGCAGCGATCATTCACCTGCCTCGATCTGCTCGCGCTGA
AGTAAAAAAGGCGACCGCGCCTTTCTCGAGAAGGAAAGGCGAGGCGATAT
GAGGGGGCAGGGGCGTGCGAACATGGAAAAAGAGCTGCCGCTGCGTCTAC
CCCACTACCCCTCTGTGCGCATACGATACGACGTAGCCCCCCCCCCCCCG
ATGGAACACTAACCGCTGCTACACAGATACTTGACCGCTGCTACATGGAT
ACTTGGAAGCATGACCGTGCCCCTGCTGGGGTTGCGGACTGGCAGCTATT
GATGCTTTCGGGTGTGCTGGTGTGCTGTATATGTACCAAAAGCGCCTGAG
AGCGGCGGATGATGGCGCCGACTTCACTCAGCTCGTTCCCTCGATTCGGG
CAGCTCTTTGTGCGCTTCCGGGCTACTCCTGTCAGGAGCAATGAGAGCGG
CGCATGATGGCGCTAACTTAGGCTCGCTATCTCGATTGGCAGCTCTTTTG
TGTTTCCGGGCTACGTGCTCTTATCAGGAGCAATGTGTGCGGGGGTGACG
GCGCCAAGTTCAGCTCTCGCTGTCTCCCTCTCCCTCGCTTGCTTGTCGCT
CGTGTGCTTTGTGTGTTTGCACCCACCCCTGCATGGCCAGGCCGTGGTGG
TGATGCGGCTCCCCGATGGCACCTCGGCGACGCACACTTTCGGCGGCGTG
GCCACGCTCCGAGAGGTGGTATCGTGGCTGCAGTCCAACGAGCCAACTGC
CGGTGAGTTTTAGAAAGAGGGGGAGAGGGAGGGGCTGGGTGGCGGCAAGA
GACAACGAGAGAGGGGGAGAGGGAGAGGGAGAGAGGGGGGGGGGGGGGGG
GGGGGGGGGAGAGAGAGGAAGACAGATTCGGAAATATTCAGACAGAAAGC
AAGAAGGGGAAGAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGAGAGAG
GGAGAGAGAGGAAGACAGATTCAGACAGATTCAGACAGAATGCAAGAAGG
TGATAGAGAGGGAGGGCGAGGAAGAAAGGTGTGTGTGCGTGTGTGTGTGT
GCGTGTGAGAGAGAGAGAGAGAGGAAGGGAGATTAAGACAGAGGAGGACC
GAATGCAGGAAGGTGCTACAGAGGGAGGGCGAGGAAGAACAGGGGGGGAC
ATCTTAATCTTGCCTCACTGCCACAAACCACGAACCGCAGGGGAGTGTCA
GTGAGACAACTATTTGGTTAATGTATACAAATGTCAGCAGTCTACGTCCC
GTCTGTGAAGAAGCCGTTCCAGAGGGGCTGTTGCAGGCGTACTAACCCCC
CTGTTTCCCATCCCAGATATATTCGCACAAAATCAGTATACATCATTTAA
AACCAGTACAATAGTTCAATTAAACACCGTTACCTATTTAAGCTGTTTTG
CTTCCTCAGACGGGATTTTAGCCTTCGTCCGAAAGCACTAGAGCGCTGCT
AACTATTCAAGCTGCTTTGCTACAGACGGGATTTAGCTCATGTAGCAAGC
AGTGTTGCGAGTTTACTATGTACTATACAGATGCTTGGAAGCATACGCAG
TTACGGGGGCCTCTTGGAATACTCTCCCCCGTTCACATCAGAGGGAGGAT
GGCTCGCTTAAATAGCATATGACGTCGGTGGGAACAAAAACGGCCTGCGG
GCGCGCCATGCAAATAACGTAAATATGTATGTAAAAGGGTAGTCTACGCA
GGTTTTTGCTCAGCGAAACATATGGGATAAAGTATGGAATCGGGGAATGT
TTGGGGGGTCGGTGGTTGGGGTTAGGGTTAGGGTTACGGAACCCCTACTA
CTCTATTTCACATATAAACCAATATTCCCCGTTTTTTCTCGCGAAGGCAG
TCCATGTATAAAAATGGACTCCGCCTTCGCGAAGAAATCAAGTTTTGTTT
TCATATATGTGCAAAAGCTACCACCTAGATTTTTGGCCCGCTCTGTAGCC
