mRNA_L-elsbetiae_contig82.17194.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig82.17194.1
Unique NamemRNA_L-elsbetiae_contig82.17194.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig82.17194.1 vs. uniprot
Match: D7FLE5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLE5_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 3.910e-74
Identity = 233/308 (75.65%), Postives = 249/308 (80.84%), Query Frame = 1 
Query:    1 MTGVDAAAWMESFKEYLEPVAKMTLDVKDKLEGYDYPPAIVDAYKSTATAIGAEDISPLYVGVGVGMVAASGVLLLACRSCQAAPKKK-GRGSKXXXXXXXXXANGSAHXXXXXXXXXXXXXXXXXVNGGSGTRGLPSMQQPKPSANGAKXXXXXXXXXXXXXXXXXXXXXXXVK-PVPEAPPVITEEPEAAVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDSDPWGAQHAGGEWLTGPVGSQEGEWETVSHKRSKPRKERTAVDEADAIPGGLGL 918
            M GVDAAAWMESFK+YLEPV K+ LDVKDKLEGYDYPPA+VDAYK+TATAIG EDISP+YVGVGV  VAASG LLLACRSCQAAPKKK GRGSKXXXXXXXXX      XXXXXXXXXXXXXXXXX           + ++PKP+A GA+                X       K PV EAPPVITEEPE    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AG++DPWGAQHAGGEW TGP+GSQEGEWETVSHKRSKPRKE+ AVD+A+AIPGGLGL
Sbjct:    1 MAGVDAAAWMESFKDYLEPVTKIALDVKDKLEGYDYPPAVVDAYKTTATAIGVEDISPVYVGVGV--VAASGFLLLACRSCQAAPKKKKGRGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARDLAGKKPKPAAGGAQAAAPKASKKAPTKAPQXQGKGKGKKKPVAEAPPVITEEPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AGEADPWGAQHAGGEWQTGPMGSQEGEWETVSHKRSKPRKEKAAVDDANAIPGGLGL 305
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig82.17194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLE5_ECTSI3.910e-7475.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig82contigL-elsbetiae_contig82:14372..17029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_007850.1
Exons3
Model size921
Cds size921
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig82.17194.1prot_L-elsbetiae_contig82.17194.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig82 14372..17029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816903.4440694-CDS-L-elsbetiae_contig82:14371..144611622816903.4440694-CDS-L-elsbetiae_contig82:14371..14461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig82 14372..14461 +
1691683900.24259-CDS-L-elsbetiae_contig82:14371..144611691683900.24259-CDS-L-elsbetiae_contig82:14371..14461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig82 14372..14461 +
