prot_L-elsbetiae_contig82.17194.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig82.17194.1
Unique Nameprot_L-elsbetiae_contig82.17194.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length307
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig82.17194.1 vs. uniprot
Match: D7FLE5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLE5_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 3.910e-74
Identity = 233/308 (75.65%), Postives = 249/308 (80.84%), Query Frame = 0 
Query:    1 MTGVDAAAWMESFKEYLEPVAKMTLDVKDKLEGYDYPPAIVDAYKSTATAIGAEDISPLYVGVGVGMVAASGVLLLACRSCQAAPKKK-GRGSKXXXXXXXXXANGSAHXXXXXXXXXXXXXXXXXVNGGSGTRGLPSMQQPKPSANGAKXXXXXXXXXXXXXXXXXXXXXXXVK-PVPEAPPVITEEPEAAVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDSDPWGAQHAGGEWLTGPVGSQEGEWETVSHKRSKPRKERTAVDEADAIPGGLGL 306
            M GVDAAAWMESFK+YLEPV K+ LDVKDKLEGYDYPPA+VDAYK+TATAIG EDISP+YVGVGV  VAASG LLLACRSCQAAPKKK GRGSKXXXXXXXXX      XXXXXXXXXXXXXXXXX           + ++PKP+A GA+                X       K PV EAPPVITEEPE    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AG++DPWGAQHAGGEW TGP+GSQEGEWETVSHKRSKPRKE+ AVD+A+AIPGGLGL
Sbjct:    1 MAGVDAAAWMESFKDYLEPVTKIALDVKDKLEGYDYPPAVVDAYKTTATAIGVEDISPVYVGVGV--VAASGFLLLACRSCQAAPKKKKGRGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARDLAGKKPKPAAGGAQAAAPKASKKAPTKAPQXQGKGKGKKKPVAEAPPVITEEPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AGEADPWGAQHAGGEWQTGPMGSQEGEWETVSHKRSKPRKEKAAVDDANAIPGGLGL 305
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig82.17194.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLE5_ECTSI3.910e-7475.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..58
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 79..306
NoneNo IPR availableTMHMMTMhelixcoord: 56..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig82contigL-elsbetiae_contig82:14372..17029 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig82.17194.1mRNA_L-elsbetiae_contig82.17194.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig82 14372..17029 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig82.17194.1 ID=prot_L-elsbetiae_contig82.17194.1|Name=mRNA_L-elsbetiae_contig82.17194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=307bp
MTGVDAAAWMESFKEYLEPVAKMTLDVKDKLEGYDYPPAIVDAYKSTATA
IGAEDISPLYVGVGVGMVAASGVLLLACRSCQAAPKKKGRGSKKSKAKAK
PAANGSAHKNGGSGKGGAAPAGVAAVNGGSGTRGLPSMQQPKPSANGAKA
AAPKPKKAPAKAPQPQGKGKGKVKPVPEAPPVITEEPEAAVKKVSKKKAA
KKAKAAAAAATAAPAAVAKKTSKKGSTTANGSGPGGVGSRQAQQNGGGGA
GDSDPWGAQHAGGEWLTGPVGSQEGEWETVSHKRSKPRKERTAVDEADAI
PGGLGL*
back to top