ACACATCTCTACTACACAGCCTCAAAAGTCGAGTTTTGGATCACTTCCTG
CAAGCTGAGATACCGGCAGCTTTGTGCGTGGATATACTGAGGCCTTGTGC
CTTTGGCCGTGACAGAATGCGCCCCCTTGAAATCCTCCCGCATATGCGCC
CCCTTGAAATTTAGTTCCAGTAACACTGCATGTAAAAATGGACCCCGCCT
TCGCGAAGAAATCAAGTTTTTACCTTGGAAATAGATAGAGATGGCTCCCT
CCCCCCGTAGGTATAGCTGTACAAACCGTAACCCTAGCCTAACCTCACCC
AGAACCCCCGACCCCCTCTCCCGATTCCTATACCTATGACTTTTGCCTCC
ATGTGTCAGAGCTTGAGACAGAACCCTGCGAAGGCTTCTGGTAAAAAAAT
GGCGTGTGTGTGTGCGTGTGTGTTTGTGTGTGTTTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGGTTGTGTGCACAAAAGTAACGGCGATTC
CGTTTCTCGCTCGCTCGCTCGCTCCCTTCCTTCCTTCCTTGCCCTCCGGT
CGTGCCTGATCACGTCGTGGCATGCCCTTACCCTGTTGTCCGACCGCACA
CACACACAACACACACACACACACACGCACACACACACACACACACACAC
ACACACAACAGACACACACACACACTATACACACACGCACGCACACACAC
ACACTGAACACACGCACACGCACCCACACATTCACACACACTAAACACAC
ACACACACACACACGCACACGCACACACACACACGCACACACACGCACAC
ACGCACACGCACACGCACTCACACATTCACACCACGCGAACGAACGAACG
AACGAACGAACGATCGATCGATCGAACGGAACAAAACCTCTTGGCAGGTA
AATTGGAGGGCAAAGAGGTGGAGCTTCGCTGCCCCTTTCCGCCCCCCGGG
CTTGCCGTGACGGGGGGAGACCTGGACAGCAACACCGTGGAGGGGGTCGG
GCTCTGCCCGAGGGGTCGCCTGATGGTGCAGTTCAGGTAAGGCATGCGCG
GTGCAGCGTGGTGCGGCGCGGCGGGACAATCTGCCATTTGCCTTTTTTTT
GGTGAGTTTTATCGGGGGTGCACGGTCGGTACAACAGCACGGCACTAGAT
ATATCCACCAATCTACGAACAAGGAGACTTGCGGGCTGCATGCAATACCT
CACACCTATATATGTGTGCCCCTCGGTCCCACGTTTTTTTGGGCCTGGTC
CAGTTTGGTAGAACATATGTAAAGGGGATCCGTGTTGGGGGATGCCCGCA
TAACCGCGCCTCCTTAAGAATCTAGGCTGCCGTTCCCCCAAAACAAATAT
ATAGGAATTAGTATACGCCCCCCCCCCCCCCCCCCCCCCCCCCTTCCCCT
CCGAAACTCCATTTTTTGGGTTGGTTTGGGGGGGGTTATTTTGCCCCCCG
CCCCCTCTTTGGGGCAAAGNNNNNNNNNNGGGGGGTCCCCCCAAAACCGC
CCCCCCTTAAAAATTTTGGGTTCCCCTCCCCAAAAAAAAATTTTTGGGAT
TTGTTTTTCCCCCCCCCCCCCCCCCCCTCCTCCGATTCCGGTCTAAGTCA
GTTTGTTGGCGTAGTTGTGGAGTGGGATATTGCAGCCCGCAAGCCCTCTT
GCTGCGAAACTCGGGGGATTGCGTGTTTCATTTGGGTGGTGGTTGGGTGG
TGGTTGGGTGGTGGTTGGGTGGTGGTTGGGATAGATTTCTGGGCGGGAAA
CACGTGGACGAGGTCGGGGGGCCCTGCCCCAAACGGGTCGCCTGACGACG
GCGCAGATCAGGTACGAAAAGGCAGGCGGGGCGGGGCGGGGCGGGGGCAT
TTGTCACTTTGTTTCCATCAGGGAACTCTCTAGGTAGAGAGGGTTAGTTG
TCATGGGTCCGTCCGCCTTGACCTTTTATGCATGCGGATTTTTTTCATTT