1622816903.4565885-CDS-L-elsbetiae_contig82:15514..159761622816903.4565885-CDS-L-elsbetiae_contig82:15514..15976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig82 15515..15976 +
1691683900.254563-CDS-L-elsbetiae_contig82:15514..159761691683900.254563-CDS-L-elsbetiae_contig82:15514..15976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig82 15515..15976 +
1622816903.4699721-CDS-L-elsbetiae_contig82:16660..170291622816903.4699721-CDS-L-elsbetiae_contig82:16660..17029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig82 16661..17029 +
1691683900.2708228-CDS-L-elsbetiae_contig82:16660..170291691683900.2708228-CDS-L-elsbetiae_contig82:16660..17029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig82 16661..17029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig82.17194.1

>prot_L-elsbetiae_contig82.17194.1 ID=prot_L-elsbetiae_contig82.17194.1|Name=mRNA_L-elsbetiae_contig82.17194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=307bp
MTGVDAAAWMESFKEYLEPVAKMTLDVKDKLEGYDYPPAIVDAYKSTATA
IGAEDISPLYVGVGVGMVAASGVLLLACRSCQAAPKKKGRGSKKSKAKAK
PAANGSAHKNGGSGKGGAAPAGVAAVNGGSGTRGLPSMQQPKPSANGAKA
AAPKPKKAPAKAPQPQGKGKGKVKPVPEAPPVITEEPEAAVKKVSKKKAA
KKAKAAAAAATAAPAAVAKKTSKKGSTTANGSGPGGVGSRQAQQNGGGGA
GDSDPWGAQHAGGEWLTGPVGSQEGEWETVSHKRSKPRKERTAVDEADAI
PGGLGL*
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mRNA from alignment at L-elsbetiae_contig82:14372..17029+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig82.17194.1 ID=mRNA_L-elsbetiae_contig82.17194.1|Name=mRNA_L-elsbetiae_contig82.17194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2658bp|location=Sequence derived from alignment at L-elsbetiae_contig82:14372..17029+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGGCGTAGACGCTGCCGCGTGGATGGAAAGCTTCAAGGAGTATCT
GGAGCCGGTGGCAAAGATGACTCTGGATGTCAAGGACAAGGTGGGCGAGA
AATAGAACAGCATTTTCGCTTGTGCACTCATTTGGCCGGTATTGCGGACC
TGATGCTTTTACCCCGAGCGTGAGGAGTTGTTCTTGGCCTTTTTTCACAA
AAGCGGCGCAGGAATCGAGCGGTCAAGGAGGTGCACGCACCCACACACCC
ACACGATTGCTCCCAGAGAATTCTCTCTTGTTCTCTGGGTTTAGGAATGA
AGAATCAGACGCTTTTCTATGCAAAGAAACTTGACAGAGTAGAGGGCGGG
TGAGCGACTGCTGTGGGTGTATCATCGAATGTGGTGCATGTGTGGGGAAA
ATGTATATTTGTGTGTGTGTTGTGGATCTCTCTGTCAGAAACCTGTCCAT
CGGGTTGCCGTCCGCCTCTCTAGTCTCCCTCTTTTTGAGCGCAGCGTGTC
