prot_L-elsbetiae_contig8116.17108.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8116.17108.1
Unique Nameprot_L-elsbetiae_contig8116.17108.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length94
Homology
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A6H5L0M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M8_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.380e-49
Identity = 83/92 (90.22%), Postives = 85/92 (92.39%), Query Frame = 0
Query:    1 MAMRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 92
            MAMRGVGK TR+TYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTP+AEPGAAGP      SSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN
Sbjct:    1 MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 92          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A7S0XAM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XAM5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.230e-20
Identity = 52/92 (56.52%), Postives = 60/92 (65.22%), Query Frame = 0
Query:    3 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSE 94
            M GVG ++ +T++  APS YVAG+GRGAVGFTTRSDIGPAR        A               P+FG APVGYVAGRGRGMG+LAKS  E
Sbjct:    1 MSGVGPKSVSTFSTTAPSYYVAGIGRGAVGFTTRSDIGPARPAFDPTNPAASTGLLPTVVNPFVTPNFGQAPVGYVAGRGRGMGELAKSQGE 92          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A6H5KUU3_9PHAE (PRP1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU3_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 8.230e-20
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 0
Query:   17 GAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPV 75
            GAPSN+VAGLGRGAVGFT RSDIGPART IAE GA GP      S G +KDPDFGP PV
Sbjct:   16 GAPSNHVAGLGRGAVGFTNRSDIGPARTTIAELGATGPRGATGASCGVSKDPDFGPVPV 74          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A7S3MCI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.750e-18
Identity = 51/90 (56.67%), Postives = 57/90 (63.33%), Query Frame = 0
Query:    6 VGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPD-FGPAPVGYVAGRGRGMGDLAKSNSE 94
            VG ++  TY    PSNYVAG+GRGA+GFTTRSDIGPAR          P      +      PD FGPAPVGYVAGRGRGMGDLA+   E
Sbjct:    1 VGPRSANTYTVAPPSNYVAGVGRGAMGFTTRSDIGPAR----------PAPPMGGAXXXXXXPDPFGPAPVGYVAGRGRGMGDLARGQDE 80          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 7.370e-17
Identity = 48/92 (52.17%), Postives = 55/92 (59.78%), Query Frame = 0
Query:    3 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSE 94
            M G G Q   TY+ GAP  Y AG GRGA+GFTTRSDIGPAR+ + E                    +FG  P GYVAGRGRGMGDLA+S +E
Sbjct:    1 MSGRGVQRLKTYDKGAPQGYQAGFGRGAIGFTTRSDIGPARSSVPEV-------------------NFGQPPPGYVAGRGRGMGDLARSQAE 73          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A7S4D952_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D952_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 8.810e-16
Identity = 51/89 (57.30%), Postives = 55/89 (61.80%), Query Frame = 0
Query:    5 GVGKQTRATY-NAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDP--DFGPAPVGYVAGRGRGMGDLAK 90
            GVG +T  T+ N   PSNYVAGLGRGAVGFTTRSDIGPART   + GAA            A+ P  DFG A  GYVAG GRG   L K
Sbjct:    3 GVGARTANTFGNVAVPSNYVAGLGRGAVGFTTRSDIGPARTAAPQSGAA-----------PAQPPVADFGAAXXGYVAGAGRGASILGK 80          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.780e-13
Identity = 45/82 (54.88%), Postives = 53/82 (64.63%), Query Frame = 0
Query:    3 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRG 84
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR+P+   G A        +   A  P   PAP    AGRGRG
Sbjct:    1 MSGLGQRLRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAADGGALRAAPTTAGPPGP-PAPFLPGAGRGRG 81          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD)

HSP 1 Score: 72.8 bits (177), Expect = 6.170e-13
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 0
Query:    3 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRGM 85
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+A  G+  P        GA   P     P    AGRGRG+
Sbjct:    1 MSGLGQRQRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGAPV------GGA---PGXXAPPYLPGAGRGRGV 74          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: A0A2P4Y3Q2_9STRA (Pre-mRNA-processing factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3Q2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.240e-12
Identity = 44/95 (46.32%), Postives = 53/95 (55.79%), Query Frame = 0
Query:    3 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPXXXXXXSSGAAKDPDFGPAPVGYVAGRGRG---MGDLAKSNSE 94
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G            G   +    P P    AGRG G   MG   +   E
Sbjct:    1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDGTQDAPFLPPAGRGRGVEIPGRPGPS---AGRGSGTAGMGGFGREKDE 92          
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Match: H3GKT1_PHYRM (PRP1_N domain-containing protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3GKT1_PHYRM)

HSP 1 Score: 68.9 bits (167), Expect = 1.390e-11
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0
Query:    3 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPG 50
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G
Sbjct:    1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDG 48          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8116.17108.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0M8_9PHAE1.380e-4990.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0XAM5_9STRA5.230e-2056.52Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A6H5KUU3_9PHAE8.230e-2074.58PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3MCI9_9STRA1.750e-1856.67Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9D6Q2_9STRA7.370e-1752.17Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4D952_HETAK8.810e-1657.30Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5D6YDN0_9STRA1.780e-1354.88Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WCC0_GLOUD6.170e-1354.22PRP1_N domain-containing protein n=1 Tax=Globispor... [more]
A0A2P4Y3Q2_9STRA3.240e-1246.32Pre-mRNA-processing factor (Fragment) n=1 Tax=Phyt... [more]
H3GKT1_PHYRM1.390e-1168.75PRP1_N domain-containing protein n=24 Tax=Peronosp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010491PRP1 splicing factor, N-terminalPFAMPF06424PRP1_Ncoord: 18..49
e-value: 3.3E-12
score: 47.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8116contigL-elsbetiae_contig8116:3871..4912 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8116.17108.1mRNA_L-elsbetiae_contig8116.17108.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8116 3858..4912 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8116.17108.1 ID=prot_L-elsbetiae_contig8116.17108.1|Name=mRNA_L-elsbetiae_contig8116.17108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MAMRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPG
AAGPPGAAGPSSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010491PRP1_N