TTTTATGCTTTTGTTTTTGTGAGCGCAAATGCACCTCAAAAACACCCCAA
TTATGCTCATTATGCTCCAAAAAACGGTGAATTATGCTGACAATTTGCTT
AAATTGGCAAATATGCTCAGTTATGCTCCTGAAAATCGAGCGTAACCTAT
GCGCAATTATGCGCGCGCATATTAGGTCAAAGCCTAGTCGTCTGTCGTCC
ATCGTCCGTCCCCCCCCGAACGCTGAATGAGCTGGACGGTCTCTGGTCTC
ACTGCCTCACGAGCCGAGACCTAGCTAGCTAGGTAGCTGCTGCCTGCCCG
GCCCCAGACCAGAACCCACGGTAGTGAGGCTGACCCATCACATCACCACA
CACTTAAACTCTTTTCCCTTTTTTTCTCTCTCTGTCTCTCTCTCTCTCTG
TGTCTCTCCCTCTCTCTCTCTCCCCCCCCCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCCCGCCACCCACCCCCCCACCCGAACCACCGCCCACCCCCA
CATTCTGCTTTTGCTCTGTGAACGTCGAAAAACAGCGGCGAGGCGGGCAT
CAAGCAGGGCGAGGGCGGGATGCCCTCGGCCAACAGCCGCCCCGGCGCCC
ACCGTACCCATTTTGGTGGCCTTGGCGGCGGCGGCGGTCGGGGGCCCCCG
TTCCATCTCGGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8200:3045..8409-

>mRNA_L-elsbetiae_contig8200.17205.1 ID=mRNA_L-elsbetiae_contig8200.17205.1|Name=mRNA_L-elsbetiae_contig8200.17205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig8200:3045..8409- (Laminarionema elsbetiae ELsaHSoW15)
AGTGGGGGCGGCGAGGCGGAGGCAAAGGAAAAGGAAAAGGAGGGACCGCC
GCCGTCGTCACCCCCGGCCGAGGCTGCCTCTCAGAGTGGGGGCGGCGAGG
CGGAGGCAAAGGAAAAGGAAAAGGAGGGACCGCCGCCGTCGTCACCCCCG
GCCGAGGCTGCCTCTCAGGCCGTGGTGGTGATGCGGCTCCCCGATGGCAC
CTCGGCGACGCACACTTTCGGCGGCGTGGCCACGCTCCGAGAGGTGGTAT
CGTGGCTGCAGTCCAACGAGCCAACTGCCGGCCGTGGTGGTGATGCGGCT
CCCCGATGGCACCTCGGCGACGCACACTTTCGGCGGCGTGGCCACGCTCC
GAGAGGTGGTATCGTGGCTGCAGTCCAACGAGCCAACTGCCGGTAAATTG
GAGGGCAAAGAGGTGGAGCTTCGCTGCCCCTTTCCGCCCCCCGGGCTTGC
CGTGACGGGGGGAGACCTGGACAGCAACACCGTGGAGGGGGTCGGGCTCT
GCCCGAGGGGTCGCCTGATGGTGCAGTTCAGGTAAATTGGAGGGCAAAGA
GGTGGAGCTTCGCTGCCCCTTTCCGCCCCCCGGGCTTGCCGTGACGGGGG
GAGACCTGGACAGCAACACCGTGGAGGGGGTCGGGCTCTGCCCGAGGGGT
CGCCTGATGGTGCAGTTCAGCGGCGAGGCGGGCATCAAGCAGGGCGAGGG
CGGGATGCCCTCGGCCAACAGCCGCCCCGGCGCCCACCGTACCCATTTTG
GTGGCCTTGGCGGCGGCGGCGGTCGGGGGCCCCCGTTCCATCTCGGCGGG
CGGCGAGGCGGGCATCAAGCAGGGCGAGGGCGGGATGCCCTCGGCCAACA
GCCGCCCCGGCGCCCACCGTACCCATTTTGGTGGCCTTGGCGGCGGCGGC
GGTCGGGGGCCCCCGTTCCATCTCGGCGGG
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