CATGCATGCTGCGCCATGTGTTTGCTCGTGGTTGATTCTAAGCTAGACGT
CAACTGAATCCGCTGCGTCCTGCTAAATCGTCATCCAGCGCACTGCTTGC
CCTGCTGAACAACACGGCGTTACACTATCTAGATACGAAGTAATTTTTTT
TTATGTACAAGTGTGTGAATGCCCCGTCTATCGCCGCCCACCCTGCGGTA
TTAGCGTCGAACATCCGTTGTACGTTTGTCTTTTGCCCACTCTTCTTTCT
GCATTCTCCATCGGAGAGAAGTGCGCAGCACGATTCGATTTTTGTTGAGA
TTGCGAATTCAATCTAGCCTTTCCGCAAAGCCTGCGGCCTCTGGGCAAAC
CGCGTGCCGTGTGTTTGTCTCAAGAAGATGCACACCCTCTTCATCCGCAG
AAACGAATTAGTGTGAAGTCAGCTGCTTTACCGGCCAGTTCGCAACTGCA
TTGTTCGTGTAATACTTTCATTGCATGCCAGGTTGCGAAAACGAAGGAAA
TGAAGGCACAGGGCTTTTTCGAAGTTCGAACACGACACCTTCATGACGCG
CACTGCTTTATCACATCACTGTCTACATTCCCCAAGGACTAATACCGGCC
TACGCCTAACTTACGCCCTTTTAATGCAACTATCTACCTGCAGCTGGAAG
GCTACGATTACCCGCCAGCGATCGTTGACGCATACAAGAGCACCGCGACC
GCGATCGGGGCTGAGGATATCAGCCCCCTCTACGTGGGCGTCGGCGTCGG
CATGGTGGCCGCGTCCGGCGTCCTCCTCTTGGCCTGCCGTAGCTGCCAGG
CCGCCCCAAAAAAGAAGGGGCGTGGATCGAAAAAGTCGAAGGCGAAAGCC
AAGCCAGCTGCGAACGGAAGCGCGCATAAGAACGGCGGGAGTGGAAAGGG
TGGGGCGGCGCCTGCGGGCGTGGCTGCAGTCAACGGCGGATCGGGGACCC
GCGGACTTCCCAGCATGCAGCAGCCGAAGCCTTCAGCGAACGGCGCTAAG
GCTGCTGCTCCTAAGCCCAAAAAGGCGCCGGCAAAGGCGCCCCAACCCCA
AGGGAAGGGAAAGGGTAAGGTGAAGCCCGTACCAGAAGCTCCTCCGGTGA
TCACGGTGAGTATGACGGATGCAGTTTTTTTTTTGGGGGGGGAACTGGTA
TATATCGTCCACCAGGCTTTTGGATAAACTGCTGGGATTTAACTTTGGTA
GGTTTGCACGGAGCAGGGACATCTAATGCTGTGCAGAACACGTGTTAACA
CGATATGTTTCTCGCTGGCTCCACATACTCTCTTCGTCGGGCGATGAGAG
TCTGTTTGGCGTCGTTGTGTGTTTTGGGAATTGGCGGTTGTCCAATAGGT
TTTATATTTCCCCGCACCTGTAGCGCGTCCATCGCCTTCAATCAATTTAT
TGTCTGTCATGTAAGTTCGGAAGGATGCATGCACCAAATACCCCCCCCCC
CCAAAAAAAAAGCAAACTACCCCGCTTTCCTTTTTCGCTGGAATGTGAAA
TGTTGTCACCACGTGTTGACTTCGTGTGCAAGTTTTAGTTTTGGCACAAT
ATGACCTCACCAATGTATGTTTTGGAGCCAATCACGTCTCTGATCCTTTT
CTCTCTTGTAAACGAGGACCCTGATACTACTGTAACGATCTGTTGCTCGA
GCATTGAAACGACGCCCCAAGTTGCCTCCCTCTTGCCCGGCCCTCTTGAA
TGCGGTGGCGATTACCGAACTAGTTACATATGTATGCTCAACTCACATTG
TTCTGTCCCGCTGTTGTTTTCCCGATGGATCGCCTGCAGGAGGAGCCGGA
AGCGGCTGTGAAAAAAGTCAGCAAAAAGAAGGCCGCGAAGAAGGCTAAGG
CCGCCGCCGCCGCCGCCACGGCAGCTCCAGCAGCCGTCGCTAAAAAGACG
TCGAAAAAGGGTTCGACGACAGCGAACGGTTCCGGGCCTGGTGGGGTAGG
GTCCCGGCAGGCACAGCAAAACGGGGGGGGAGGTGCTGGAGACTCCGACC
CCTGGGGAGCGCAGCACGCGGGAGGCGAGTGGCTGACGGGCCCCGTGGGC
TCGCAGGAGGGGGAGTGGGAAACGGTTTCCCACAAGAGGTCTAAGCCTCG
GAAGGAAAGAACGGCGGTGGACGAAGCGGATGCCATTCCCGGAGGGCTTG
GGCTCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig82:14372..17029+

>mRNA_L-elsbetiae_contig82.17194.1 ID=mRNA_L-elsbetiae_contig82.17194.1|Name=mRNA_L-elsbetiae_contig82.17194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1842bp|location=Sequence derived from alignment at L-elsbetiae_contig82:14372..17029+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGGCGTAGACGCTGCCGCGTGGATGGAAAGCTTCAAGGAGTATCT
GGAGCCGGTGGCAAAGATGACTCTGGATGTCAAGGACAAGATGACCGGCG
TAGACGCTGCCGCGTGGATGGAAAGCTTCAAGGAGTATCTGGAGCCGGTG
GCAAAGATGACTCTGGATGTCAAGGACAAGCTGGAAGGCTACGATTACCC
GCCAGCGATCGTTGACGCATACAAGAGCACCGCGACCGCGATCGGGGCTG
AGGATATCAGCCCCCTCTACGTGGGCGTCGGCGTCGGCATGGTGGCCGCG
TCCGGCGTCCTCCTCTTGGCCTGCCGTAGCTGCCAGGCCGCCCCAAAAAA
GAAGGGGCGTGGATCGAAAAAGTCGAAGGCGAAAGCCAAGCCAGCTGCGA
ACGGAAGCGCGCATAAGAACGGCGGGAGTGGAAAGGGTGGGGCGGCGCCT
GCGGGCGTGGCTGCAGTCAACGGCGGATCGGGGACCCGCGGACTTCCCAG
CATGCAGCAGCCGAAGCCTTCAGCGAACGGCGCTAAGGCTGCTGCTCCTA
AGCCCAAAAAGGCGCCGGCAAAGGCGCCCCAACCCCAAGGGAAGGGAAAG
GGTAAGGTGAAGCCCGTACCAGAAGCTCCTCCGGTGATCACGCTGGAAGG
CTACGATTACCCGCCAGCGATCGTTGACGCATACAAGAGCACCGCGACCG
CGATCGGGGCTGAGGATATCAGCCCCCTCTACGTGGGCGTCGGCGTCGGC
ATGGTGGCCGCGTCCGGCGTCCTCCTCTTGGCCTGCCGTAGCTGCCAGGC
CGCCCCAAAAAAGAAGGGGCGTGGATCGAAAAAGTCGAAGGCGAAAGCCA
AGCCAGCTGCGAACGGAAGCGCGCATAAGAACGGCGGGAGTGGAAAGGGT
GGGGCGGCGCCTGCGGGCGTGGCTGCAGTCAACGGCGGATCGGGGACCCG
CGGACTTCCCAGCATGCAGCAGCCGAAGCCTTCAGCGAACGGCGCTAAGG
CTGCTGCTCCTAAGCCCAAAAAGGCGCCGGCAAAGGCGCCCCAACCCCAA
GGGAAGGGAAAGGGTAAGGTGAAGCCCGTACCAGAAGCTCCTCCGGTGAT
CACGGAGGAGCCGGAAGCGGCTGTGAAAAAAGTCAGCAAAAAGAAGGCCG
CGAAGAAGGCTAAGGCCGCCGCCGCCGCCGCCACGGCAGCTCCAGCAGCC
GTCGCTAAAAAGACGTCGAAAAAGGGTTCGACGACAGCGAACGGTTCCGG
GCCTGGTGGGGTAGGGTCCCGGCAGGCACAGCAAAACGGGGGGGGAGGTG
CTGGAGACTCCGACCCCTGGGGAGCGCAGCACGCGGGAGGCGAGTGGCTG
ACGGGCCCCGTGGGCTCGCAGGAGGGGGAGTGGGAAACGGTTTCCCACAA
GAGGTCTAAGCCTCGGAAGGAAAGAACGGCGGTGGACGAAGCGGATGCCA
TTCCCGGAGGGCTTGGGCTCTAAGAGGAGCCGGAAGCGGCTGTGAAAAAA
GTCAGCAAAAAGAAGGCCGCGAAGAAGGCTAAGGCCGCCGCCGCCGCCGC
CACGGCAGCTCCAGCAGCCGTCGCTAAAAAGACGTCGAAAAAGGGTTCGA
CGACAGCGAACGGTTCCGGGCCTGGTGGGGTAGGGTCCCGGCAGGCACAG
CAAAACGGGGGGGGAGGTGCTGGAGACTCCGACCCCTGGGGAGCGCAGCA
CGCGGGAGGCGAGTGGCTGACGGGCCCCGTGGGCTCGCAGGAGGGGGAGT
GGGAAACGGTTTCCCACAAGAGGTCTAAGCCTCGGAAGGAAAGAACGGCG
GTGGACGAAGCGGATGCCATTCCCGGAGGGCTTGGGCTCTAA
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